HOTAIR Induces the Downregulation of miR-200 Family Members in Gastric Cancer Cell Lines

Background:Gastric cancer is the fourth most common human malignancy and the second reason for cancer morbidity worldwide. LncRNA HOTAIR has recently emerged as a promoter of metastasis in various cancer types, including GC, through the EMT process. However, the exact mechanism of HOTAIR in promoting EMT is unknown. Aberrant expression of the miR-200 family has been linked to the occurrence and development of various types of malignant tumors. This study investigates the correlation between the HOTAIR and miR-200 family gene expression patterns in GC cell lines. We investigated the miR-200 and HOTAIR due to their common molecular features in the EMT process. Methods:AGS and MKN45 cell lines were transfected with si-HOTAIR, along with a negative control. The effect of HOTAIR knockdown was also analyzed on cell viability and also on the expression of miR-200 family members, including miR-200a, -200b, and -200c, in cell lines using qRT-PCR. Statistical analysis was performed to find the potential correlation between the expression level of HOTAIR and miRs. Results:Our results showed significant increased miR-200 family expression level in transfected AGS and MKN45 GC cells (fold changes > 2; p < 0.001). Moreover, a negative correlation was observed between HOTAIR and miR-200 expression levels in GC cell lines (p < 0.05). Conclusion:Our findings showed a significant association between miR-200 family and HOTAIR expression levels in GC cell lines. Taken together, the HOTAIR-miR-200 axis seems to play a vital role in human GC, suggesting a potential therapeutic target in future GC treatment. Key Words: Gene expression, Long noncoding RNA, HOTAIR, MicroRNAs     

RELATIVE EFFICIENCY OF DIAMMONIUM PHOSPHATE AND MUSSOORIE ROCK PHOSPHATE PLUS PHOSPHATE SOLUBILIZING BACTERIA ON PRODUCTIVITY AND PHOSPHORUS BALANCE IN RICE-POTATO-MUNGBEAN CROPPING SYSTEM

Field experiments were conducted at the Indian Agricultural Research Institute, New Delhi, India for three years from 2001–2002 to 2003–2004 to study the relative efficiency of diammonium phosphate (DAP) and mussoorie rock phosphate (MRP) in a rice-potato-mungbean cropping system. Phosphorus application significantly increased productivity, protein yield and energy output of rice-potato-mungbean cropping system and resulted in an increase in 0.5 M sodium bicarbonate (NaHCO₃) extractable phosphorus (P) content in soil. The MRP at 35 kg P ha^?1 was at par with 17.5 kg P ha^?1 as DAP in terms of productivity, protein yield, and energy output but significantly superior in terms of PSB population in soil. Phosphorus balance (application – crop removal) was generally more positive for MRP than DAP and the highest with an application of 52.5 kg P ha^?1 as MRP. Present study indicates that P requirement of a rice-potato-mungbean cropping system can be met with 76–79% higher dose of MRP as compared to DAP.     

Callus induction and embryogenesis of alfalfa (<Emphasis Type="Italic">Medicago sativa</Emphasis> L.) using hypocotyl thin cell layer culture

This research is performed for evaluating the morphogenesis responses of thin cell layers (TCL) of alfalfa (Medicago sativa cv. Karysary) hypocotyls. TCLs (0.1–0.5 mm) were obtained from sterile hypocotyls that were cultured to SH medium containing various combinations of 2,4-D and kin (0, 0.5, 1, 1.5 and 2 mg/l). Unexpectedly, the percentage of callus induction (PCI) and Callus diameter (CD) were not affected by different concentrations of 2,4-D and kin. PCI was 100% without any correlation to hormonal combinations. Significantly the difference between concentrations of 2,4-D and kin for percentage of somatic embryogenesis (PSE) was observed (p < 0.01) so that, the maximum PSE occurred with 1.5 mg/l 2,4-D and without kin. The 2,4-D and kin interaction was not significant for PSE showing that each of these hormones affected by PSE independently. The number of embryoids (NE) was significantly different on the various concentrations of 2,4-D (p < 0.05) and maximum NEs were observed on 1.5 mg/l 2,4-D and without kin.     

Manufacturing polymethyl methacrylate nanofibers as a support for enzyme immobilization

Nanofibers have a great potential for enzyme immobilization application due to their large surface area to volume ratio besides their porous structure. In this work, we produce polymethyl methacrylate (PMMA) nanofibers via electrospinning method in dimethylformamide (DMF) as solvent. Thereafter, we employ a chemical method on final PMMA nanofiberous web to covalently immobilize acetylcholinesterase (AChE) enzyme on membrane surface. Morphology and tensile properties of nanofibers are studied as first steps of characterization to make sure of obtaining a properly stable membrane for enzyme carrying application. Thereafter, the stability and activity of immobilized enzymes as two main characteristic parameters are tested and reported for different applications such as biosensor manufacturing.     

Site selection for Haloxylon ammodendron plantation based on soil factors

The success of plantation, establishment, and growth of trees and shrubs is an important concern in afforestation efforts. There have been extensive efforts to use Haloxylon ammodendron in many desert areas throughout the world in desert combating projects, but these efforts have not always been successful, despite high costs. In this study, we propose a new application of fuzzy decision-making method for selecting suitable sites for the growth of this species. We determine, based on available autecological studies, the most effective factors in desert habitats, and a fuzzy membership function is designed for each of the factors. A suitability index is constructed by unifying the fuzzified factors. This model is then applied to an actual plantation area to evaluate the suitability of different parts of this trial area. Finally, the predicted results are compared to the actual rate of success, based on the canopy cover percentage. The coefficient of determination for the observed canopy cover percentage plotted against the predicted suitability values is higher than 98%, which demonstrates that the presented fuzzy decision-making approach is potentially a powerful tool in site selection for this and, probably, other species.     

Spatial analysis of soil surface hydraulic properties: Is infiltration method dependent?

The management of irrigated agricultural fields requires reliable information about soil hydraulic properties and their spatio-temporal variability. The spatial variability of saturated hydraulic conductivity, K_s and the alpha-parameter α_vG-2007 of the van Genuchten equation was reviewed on an agricultural loamy soil after a 17-year period of repeated conventional agricultural practices for tillage and planting. The Beerkan infiltration method and its algorithm BEST were used to characterize the soil through the van Genuchten and Brooks and Corey equations. Forty field measurements were made at each node of a 6 m × 7.5 m grid. The soil hydraulic properties and their spatial structure were compared to those recorded in 1990 on the same field soil, through the exponential form of the soil hydraulic conductivity given by the Gardner equation, using the Guelph Pressure Infiltrometer technique. No significant differences in the results obtained in 1990 and 2007 were observed for either particle-size distribution or dry bulk density. The mean value of α_vG-2007 was found to be identical to that of α_G-1990, while that of K_s-2007 was significantly smaller than that of K_s-1990. In contrast to the Gardner equation, the van Genuchten/Brooks and Corey expression was found to be more representative of a well-graded particle-size distribution of a loamy soil. The geostatistical analysis showed the two parameters, K_s and α_vG-2007, were autocorrelated up to about 30 and 21 m, respectively, as well as spatially positively correlated within a range of 30 m. Despite the difference in the mean values of K_s between the two studies, the spatial structures were similar to those found in the 1990 experiment except for the covariance sign. The similarity in autocorrelation ranges indicate that the spatial analysis of soil hydraulic properties is independent of the infiltration methods (i.e., measurement of an infiltration flux) used in the two studies, while the difference in the covariance sign may be linked to the use of two different techniques of soil hydraulic parameterization. The covariance values found in the 2007 campaign indicates a positive relationship between the two parameters, K_s and α_vG-2007. The spatial correlations of soil hydraulic parameters appear to be temporally stabilized, at least within the agro-pedo-climatic context of the study. This may be attributed to the soil textural properties which remain constant in time and to the structural properties which are constantly renewed by the cyclic agricultural practices. However, further experiments are needed to strengthen this result.