Relationships of dead wood patterns with biophysical characteristics and ownership according to scale in Coastal Oregon,USA

Dead wood patterns and dynamics vary with biophysical factors, disturbance history, ownership, and management practices; the relative importance of these factors is poorly understood, especially at landscape to regional scales. This study examined current dead wood amounts in the Coastal Province of Oregon, USA, at multiple spatial scales. Objectives were to: (1) describe current regional amounts of several characteristics of dead wood; (2) compare dead wood amounts across ownerships; (3) determine the relative importance, according to spatial scale, of biophysical and ownership characteristics, to regional dead wood abundance. Dead wood plot data were evaluated with respect to explanatory variables at four spatial scales of resolution: plots, subwatersheds, watersheds and subbasins. The relationships of dead wood characteristics with biophysical attributes and ownership were diverse and scale-specific. Region-wide dead wood abundance and types varied among ownerships, with public lands typically having higher amounts of dead wood and more large dead wood than private lands. Regression analysis of total dead wood volume indicated that ownership was important at the subbasin scale. Growing season moisture stress was important at plot, subwatershed, and watershed scales. Topography was important at the two coarser scales. Multivariate analysis of dead wood gradients showed that ownership was important at all scales, topography at the subbasin scale, historical vegetation at watershed and subbasin scales, and current vegetation at plot and subwatershed scales. Management for dead wood and related biodiversity at watershed to landscape scales should consider the distinct dynamics of snags and logs, the importance of historical effects, and the relevance of ownership patterns.     

Effects of landscape urbanization on magpie occupancy dynamics in France

Responses of species to landscape modifications are generally documented through their distribution at a given time along an intensity gradient of land transformation. By focusing on patterns, we are limited to infer ecological processes occurring within a system and its response to environmental disturbances which can further change over time. Using diachronic datasets at the scale of France, we analyzed the spatial responses of the black-billed magpie, which has recently colonized cities, to landscape urbanization. This study applied recently developed statistical approaches incorporating detection uncertainty of the magpie, based on the capture-recapture statistical framework. We tested whether, and how, extinction and colonization mechanisms influenced variations of magpie occupancy from 2001 to 2005. In addition, we assessed the importance of the recent urbanization of the French countryside in determining population dynamics. Overall, our analysis proved that the proportion of urban areas and recent urbanization in France led to an increase in the probability of magpie occupancy. Unexpectedly, the species is concomitantly disappearing from the countryside, leading to a rapid change in the distribution of the species. This study stressed the importance of incorporating detection uncertainty in inference process about spatial dynamics. Overall, we show how useful it is to account for the dynamic evolution of the landscape in ecological studies.     

Modeling tsunami damage in Aceh: a reply

In reply to the critique of Baird and Kerr, we emphasize that our model is a generalized vulnerability model, built from easily acquired data from anywhere in the world, to identify areas with probable susceptibility to large tsunamis—and discuss their other criticisms in detail. We also show that a rejection of the role of trees in helping protect vulnerable areas is not justified in light of existing evidence.     

The importance of landscape context for songbirds on migration: body mass gain is related to habitat cover

Landscape context influences many aspects of songbird ecology during the breeding season. The importance of landscape context at stopover sites for migrating songbirds, however, has received less attention. In particular, landscape context may affect the availability and quality of food for refueling during stopovers, which is critical for successful migration. We evaluated the influence of woody habitat cover in the surroundings of stopover sites at several spatial extents on the hourly changes of body mass in two species of European-African forest-dwelling songbird migrants (Willow Warbler, Phylloscopus trochilus, and the Eurasian Redstart, Phoenicurus phoenicurus). Data were sampled by standardized methods from a network of ringing stations throughout Europe during the falls of 1994–1996. In both species, hourly body mass gain calculated for first captures increased with woody habitat cover. We found a similar logarithmic relationship for both species, although for Willow Warblers mass gain was more strongly related to the habitat cover within 5 km, in contrast to 3 km for Redstarts. For Willow Warblers, where sufficient data are available for each year, the relationship is consistent over the years. The shape of the relationship suggests existence of a threshold of landscape suitability for refueling at stopover sites: in sites with less than 10% of woody habitat cover, birds tend to lose body mass or to gain mass at a lower rate. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Influence of habitat amount,arrangement, and use on population trend estimates of male Kirtland’s warblers

Kirtland’s warblers (Dendroica kirtlandii) persist in a naturally patchy environment of young, regenerating jack pine forests (i.e., 5–23 years old) created after wildfires and human logging activities. We examined how changing landscape structure from 26 years of forest management and wildfire disturbances influenced population size and spatial dispersion of male Kirtland’s warblers within their restricted breeding range in northern Lower Michigan, USA. The male Kirtland’s warbler population was six times larger in 2004 (1,322) compared to 1979 (205); the change was nonlinear with 1987 and 1994 identified as significant points of change. In 1987, the population trend began increasing after a slowly declining trend prior to 1987, and the rate of increase appeared to slow after 1994. Total amount of suitable habitat and the relative area of wildfire-regenerated habitat were the most important factors explaining population trend. Suitable habitat increased 149% primarily due to increasing plantations from forest management. The relative amount and location of wildfire-regenerated habitat modified the distribution of males among various habitat types, and the spatial variation in their abundance across the primary breeding range. These findings indicate that the Kirtland’s warbler male population shifted its use of habitat types temporally and spatially as the population increased and as the relative availability of habitats changed through time. We demonstrate that researchers and managers need to consider not only habitat quality, but the temporal and the spatial context of habitat availability and population levels when making habitat restoration decisions.     

Protocol: A high-throughput DNA extraction system suitable for conifers

Background  

High throughput DNA isolation from plants is a major bottleneck for most studies requiring large sample sizes. A variety of protocols have been developed for DNA isolation from plants. However, many species, including conifers, have high contents of secondary metabolites that interfere with the extraction process or the subsequent analysis steps. Here, we describe a procedure for high-throughput DNA isolation from conifers.     

Development and evaluation of a high-throughput,low-cost genotyping platform based on oligonucleotide microarrays in rice

Background  

We report the development of a microarray platform for rapid and cost-effective genetic mapping, and its evaluation using rice as a model. In contrast to methods employing whole-genome tiling microarrays for genotyping, our method is based on low-cost spotted microarray production, focusing only on known polymorphic features.     

Influence of landscape structure,topography, and forest type on spatial variation in historical fire regimes,Central Oregon,USA

Context

In the interior Northwest, debate over restoring mixed-conifer forests after a century of fire exclusion is hampered by poor understanding of the pattern and causes of spatial variation in historical fire regimes.

Objectives

To identify the roles of topography, landscape structure, and forest type in driving spatial variation in historical fire regimes in mixed-conifer forests of central Oregon.

Methods

We used tree rings to reconstruct multicentury fire and forest histories at 105 plots over 10,393 ha. We classified fire regimes into four types and assessed whether they varied with topography, the location of fuel-limited pumice basins that inhibit fire spread, and an updated classification of forest type.

Results

We identified four fire-regime types and six forest types. Although surface fires were frequent and often extensive, severe fires were rare in all four types. Fire regimes varied with some aspects of topography (elevation), but not others (slope or aspect) and with the distribution of pumice basins. Fire regimes did not strictly co-vary with mixed-conifer forest types.

Conclusions

Our work reveals the persistent influence of landscape structure on spatial variation in historical fire regimes and can help inform discussions about appropriate restoration of fire-excluded forests in the interior Northwest. Where the goal is to restore historical fire regimes at landscape scales, managers may want to consider the influence of topoedaphic and vegetation patch types that could affect fire spread and ignition frequency.