Assessment of s-Triazine Catabolic Potential in Soil Bacterial Isolates Applying atz Genes as Functional Biomarkers

Fluorescence in situ hybridization (FISH) technique and qPCR analyses, targeting atz genes, were applied to detect the presence of simazine-degrading bacteria in an agricultural soil with a history of herbicide application. atzB-targeted bacteria detected by FISH represented 5% of total soil bacteria with potential capability to metabolize the herbicide. The soil natural attenuation capacity was confirmed in soil microcosms by measuring simazine degradation. Moreover, four bacterial strains were isolated from the soil and identified as Acinetobacter lwoffii, Pseudomonas putida, Rhizobium sp. and Pseudomonas sp. The isolates were able to grow using different s-triazine compounds and related metabolites as the sole carbon source. Growth parameters in presence of simazine were calculated using the Gompertz model. Rhizobium sp. showed the highest simazine degradation (71.2%) and mineralization (38.7%) rates, whereas the lowest values were found to A. lwoffii??50.4% of degradation and 22.4% of mineralization. Results from qPCR analyses of atzA, atzB and atzC genes revealed their presence in Rhizobium sp. and A. lwoffii, being atzB and atzC the most abundant functional genes. Rhizobium sp. showed a higher amount of the three biomarkers compared to A. lwoffii: the atzA, atzB and atzC gene copy number per microlitre were, respectively, 10¹, 10² and 10³-fold higher in the former. Therefore the proposed molecular approaches based on the use of atz genes as biomarkers can be considered as useful tools to evaluate the presence and potential capability of degrading-s-triazines soil microorganisms.     

LED-Induced Chlorophyll Fluorescence Spectral Analysis for the Early Detection and Monitoring of Cadmium Toxicity in Maize Plants

Chlorophyll fluorescence spectral analysis permits detection, monitoring, and evaluation of abiotic stresses upon healthy plants using illumination of a light source in the UV?CVIS spectral range. This technique indirectly assesses the amount of physiological stress caused by photosynthetic damage, specifically damage to photosystem II, in plants. The objective of this study was to detect the toxicity of cadmium in maize plants via spectral analysis of chlorophyll fluorescence. The analysis is noninvasive and nondestructive and is used to follow the temporal evolution of changes in the chlorophyll content and physiological state of Zea mays L. seedlings under cadmium stress. Conventional techniques were also used to evaluate the dry matter production and Cd accumulation in plant leaves. Plants exhibited a notable reduction in dry matter production and chlorophyll levels with the administration of increasing doses of Cd in the nutrient solution. The fluorescence analysis was sensitive to changes caused by Cd in maize plants, detecting damage caused by different treatments before visual symptoms were observed. This technique has a practical application and produces rapid results that can be used in the evaluation of Cd-induced stress in plants and the detection of areas contaminated by this element.     

Aerobic Biological Treatment of Chestnut Processing Wastewater

Chestnut agro-industrial companies consume a high volume of water for washing and processing fruit, generating a large volume of wastewater. This work studied the biodegradation of chestnut processing wastewater through aerobic assays, varying substrate, and biomass concentrations. In general, this wastewater presents a good biodegradability, especially in experiments with relatively low chemical oxygen demand (COD) (0.4 and 0.6?g O₂ L^?1) allowing a COD removal of 85?C90?%. The best results were obtained in the reactor initially loaded with 2?g?L^?1 of biomass and 0.4 or 0.6?g O₂ L^?1 of COD. These experiments also showed high COD removal rates: 4.25 and 3.88?g COD g^?1 volatile suspended solids (VSS) h^?1, respectively. The sedimentation rate, evaluated for different initial values of biomass (1, 2, and 3?g?L^?1), always presented higher values in the experiments with 2 and 3?g?L^?1 of biomass, regardless of the initial COD value used. After comparing different kinetic models (Monod, Contois, and Haldane), it was observed that the Haldane inhibition model satisfactorily describes the COD biodegradation. AQUASIM software allowed calculating the kinetic constant ranges: K _s, 1.59?C6.99?g COD L^?1; ?? _max, 25?C40?g COD g^?1 VSS day^?1; and K _i values, 0.07?C0.11. These kinetic constants corresponds to maximum rates (??*) between 1.48 and 4.25?g COD g^?1 VSS day^?1 for substrate concentrations (S*) from 0.38 to 0.88?g COD L^?1.     

Losing a staging area: Eastward redistribution of Afro-Eurasian ruffs is associated with deteriorating fuelling conditions along the western flyway

The fuelling performance of long-distance migrants at staging areas indicates local conditions and determines the viability of migration routes. Here we present a first case study where long-term fuelling performance was documented along two migration routes with differential population trends. Ruffs (Philomachus pugnax) are shorebirds of inland freshwater wetlands that migrate from the sub-Saharan wintering grounds, via Europe, to the northern Eurasian breeding grounds. Assessments from 2001 to 2008 of fuelling during northward migration at the major western and eastern staging site revealed that daily mass gain rates steeply declined across years in the grasslands for dairy production in Friesland, The Netherlands, and remained constant in the Pripyat floodplains in Belarus, 1500 km further east. Migrants in Friesland decreased from 2001 to 2010 by 66%, amounting to a loss of 21,000 individuals when counts were adjusted for length of stay as determined by resightings. In the same period numbers in Pripyat increased by 12,000. Ruffs individually ringed in Friesland were resighted in subsequent springs at increasingly eastern sites including Pripyat. Our results corroborate published evidence for an eastward redistribution of Arctic breeding ruffs and suggest that the decreasing fuelling rates in the westernmost staging area contribute to this redistribution. The shift implies that responses occur within a single generation. The hypothesis that the choice of route during northward migration may be driven by food availability can now be tested by creating greater areas of wet grasslands in Friesland. When local staging conditions improve we predict that ruffs will make the reverse shift.     

How pristine are tropical forests? An ecological perspective on the pre-Columbian human footprint in Amazonia and implications for contemporary conservation

Archeologists, paleoecologists and anthropologists argue that ecologists need to give greater consideration to the pre-historical influence of humans in shaping the current structure and composition of tropical forests. We examine these arguments within the context of Amazonia, and assess the extent to which (i) the concepts of “pristine forests” and “cultural parklands” are mutually exclusive, (ii) the aggregated distribution of some plants necessarily indicates enrichment planting, (iii) pre-Columbian human disturbance has increased forest biodiversity, (iv) pre-Columbian indigenous practices were always sustainable, and (v) if indeed, the ecological impacts of pre-Columbian peoples are relevant for modern biodiversity conservation. Overall, we reject the notion that “the pristine myth has been thoroughly debunked” by archeological evidence, and suggest that the environmental impacts of historical peoples occurred along gradients, with high-impacts in settlements and patches of Amazonian Dark Earth (ADE), lesser impacts where occasional enrichment planting took place in forests surrounding agricultural plots, and a very low influence (in terms of light hunting pressure and other types of resource extraction) across vast areas of Amazonia that may always have been far from permanent settlements and navigable rivers. We suggest that the spatial distribution of pre-Columbian finds is given more attention, and urge caution before case studies are extrapolated to the entire Basin. Above all, we feel that debates over “naturalness” and environmental impacts of pre-Columbian humans are of limited relevance to present and future biodiversity conservation, and can detract from the major challenges facing Amazonia and other tropical forest regions today.     

Late nitrogen fertilization affects nitrogen remobilization in wheat

A pot experiment with wheat plants was carried out to study how late application of nitrogen (N) fertilizer affects the use of pre‐anthesis N reserves during the grain‐filling period. Increasing doses of N fertilizer were applied (0, 40, and 52 mg N plant^–1), either in two amendments (growth stages GS20 and GS30, according to Zadoks scale) or in three amendments (GS20, GS30, and GS37). The experiment was arranged in a complete randomized three‐block design with 129 plants per treatment. The plants were watered daily, harvested every 2 d between anthesis and maturity, and were separated into roots, leaf sheaths, leaf blades, and ears for further N determination. Grain N concentration improved due to a late N application in GS37 by 14% (higher N dose) and by 7% (further splitting the same N‐fertilizer dose, respectively). The higher the N‐fertilizer dose applied, the greater was the amount of pre‐anthesis reserves in vegetative organs, these reserves became later available for remobilization. Although splitting the same N dose in three amendments did not increase the N reserves, these reserves were more efficiently remobilized allowing an improvement in grain N concentration. The fertilizer management did not change the temporary pattern of N accumulation in the ear, but did induce a change in the amount of N remobilized and in the contribution of each organ (root, leaf sheath, leaf blade) to this remobilization. Late N amendment allowed a greater N availability of leaf blades and ear N reserves (from 20% up to 26% and from 19% up to 22%, respectively) for remobilization towards the grain, decreasing the root contribution from 28% down to 15%, while the contribution of leaf sheaths was maintained around 35% irrespective of the N applied.     

Dynamic oxygen mapping in the root zone by fluorescence dye imaging combined with neutron radiography

Purpose  

The rooted zone of a soil, more precisely the rhizosphere, is a very dynamic system. Some of the key processes are water uptake and root respiration. We have developed a novel method for measuring the real-time distribution of water and oxygen concentration in the rhizosphere as a biogeochemical interface in soil. This enables understanding where and when roots are active in respect to root respiration and water uptake and how the soil responds to it.     

Evolution and phosphorus fractionation in saline Spolic Technosols flooded with eutrophic water

Purpose

The aim of this study was to evaluate the behaviour of P in saline Spolic Technosols flooded with eutrophic water, with and without plant rhizosphere, in order to assess the role of these soils as sinks or sources of this nutrient.

Materials and methods

Samples were taken from basic (pH?~7.8), carbonated and acidic (pH?~6.2), de-carbonated soils of salt marshes polluted by mine wastes. Three treatments were assayed: pots with Sarcocornia fruticosa, pots with Phragmites australis and pots without plants (bare soil). The pots were flooded for 15?weeks with eutrophic water (PO ₄ ^3? ~6.92?mg?L^?1) and pH, Eh and water-soluble organic carbon and PO ₄ ^3? concentrations were monitored in the soil solution. A soil P fractionation was applied before and after the flooding period.

Results and discussion

The PO ₄ ^3? concentration in the soil solution decreased rapidly in both soils, with and without plant, being diminished by 80?C90?% after 3?h of flooding. The Fe/Mn/Al oxides and the Ca/Mg compounds played an important role in soil P retention. In pots with S. fruticosa, the reductive conditions due to flooding induced P release from metal oxides and P retention to Ca/Mg compounds. In turn, P. australis may have favoured the release of P from carbonates, which was transferred to Fe/Mn/Al compounds.

Conclusions

The retention of P by the soil was the main mechanism involved in the removal of PO ₄ ^3? from the eutrophic flooding water but to evaluate the capacity of these systems as long-term P sinks, the combined effect of metals, Ca/Mg compounds and specific plant species should be considered.     

Aged Garlic Extract Attenuates Cerebral Damage and Cyclooxygenase-2 Induction after Ischemia and Reperfusion in Rats

Different garlic products reduce the cerebral ischemic damage due to their antioxidant properties. In this work, we investigated the effect of aged garlic extract (AGE) on cyclooxygenase-2 (COX-2) protein levels and activity, and its role as a possible mechanism of neuroprotection in a cerebral ischemia model. Animals were subjected to 1 h of ischemia plus 24 h of reperfusion. AGE (1.2 ml/kg weight, i.p.) was administered at onset of reperfusion. To evaluate the damage induced by cerebral ischemia, the neurological deficit, the infarct area, and the histological alterations were measured. As an oxidative stress marker to deoxyribonucleic acid, 8-hydroxy-2-deoxyguanosine (8-OHdG) levels were determined. Finally, as inflammatory markers, TNFα levels and COX-2 protein levels and activity were measured. AGE treatment diminished the neurological alterations (61.6%), the infarct area (54.8%) and the histological damage (37.7%) induced by cerebral ischemia. AGE administration attenuated the increase in 8-OHdG levels (77.8%), in TNFα levels (76.6%), and in COX-2 protein levels (73.6%) and activity (30.7%) induced after 1 h of ischemia plus 24 h of reperfusion. These data suggest that the neuroprotective effect of AGE is associated not only to its antioxidant properties, but also with its capacity to diminish the increase in TNFα levels and COX-2 protein expression and activity. AGE may have the potential to attenuate the cerebral ischemia-induced inflammation.