Maedi in slaughtered sheep: A pathology and polymerase chain reaction study in southwestern Iran

Maedi-visna (MV) is an important slow viral disease of sheep leading to a progressive lymphoproliferative disease. It affects multiple organs primarily the lungs, where it causes interstitial pneumonia (maedi). In this study, the lungs of 1,000 sheep carcasses were grossly inspected and those suspected to have maedi were studied at histopathological and molecular levels. A polymerase chain reaction (PCR) technique that amplified a 291-base pair DNA in the long terminal repeat (LTR) sequence of MV provirus was conducted on all the 50 suspected lungs together with 10 normal appearing lungs as controls. Amplicons of the expected size were detected in 11 (n = 11/50) suspected sheep, and one of the 10 control sheep. Histopathologic study of the pulmonary lesions of all 11 (n = 11/11) positive sheep showed MV lesions, including hyperplasia of the perivascular and peribronchiolar lymphoid cells, interstitial lymphoplasmacytic infiltration and smooth muscle hyperplasia and the histopathologic findings were correlated with PCR results. In contrast, the tissue sections of control animals were almost normal at histopathological level; however, PCR technique demonstrated that one of them was affected by maedi. This study showed that the LTR-PCR had high specificity and sensitivity in diagnosis of this viral infection. This study is the first to evaluate the prevalence of MV virus infection in sheep in Iran.     

Oocyte maturation,embryo development and gene expression following two different methods of bovine cumulus-oocyte complexes vitrification

Objective

To examine the maturational competence, embryo development and expression of genes involved in oocyte maturation and cumulus expansion (GDF9, BMP15, HAS2, TNFAIP6, FGF17 and FSHr) following two standard methods of bovine COCs vitrification.

Methods

Bovine cumulus-oocyte complexes (COCs) were aspirated from slaughtered ovaries and then distributed into three groups: non-vitrified COCs (control), vitrification 1 group (V1); vitrification was performed by 15% ethylene glycol (EG) and 15% DMSO in holding media (TCM-199 with 20% FCS); and vitrification 2 group (V2); vitrification was performed by 40% EG in holding media. After vitrification, COCs were warmed in two steps and cultured and then evaluated for nuclear maturation, embryo development and gene expressions.

Results

The mean (±SD) percentages of nuclear maturation and blastocyst/cleaved were higher in control group (79.5 ± 8.0 and 31.0 ± 5.1%) than the V1 (34.8 ± 9.1 and 4.4 ± 5.1%) and V2 (47.8 ± 11.7 and 7.1 ± 5.8%) groups (P < 0.05), respectively. Further, COCs in V2 group showed higher mean (±SD) percentages of cleavage compared to V1 group (31.8 ± 1.0 vs 21.7 ± 2.8%; P < 0.05). GDF9 and BMP15 expression levels were higher in COCs in the control than of the vitrification groups (P < 0.05). In addition, expression level of GDF9 and BMP15 was higher in V2 group than in V1group (P < 0.05). The expression of HAS2 and FGF17 in V1 group was lower (P < 0.05) than that of the V2 groups.

Conclusions

Expression of oocyte maturation genes was affected by vitrification procedure and conditions. Using EG alone for vitrification of bovine immature COCs, resulted in higher expression of GDF9, BMP15 and production of more in vitro matured and cleaved oocytes.

     

Estimating soil hydraulic conductivity using different data-driven models of ANN,GMDH and GMDH-HS

The saturated hydraulic conductivity (\(K_{\text{s}}\)) is one of the important soil hydraulic properties which plays a significant role in developing flow transport models and irrigation and drainage practices. In this research, artificial neural networks approaches, group method of data handling (GMDH) model and a hybrid intelligent model based on combination of GMDH and harmony search (HS) model (GMDH-HS) were developed to estimate \(K_{\text{s}}\) based on 151 field samples collected from the northeast of Iran. Eleven topsoil properties were used as input parameters to estimate \(K_{\text{s}}\). The five quantitative standard statistical performance evaluation measures, i.e., coefficient of efficiency, root-mean-square error, mean square relative error, mean absolute percentage error and relative bias, were employed to evaluate the performance of various developed models. Statistical results indicated that the best performance can be obtained by GMDH-HS in terms of different evaluated criteria during the training and testing datasets for \(K_{\text{s}}\) estimation.     

Potential habitat modeling for reintroduction of three native plant species in central Iran

Potential habitat modeling of endemic species is an appropriate method to maintain biodiversity,ecosystem function and rehabilitation of rangeland ecosystems.Astragalus caragana,A.cyclophyllon and A.podolobus are endemic in Iran's rangelands and some neighboring countries.The three native species could endure environmental stresses due to their distinctive ecophysiological characteristics.They play important roles in sustainable pastures production,recreation and improvement.They suffer severe threat from many factors including;grazing,agriculture and invasive exotic species.We analyzed the potential habitat of three native plant species in central Iran basing on the grid map with the resolution of 1-km.We used inventory records from field surveys,herbarium collections and 22 environmental factors to explore the environmental influences on given species distribution by Maximum entropy(Maxent) model.Maxent is a species distribution model that uses species occurrence and environmental data for predicting potential species.The results of our study indicated species occurrence has strong correlation with environmental factors such as mean temperature of wettest season,elevation and precipitation of coldest season.We evaluated the model accuracy by AUC(area under the receiver operating characteristic curve) based on an independent test data set.AUC values indicated the high power of Maxent to create potential habitat map(AUCA.caragana=0.988,AUCA.cyclophyllon=0.927,AUCA.podolobus=0.923).It is important to consider that AUC values tend to be lower for species that have broad distribution scope,such as A.podolobus distribution.Most suitable potential habitat distributions of the three species were predicted in the western and southwestern parts of rangelands in Isfahan province.Visual comparisons of the actual distribution map of the three species with produced Maxent maps represent a good agreement.In general,the model demonstrated that the occurrence of the given species is highly probable when the elevation is between 2,200 and 3,000 m and mean temperature of wettest season less than 3°C.This model,therefore,can be applied to recognize potential sites for rangeland reclamation projects.     

Investigation of physico-chemical properties and antioxidant activity of twenty Iranian pomegranate (Punica granatum L.) cultivars

Pomegranate is one of the native fruits of Iran which contains high genetic resources, but there are insufficient information regarding properties of the fruit. The objective of the present study was to investigate the physcio-chemical characteristics and antioxidant activity of twenty pomegranate cultivars grown in Iran. This study showed that there were significant differences among the cultivars in all measured factors except the length/diameter ratio of fruit. The fruit weight, skin percentage, aril percentage and juice percentage were within the range of 196.89–315.28 g, 32.28–59.82%, 37.59–65% and 26.95–46.55%, respectively. The total soluble solids content varied from 11.37 (°Brix) to 15.07 (°Brix), pH values from 3.16 to 4.09, titratable acidity content from 0.33 g 100 g⁻¹ to 2.44 g 100 g⁻¹ and total sugars content from 13.23 g 100 g⁻¹ to 21.72 g 100 g⁻¹. The results also showed that the values of ascorbic acid ranged from 9.91 mg 100 g⁻¹ to 20.92 mg 100 g⁻¹. The total anthocyanins content was observed in pomegranate cultivars between 5.56  mg 100 g⁻¹ and 30.11 mg 100 g⁻¹. The level of total phenolics was varied from 295.79 mg 100 g⁻¹ to 985.37 mg 100 g⁻¹. The antioxidant activity of pomegranate cultivars was found between 15.59 and 40.72%. These data demonstrated that the cultivar was the main parameter which influences the physico-chemical properties and antioxidant activity in pomegranates.     

Genetic diversity and population genetic structure of pomegranate (Punica granatum L.) in Iran using AFLP markers

Pomegranate (Punica granatum L.) is one of the oldest known edible fruits. It is native to Iran and spread from Iran to other areas. In this study amplified fragment length polymorphism (AFLP) was used to detect intra- and inter-population genetic diversity of pomegranate. A group of 67 accessions belonged to 4 populations from Iran was studied using eight primer combinations. A total of 221 scorable bands were amplified, of which, 118 (54.13%) were polymorphic. Resolving power (Rp) ranged from 5.70 to 9.21, and the average of polymorphism information content (PIC) per primer pair was 0.40. According to Nei's gene diversity and allelic statistics, Isfahan population had a highest genetic diversity (H = 0.3646, I = 0.5327, N_e = 1.6467). Coefficient of gene differentiation between populations (GST) was 0.124, indicated that mainly proportion of genetic variation (87.6%), was within populations and the remaining (12.4%) of the variation was among populations that, also supported by analysis of molecular variance (AMOVA). The gene flow (Nm) varied from 0.969 to 10.404 between pair-wise populations and was 3.504 among all of the populations. The Jaccard similarity coefficient between individuals ranged from 0.26 to 0.88. The UPGMA dendrogram clustered all 67 accessions into 6 groups. In some cases accessions from same region were grouped together but in most cases, there was gene exchange. To study the genetic relationships among populations, a principal coordinate analysis (PCoA) based on Nei's genetic distances was performed. Results of this study showed that AFLP marker can be a useful tool for investigating the genetic diversity of pomegranate genotypes.     

Genetic diversity and gene-pool subdivisions of diploid D-genome <Emphasis Type="Italic">Aegilops tauschii</Emphasis> Coss. (Poaceae) in Iran as revealed by AFLP

The diploid goatgrass Aegilops tauschii is considered the D-genome donor of bread wheat and has probably a centre of diversity in north of Iran. In order to measure the genetic diversity of and the relationships among different populations, varieties and subspecies belonging to Ae. tauschii in Iran, DNA was extracted from 48 accessions of Ae. tauschii collected across the geographic range of the species in the Country and the genetic diversity was assessed using AFLPs based on eight PstI/MseI +3 primer pairs resulted in 277 bands, 198 of which were polymorphic. High level polymorphism was detected, with an average of polymorphism rate of 0.715; relatively low genetic similarity (0.455) between accessions and significant difference between the lowest (0.179) and the highest genetic similarity (0.817). The Iranian Ae. tauschii populations showed high level of genetic diversity. The populations studied were divided into two groups: one group was mainly representing Northern populations collected from Southern Caspian Sea shore and the other group was mainly representing Northeast and Northwest populations. Based on the results of this study, it can be suggested that Ae. tauschii possesses two separate gene-pools in Iran: Northern and Northeastern–Northwestern. Considering the needs for introducing new characteristics and alleles for wheat improvement purposes, Ae. tauschii Iranian gene-pool is assumed to be of high importance for more investigation in the future.     

Influence of Plant Growth Promoting Rhizobacteria,Compost, and Biochar of Azolla on Rosemary (Rosmarinus Officinalis L.) Growth and Some Soil Quality Indicators in a Calcareous Soil

In order to study the effect of plant growth promoting rhizobacteria (PGPR), Azolla compost and Azolla biochar on some soil quality indicators and rosemary growth, a greenhouse experiment was conducted in a completely randomized design with six replications. Treatments consisted of T₁ (control), T₂ (1% Azolla compost), T₃ (1% Azolla biochar), T₄ (PGPR (P. fluorescens), T₅ (1% compost + PGPR) and T₆ (1% biochar + PGPR). Rosemary growth parameters and nutrients concentration increased in all treatments compared to control. Treatments increased soil nutrient concentrations, soil microbial respiration (SMR) and microbial biomass C (MBC) but decreased soil metabolic quotient (qCO₂) compared to control treatment. A significant enhancement in rosemary growth occurred due to the improved soil quality as a result of organic fertilizers application, particularly by co-application of P. fluorescens and compost or biochar of Azolla.     

The potential of using insecticidal properties of medicinal plants against insect pests

In this study, botanicals extracted from two the species of family Scrophulariaceae, Verbascum cheiranthifolium Boiss and Verbascum speciosum Schard, were examined for their effect on mortality and progeny production against adults of Sitophilus oryzae (L.). The plant extracts were applied at five dose rates, which 0.25, 0.5, 1.0, 2.0 and 3% (w/v). Adults of S. oryzae was exposed to the treated wheat at 25 degrees C and 65% RH and mortality was assessed after 24 h, 48 h, 7 day, 14 day and 21 day of exposure. Then all adults were removed and the treated substrate remained at the same conditions for an additional 45 day after this interval, the commodity was checked for progeny production. In use two extracts the mortality of adults increased with the increase of dose and exposure interval so that; mortality was 100% after 21 days of exposure at the highest dose rate. Results indicated that applied of V. cheiranthifolium extract was more effective than V. speciosum against adult insects. Interestingly, in two cases complete suppression (100% reduction) of the progeny production (F1) was observed in the treated wheat than in control even in the lowest dose rate. Therefore, our results indicate that these medicinal plants can be used for protection of stored grain from infestations of stored-product insect pests.