Spatial and temporal variations of sediment quality in and around fish cage farms: A case study of aquaculture in the Seto Inland Sea, Japan

ABSTRACT: Fish cage farming generates large amounts of organic waste in the form of unconsumed feed and fecal matter, resulting in sediment deterioration and a threat to its own sustainability. Field studies analysed the scale of the impact of fish cage farming on sediment quality, variability of impact and spread of sediment enrichment in the vicinity of a fish farm. Two fish culture sites near the Fukuyama area of the Seto Inland Sea of Japan were chosen for the study. There was a significant difference between the quality of the sediment in aquaculture and non-aquaculture areas. The sediment underlying the fish cage farms was found to be extremely reducing, acidic and sulfidic. Sediment ignition loss did not vary markedly with the season. However, the redox potential and acid volatile sulfide content of aquaculture areas did show some seasonal variation. Sediment encircling a 165 m radius from the center of a farm in Yokota was judged as organically enriched by fish farming. A variation in sediment quality within the two sites and also within the stations was observed. Based on sediment quality, the stations could be categorized as less affected, highly affected or moderately affected.     

Oxygen deficiency during somitogenesis causes centrum defects in red sea bream, Pagrus major (Temminck et Schlegel)

Vertebral deformities in red sea bream, Pagrus major, remain serious obstacles to the improvement of seedling quality for its aquaculture. However, the causalities of the deformities remain unclear and prevention methods have not yet been established. In this paper, oxygen deficiency during somitogenesis was demonstrated to cause centrum defects (formerly called fused vertebrae in many cases), which are the major vertebral deformity in cultured red sea bream. An induction experiment of centrum defects was conducted by placing fertilized red sea bream eggs under low dissolved oxygen conditions (10.3–16.6%). The low oxygen treatment was carried out for five different developmental stages of embryo: two‐cell stage to blastula stage; gastrula stage; three to 10 somites stage; 11–17 somites stage and 18–24 somites stage. Oxygen deficiency during somitogenesis induced a high incidence of centrum defects. In contrast, it hardly induced centrum defects during the other stages. The dissolved oxygen concentration in the rearing water should be carefully regulated for fertilized eggs, especially during somitogenesis to reduce the incidence of vertebral deformities in the red sea bream.     

First report of triploidy in Ailanthus altissima,an invasive tree species

Ailanthus altissima is a woody plant that has become invasively naturalized in many countries. Using nuclear SSR markers, we studied specimens of this species collected throughout Japan and found an individual (labeled Aa-1) that was not diploid. We examined pollen morphology and ploidy level of Aa-1 by optical microscopy and flow cytometry (FCM), respectively. Some pollen grains were morphologically abnormal and much larger than normal. FCM analysis demonstrated that Aa-1 was triploid. Formation of abnormal pollen indicates that Aa-1 may well have reduced fertility compared to normal diploids. If this were the case, vegetative progeny Aa-1 could be used as ornamentals without attendant risks of future naturalization.     

Twenty-three years of stand dynamics in an old-growth Chamaecyparis forest in central Japan

Structures and dynamics of old-growth coniferous stands are affected by several types of disturbances including typhoons. We report the forest dynamics of four old-growth Chamaecyparis stands in central Japan that differ in the disturbance history of typhoons over a period of 23 years. The stem number, basal area and mortality were examined. In a predominant stand of C. obtusa (Sieb. et Zucc.) Endl., 24 % of the C. obtusa canopy trees died, mainly as a result of the severe damage of a strong typhoon that caused a single tree-fall gap and the following gap enlargements. In this stand, the total basal area decreased to 76.5 % of the initial value, although the mortality declined in recent years. In contrast, the other three stands decreased only slightly in the stem numbers (0.0–5.6 %) and increased in the basal areas of C. obtusa canopy trees. It is confirmed that the stand-level ingrowths of 300-year-old C. obtusa canopy trees could contribute to the increase in the stock of each stand. Our results support an idea that the dynamics of old-growth Chamaecyparis forests were greatly affected by typhoons. The stand structures will be gradually changed (with the processes of gap dynamics) and C. obtusa will continue to be dominant, potentially over hundreds of years.     

海水倒灌农田土壤盐分空间变异特征

以海南省海口市三江农场为研究区域,采集并化验海水倒灌后土壤样品191份,利用地统计学方法和空间插值法对区域土壤盐分空间变异特征进行了研究。结果表明:14个土层中土壤盐分的均值最大的为0~5 cm土层,土壤盐分平均含量达到9.63 g/kg,最小的是20~40 cm土层,盐分平均含量仅为4.36 g/kg;24个土层中第一层(0~5 cm)土壤盐分含量属弱相关性,第四层(20~40 cm)土层属于剧烈空间自相关性;3各土层土壤盐分分布格局差异明显,含盐量1 g/kg的各土层均没有分布;含盐量1~3和3~5 g/kg两个级别随着土层深度的增加面积逐渐增大,9 g/kg的级别则面积逐渐减少。不同深度土壤层土壤盐分含量差异明显,空间变异特征各不相同,总体呈现土壤盐分表聚特征。     

A practical method for apple cultivar identification and parent-offspring analysis using simple sequence repeat markers

Differentiation of cultivars with simple sequence repeat (SSR) markers is a very useful technique for the true-to-type characterization of cultivars and clarification of parent-offspring relationships. We developed an SSR marker set for cultivar identification comprising 15 markers that were screened from 46 previously published SSRs. This marker set could be used for apple varieties including Malus × domestica and/or other Malus species. These SSRs successfully characterized 95 apples, including the leading and major founding cultivars used worldwide for modern apple breeding. Therefore, this marker set could be applied to almost all apple cultivars. We also analyzed the parent-offspring relationships of 69 cultivars by considering allele transmissions. This analysis revealed the true parentage of the following seven cultivars: ‘Kizashi’, ‘Chinatsu’, ‘Honey Queen’, ‘Haruka’, ‘Seirin’, ‘Ozenokurenai’, and Morioka #48. This analysis also revealed a parentage discrepancy for ‘Hacnine’. From the parent-offspring analysis, two microsatellite mutation events at alleles inherited from pollen parents were observed.     

Genetic analysis and identification of DNA markers linked to a novel Phytophthora sojae resistance gene in the Japanese soybean cultivar Waseshiroge

The Glycine max (L.) Merr. cultivar Waseshiroge is highly resistant to several races of Phytophthora sojae in Japan. In order to determine which Rps gene might be present in Waseshiroge, 15 differential cultivars were challenged with 12 P. sojae isolates. None had a reaction pattern identical to that of Waseshiroge, indicating that Waseshiroge may contain a novel Rps gene. In order to characterize the inheritance of Waseshiroge resistance to P. sojae isolates, 98 F₂ progeny and 94 F_7:8 lines were produced from crosses between the susceptible cultivar Tanbakuro and Waseshiroge. Chi-square tests indicated that segregation fit a 3:1 ratio for resistance and susceptibility in two F₂ sub-populations of 42 and 56 seedlings. This and a 46.27:1.46:46.27 (or 63:2:63) ratio for resistance: segregation: susceptibility among the 94 F_7:8 lines indicated that resistance was controlled by a single dominant gene. DNA analyses were carried out on Tanbakuro, Waseshiroge and the 94 F_7:8 lines, and a linkage map was constructed with 17 SSR markers and nine new primer pairs that amplify marker loci linked to Rps1 on soybean chromosome 3 (linkage group N). The closest markers, Satt009 and T000304487l, map to locations 0.9 and 1.6 cM on each side of the estimated position of the Rps gene, respectively. The results showed that the Rps gene in Waseshiroge is either allelic to Rps1, or resides at a tightly linked locus in a gene cluster. A three-way-contingency table analysis indicated that marker-assisted selection with the two flanking markers could be used in the development of new resistant cultivars.     

Application of USLE for the prediction of nutrient losses in soil erosion processes

Soil erosion in agricultural fields affects not only land productivity but also water environment down stream. Many investigations have been made for the prediction of soil erosion processes. The Universal Soil Loss Equation (USLE) has been applied broadly for the prediction of average annual soil loss from upland fields. However, there are few reports concerning the prediction of nutrient (N, P) losses based on the USLE. Thus, the objective of this study is to propose the prediction equation of nitrogen and phosphorus losses during soil erosion processes on the basis of the USLE. In order to predict total nitrogen and phosphorus losses, the coefficients for total nitrogen or phosphorus transfer are derived on the basis of results from experimental field plots. Three bare-cover USLE plots with different amounts of granular chemical fertilizer were installed in an experimental upland field. There was a tendency for the coefficient of total nitrogen or phosphorus transfer to increase with the average concentration of total nitrogen or phosphorus in the soils. It follows that the more granular chemical fertilizer applied caused a higher coefficient of total nitrogen or phosphorus transfer in the calculations. Moreover, the coefficients in heavily fertilized plots were higher than 1.0. Through this investigation, it became clear that the nutrient losses during soil erosion could be predicted on the basis of the coefficient of total nitrogen or phosphorus transfer along with other soil erosion parameters.     

基于MaxEnt模型预测外来入侵植物刺果瓜在中国的潜在地理分布

为明确外来入侵植物刺果瓜 Sicyos angulatus在我国的潜在地理分布,基于MaxEnt模型、ArcGIS软件及全球分布数据,在历史气候条件及未来气候条件下 （低强迫情景SSP126和高强迫情景SSP585）预测刺果瓜在中国的潜在地理分布。结果显示, MaxEnt模型的曲线下面积（area undercurve, AUC）值为0.977,表明模型具有较高的可靠性;气温季节性变化、最热月的最高温、最干月降水量和最湿季节的降水量是影响刺果瓜在中国潜在地理分布的4个关键环境变量;历史气候条件下刺果瓜主要发生在中国东部、中部和西部,适生区总面积占中国陆地总面积的23.29%;未来气候条件下,刺果瓜在中国的适生区范围有所减少, SSP126和SSP585情景下刺果瓜在中国的适生区总面积分别为186.10×10⁴ km²和162.68×10⁴ km²,分别占中国陆地总面积的19.35%和16.91%,但还是主要覆盖黄淮海平原夏播玉米区和南方丘陵玉米区等产区,质心由南向北移动。