The role of learning in fish orientation

Past research on fish orientation and migration has tended to focus on genetically fixed patterns of behaviour. However, in most aquatic environments, the physical landscape as well as biologically important locations will be subject to varying degrees of change, favouring an ability to learn. Here, we review the evidence from field and laboratory‐based experiments that fish can and do use learning and memory to orientate within their natural environments, relying on information from a diverse array of different sources. Comparisons of different species and populations suggest that fish may be predisposed to learn specific associations at specific times or places, appropriate for the particular navigational problems that they are likely to encounter.     

The impact of arbuscular mycorrhizal fungi on strawberry tolerance to root damage and drought stress

Individually, arbuscular mycorrhizal fungi (AMF), drought stress, and root damage can alter terrestrial plant performance but the joint effects of these three factors have not been explored. Because AMF can improve water relations, colonization by these root symbionts may increase the host’s tolerance of drought especially when roots have been compromised by herbivory. This full factorial study examined effects of AMF, water deficit, and artificial root herbivory in three genotypes of wild strawberry, Fragaria virginiana Duchesne that originated from the same restored tallgrass prairie as the AMF inoculum. Drought stress and root damage altered allocation to roots vs. shoots but the effects were not additive and the interaction did not depend on AMF treatment. Effects of AMF were absent with one exception: root damage significantly reduced belowground mass only in plants inoculated with AMF. Although drought stress did not interact with the AMF treatment, both drought stress and root damage reduced the abundance of arbuscules, and especially vesicles, and colonization varied among genotypes. Failure to detect strong effects of AMF on host growth could be due to variable responses of individual AMF species summing to no net effects. Functionally, AMF were primarily commensals of strawberry in this study.     

Spatio-temporal heterogeneity effects on seedling growth and establishment in four <Emphasis Type="Italic">Quercus</Emphasis> species

Introduction   

The great spatial and temporal heterogeneity of Mediterranean ecosystems can influence establishment success in woody species, whose natural regeneration occurs to a very small extent. In this work, the effect of the spatial pattern of environmental variables (light availability, soil moisture and herbaceous production) on seedling emergence, growth, survival and establishment success was examined by using a spatially explicit approach.     

Conserved structure for single-stranded telomeric DNA recognition

The essential Cdc13 protein in the yeast Saccharomyces cerevisiae is a single-stranded telomeric DNA binding protein required for chromosome end protection and telomere replication. Here we report the solution structure of the Cdc13 DNA binding domain in complex with telomeric DNA. The structure reveals the use of a single OB (oligonucleotide/oligosaccharide binding) fold augmented by an unusually large loop for DNA recognition. This OB fold is structurally similar to OB folds found in the ciliated protozoan telomere end-binding protein, although no sequence similarity is apparent between them. The common usage of an OB fold for telomeric DNA interaction demonstrates conservation of end-protection mechanisms among eukaryotes.     

Platforms for collective action in multiple-use common-pool resources

Collective action processes in complex, multiple-use common-pool resources (CPRs) have only recently become a focus of study. When CPRs evolve into more complex systems, resource use by separate user groups becomes increasingly interdependent. This implies, amongst others, that the institutional framework governing resource use has to be re-negotiated to avoid adverse impacts associated with the increased access of any new stakeholders, such as overexploitation, alienation of traditional users, and inter-user conflicts. The establishment of platforms for resource use negotiation is a way of dealing with complex natural resource management problems. Platforms arise when stakeholders perceive the same resource management problem, realize their interdependence in solving it, and come together to agree on action strategies for solving the problem (Röling, 1994). This article sets the scene for a discussion in this Special Issue about the potential of nested platforms for resource use negotiation in facilitating collective action in the management of complex, multiple-use CPRs. The article has five objectives. First, we define collective action in the context of this paper. Second, we discuss the importance of collective action in multiple-use CPRs. Third, we introduce the concept of platforms to coordinate collective action by multiple users. Fourth, we address some issues that emerge from evidence in the field regarding the role and potential of nested platforms for managing complex CPRs. Finally, we raise five discussion statements. These will form the basis for the collection of articles in this special issue.     

Architecture of succinate dehydrogenase and reactive oxygen species generation

The structure of Escherichia coli succinate dehydrogenase (SQR), analogous to the mitochondrial respiratory complex II, has been determined, revealing the electron transport pathway from the electron donor, succinate, to the terminal electron acceptor, ubiquinone. It was found that the SQR redox centers are arranged in a manner that aids the prevention of reactive oxygen species (ROS) formation at the flavin adenine dinucleotide. This is likely to be the main reason SQR is expressed during aerobic respiration rather than the related enzyme fumarate reductase, which produces high levels of ROS. Furthermore, symptoms of genetic disorders associated with mitochondrial SQR mutations may be a result of ROS formation resulting from impaired electron transport in the enzyme.     

Bond-selective control of a heterogeneously catalyzed reaction

Energy redistribution, including the many phonon-assisted and electronically assisted energy-exchange processes at a gas-metal interface, can hamper vibrationally mediated selectivity in chemical reactions. We establish that these limitations do not prevent bond-selective control of a heterogeneously catalyzed reaction. State-resolved gas-surface scattering measurements show that the nu1 C-H stretch vibration in trideuteromethane (CHD3) selectively activates C-H bond cleavage on a Ni(111) surface. Isotope-resolved detection reveals a CD3:CHD2 product ratio > 30:1, which contrasts with the 1:3 ratio for an isoenergetic ensemble of CHD3 whose vibrations are statistically populated. Recent studies of vibrational energy redistribution in the gas and condensed phases suggest that other gas-surface reactions with similar vibrational energy flow dynamics might also be candidates for such bond-selective control.     

Impact of anthropogenic CO2 on the CaCO3 system in the oceans

Rising atmospheric carbon dioxide (CO2) concentrations over the past two centuries have led to greater CO2 uptake by the oceans. This acidification process has changed the saturation state of the oceans with respect to calcium carbonate (CaCO3) particles. Here we estimate the in situ CaCO3 dissolution rates for the global oceans from total alkalinity and chlorofluorocarbon data, and we also discuss the future impacts of anthropogenic CO2 on CaCO3 shell-forming species. CaCO3 dissolution rates, ranging from 0.003 to 1.2 micromoles per kilogram per year, are observed beginning near the aragonite saturation horizon. The total water column CaCO3 dissolution rate for the global oceans is approximately 0.5 +/- 0.2 petagrams of CaCO3-C per year, which is approximately 45 to 65% of the export production of CaCO3.