Self-assembly of large and small molecules into hierarchically ordered sacs and membranes

We report here the self-assembly of macroscopic sacs and membranes at the interface between two aqueous solutions, one containing a megadalton polymer and the other, small self-assembling molecules bearing opposite charge. The resulting structures have a highly ordered architecture in which nanofiber bundles align and reorient by nearly 90 degrees as the membrane grows. The formation of a diffusion barrier upon contact between the two liquids prevents their chaotic mixing. We hypothesize that growth of the membrane is then driven by a dynamic synergy between osmotic pressure of ions and static self-assembly. These robust, self-sealing macroscopic structures offer opportunities in many areas, including the formation of privileged environments for cells, immune barriers, new biological assays, and self-assembly of ordered thick membranes for diverse applications.     

Tracing the origin and fate of NOx in the Arctic atmosphere using stable isotopes in nitrate

Atmospheric nitrogen oxides (NOx =NO+ NO2) play a pivotal role in the cycling of reactive nitrogen (ultimately deposited as nitrate) and the oxidative capacity of the atmosphere. Combined measurements of nitrogen and oxygen stable isotope ratios of nitrate collected in the Arctic atmosphere were used to infer the origin and fate of NOx and nitrate on a seasonal basis. In spring, photochemically driven emissions of reactive nitrogen from the snowpack into the atmosphere make local oxidation of NOx by bromine oxide the major contributor to the nitrate budget. The comprehensive isotopic composition of nitrate provides strong constraints on the relative importance of the key atmospheric oxidants in the present atmosphere, with the potential for extension into the past using ice cores.     

The ecoresponsive genome of Daphnia pulex

We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200 megabases and contains at least 30,907 genes. The high gene count is a consequence of an elevated rate of gene duplication resulting in tandem gene clusters. More than a third of Daphnia's genes have no detectable homologs in any other available proteome, and the most amplified gene families are specific to the Daphnia lineage. The coexpansion of gene families interacting within metabolic pathways suggests that the maintenance of duplicated genes is not random, and the analysis of gene expression under different environmental conditions reveals that numerous paralogs acquire divergent expression patterns soon after duplication. Daphnia-specific genes, including many additional loci within sequenced regions that are otherwise devoid of annotations, are the most responsive genes to ecological challenges.     

Susceptibility of the Mexican bean beetle <Emphasis Type="Italic">Epilachna varivestis</Emphasis> Mulsant (Coleoptera: Coccinellidae) to endemic isolates of <Emphasis Type="Italic">Beauveria bassiana</Emphasis> (Balsamo) Vuillemin (Hypocreales: Clavicipitaceae)

Entomopathogenic fungi represent excellent candidates for biological insecticides. Among the many entomopathogenic fungi, Beauveria bassiana (Balsamo) Vuillemin (Hypocreales: Clavicipitaceae) is one of the most promising species. Here, we report the results of infection studies performed using four B. bassiana native isolates (Bb37, Bb38, Bb40, and Bb45) compared with the commercial product Mycotrol^® (strain GHA) on adult Mexican bean beetle Epilachna varivestis Mulsant (Coleoptera: Coccinellidae), one of the most important pests of bean production in Mexico. First, single concentration (1 × 10⁸ conidia mL^?1) assays were carried out using all isolates applied using an immersion method. Examinations at 10 days after inoculation indicated that isolates Bb37, Bb38, and Bb40 significantly reduced adult survival, causing 60–75% mortality compared to the commercial strain GHA (33%) and control (29%). Second, using two selected isolates (Bb37 and Bb40), the mean lethal concentration values (LC₅₀) were estimated for third instar larvae and adult E. varivestis. The LC₅₀ values for Bb37 and Bb40 isolates decreased 5.26-fold and 3.19-fold, respectively, in third instars compared with adults. However, such difference for Bb40 isolate was not significant. Finally, an experiment, to compare the median survival time (MST) values between third instar and adult E. varivestis, was conducted using Bb37 and Bb40 at 1 × 10⁹ conidia mL^?1. MST values were significantly reduced against larvae (87 and 100 h) compared with adults (130 and 134 h) by Bb37 and Bb40, respectively. We conclude that native isolates of B. bassiana represent an important alternative for the control of E. varivestis. However, to demonstrate its effectiveness under field conditions, detailed studies are needed.     

Proteomic analysis and differential expression in protein extracted from chicken with a varying growth rate and water-holding capacity

Chickens from a randomly bred genetic line were segregated into high and low growth rates and high and low water-holding capacities (WHCs). The objective of this study was to identify protein markers associated with slow and fast growth rates and low and high WHCs from water-soluble protein (WSP) and crude myofibrillar protein (CMP) extracts of chicken breast muscle. Proteins were fractionated using two-dimensional electrophoresis, and a total of 22 protein spots were selected, excised, and analyzed by in-gel tryptic digestion and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Proteins expressed in extracts from slow and fast growth rates and low and high WHCs included metabolic enzymes, such as creatine kinase, pyruvate kinase, triosephosphate isomerase, and ubiqitin; housekeeping proteins, such as heat shock protein; contractile proteins, such as myosin heavy chain; actin; and also MHC isoforms and actin isoforms. The mass spectra of 20 protein spots significantly matched (protein score >83; P < 0.05) an online database. In CMP, there were unique proteins that were present only in the fast-growth population: gi|118099530 , gi|20664362 , gi|71895043 , gi|114794125 , gi|297343122 , and gi|71895043 . This information identified protein markers associated with growth rate and water holding capacity. Some of those protein markers could be added to the chicken database.     

Sustainable Management of Nutrients in Forage-Based Pasture Soils: Effect of Animal Congregation Sites (5 pp)

Background, Aim and Scope   Grazing animals have a dominant effect on the movement and utilization of nutrients through the soil and plant system, and thus on the fertility of pasture soils. Grazing can accelerate and alter the timing of nutrient transfers, and increase the amount of nutrients cycled from plant to soil. Long periods, position of shade, and water resources for grazing cattle can influence the spatial distribution of soil biochemical properties including soil organic carbon (C), total extractable inorganic nitrogen (TEIN), and Melich 1 extractable total phosphorus (TP). The objective of this study is to test whether cattle congregation sites typical on most Florida ranches, such as mineral feeders, water troughs, and shade areas are more nutrient-rich and may contribute more nutrients to surface and groundwater supply than in other pasture locations under Florida conditions. Materials and Methods: Baseline soil samples around and beneath three congregations sites in established (>10 yr) grazed beef cattle pastures at the United States Department of Agriculture (USDA), Agricultural Research Service (ARS), Subtropical Agricultural Research Station (STARS), Brooksville, FL, were collected in 2003, 2004, and 2005. Results: The levels of soil TEIN and TP were significantly (p ≤ 0.001) affected by the interaction of congregation sites and distance away from the center of the sites. Mineral feeders had the highest concentration of TP followed by shades and water troughs. The concentrations of soil TP decreased almost linearly with distance (x = meter) away from the center of the mineral feeders (-5.24x + 55.10; R2 = 0.92; p ≤ 0.001) and the shades (-6.25x + 57.21; R2 = 0.85; p ≤ 0.001). However, the level of TP around the water troughs (-0.25x + 16.91; R2 = 0.09) does not appear to change significantly with distance, staying close to about 13-18 mg kg-1. The levels of TEIN decreased linearly with distance away from the mineral feeders from the center of the shades. A linear model can describe the relationship between TEIN and distance away from the center of shades: -11.3x + 78.2; R2 = 0.95; p ≤ 0.001. The shaded sites (34.25 ± 1.7 mg kg-1) had higher levels than the mineral feeders (7.22 ± 0.60 mg kg-1) or water troughs (10.06 ± 0.8 mg kg-1) sites. Discussion: The higher soil TP near and around the mineral feeders can be attributed to the presence of phosphorus in the supplemental feeds. The average level of soil TP in the mineral feeders of 34.05 ± 0.44 mg kg-1 was not high enough to be of environmental concern. Losses of soil phosphorus by overland flow are becoming a big concern when the concentrations for soil phosphorus exceeded 150 mg kg-1 in the upper 20 cm of soils. With TN, the shaded sites (34.25 ± 1.7 mg kg-1) had either higher levels than the mineral feeders (7.22 ± 0.60 mg kg-1) or water trough (10.06 ± 0.80 mg kg-1) sites. Higher TEIN content at the shade sites may have been more likely due to frequent urination of animals and lack of vegetation immediately adjacent to shades. The lack of vegetation within and/or near the shades then had no uptake mechanism for removal of inorganic nitrogen, unlike the heavy demand for inorganic nitrogen by bahiagrass in other areas of the pasture. An accumulation of TEIN immediately adjacent to shades could lead to a potential point source that would be susceptible to leaching or gaseous losses to the environment. Conclusions: Early results of the study are suggesting that cattle congregation sites in beef cattle operations in Florida are not nutrient-rich, therefore may not contribute more nutrients to surface and groundwater supply under Florida conditions. Recommendations and Perspectives: Since there is no apparent vertical build up or horizontal movement of TEIN and TP in the landscape, we can then surmise that cattle congregation sites may be considered not a potential source of nutrients at the watershed level, at least on the sand ridge soils in Florida. Further research is continuing, including sampling at cattle congregation sites at other locations in north and south Florida, which started in July 2004.     

Conceptual methodologies in agro-environmental systems

When continuous measurement of relevant above- and below-ground environmental factors is made, and the dynamics of crop growth and phenology is followed, it is shown that small-plot agronomic experimentation can provide information vital to the development and testing of simulation models. Such models for crops of maize (Zea mays) and the legume cowpea (Vigna unguiculata), grown as sole crops and in an intercrop system, were used to simulate yield at two separate sites in the main savanna farming zones in Ghana, West Africa. Simulation was carried out for these three cropping systems using 20 years of historical rainfall data for the two sites, investigating the effect on yield of management options which included time of planting, rate of nitrogen fertilizer application, and crop planting density.

The yield results of this series of simulations were then subject to two different types of analysis in order to assist the evaluation of agricultural options for the nation. The first analysis was an economic evaluation based on gross margins, but using the stochastic-dominance technique to rank the profitability of the alternative cropping and management systems.

The second, more general methodology employed was multi-criteria analysis (MCA). This analysis covered economic returns and their variability, the amount and quality of residue returned to the soil, and the aerial cover provided by the crop. Other factors which could affect the sustainability of production in the long term, but which could only be evaluated qualitatively, were also included in the analysis, as allowed in MCA methodology. The MCA was then carried out for three scenarios in which different weightings were given to economic outcomes and to factors which are believed to encourage ecological sustainability. These scenarios allow recognition of different priorities which might be given by traditional subsistence farmers as compared to commercial producers.

Outcomes of this broad analysis of development alternatives provided scientific support for the traditional Ghanaian practice of grain/legume intercropping which is also widespread in the tropics. The suite of methodologies illustrated by the case study appears to be suitable for the evaluation of alternative farming systems at the scale of a small nation such as Ghana.     

Genetic diversity of a natural population of Rhizobium leguminosarum biovar trifolii analysed from field nodules and by a plant infection technique

We compared trapping of Rhizobiumleguminosarum biovar trifolii isolates under field soil and non-soil environmental conditions. Isolates were obtained from white clover (Trifoliumrepens L.) and red clover (T. pratense L.) grown directly in the field and from plants inoculated with soil from the same site using a plant infection technique. Isolates were identified by genomic polymerase chain reaction (PCR) fingerprinting using primers derived from the enterobacterial repetitive intergenic consensus (ERIC) sequences. The isolates trapped from soil dilutions in the laboratory included a number of major ERIC types that were not found in the field trapped nodules, suggesting that sampling of clover Rhizobium strains from soil dilutions may not be representative of the field nodulating population.     

Stabilities of daidzin,glycitin, genistin,and generation of derivatives during heating

The soy isoflavones daidzin, glycitin, and genistin were purified from defatted soy flour using preparative-scale reverse-phase HPLC. The stabilities of the three isoflavones at different heating temperatures were investigated. Daidzin, glycitin, and genistin were lost at a rate of 26, 27, and 27% of their original concentration, respectively, after 3 min at 185 degrees C. At 215 degrees C, decreases of daidzin, glycitin, and genistin were 65, 98, and 74% after 3 min and 91, 99, and 94% after 15 min, respectively. The order of the thermal stabilities, from lowest to highest, was glycitin, genistin, and daidzin. Acetyl daidzin and acetyl genistin, daidzein, glycitein, and genistein were produced during heating at temperatures above 135 degrees C. The rate of binding of an acetyl group to form acetyl daidzin and acetyl genistin from daidzin and genistin was higher than the rate of loss of a glucoside group to form daidzein and genistein. However, acetyl daidzin and acetyl genistin decreased sharply at temperatures above 200 degrees C, while daidzein, glycitein, and genistein were relatively stable over 30 min. The stability of daidzein was higher than that of glycitein or genistein.