Molecular typing of Salmonella enterica serovar Enteritidis isolates from food-producing animals in Japan by multilocus variable-number tandem repeat analysis: evidence of clonal dissemination and replacement

Background

Salmonella enterica serovar Enteritidis is a zoonotic pathogen. Human infections are associated with contaminated eggs and egg products. In Japan, since 1989, the incidence of food-borne disease caused by S. Enteritidis has increased and a pandemic has occurred; however, little is known about changes that occurred before and after this pandemic event in the dominant lineage of isolates from food-producing animals. This study aimed to determine the S. Enteritidis lineages in Japan over the last few decades by using multilocus variable-number tandem repeat analysis (MLVA).

Findings

MLVA was used to analyse 79 S. Enteritidis isolates collected from chickens (n = 63), cattle (n = 12), pigs (n = 2), and goats (n = 2) during 1975–2009. The S. Enteritidis isolates showed 14 different MLVA allele combinations, which were classified into two major clusters (A and C) and a minor cluster (B). All the 62 isolates in cluster A were isolated after 1988, whereas 13 of the 17 isolates belonging to cluster B and C were isolated before 1989.

Conclusions

The MLVA results showed that cluster C was predominant before 1989, and isolates in cluster A disseminated since 1989 and replaced the previous dominant clone, suggesting that isolates of cluster A originated from imported S. Enteritidis infection.     

Parental Contributions in a Japanese Flounder Hatchery Inferred from Mitochondrial DNA Haplotypes

We analyzed a portion of the mitochondrial genome of hatchery Japanese flounder Paralichthys olivaceus to compare the genetic characteristics between maternal parents and their offspring. The maternal parents consisted of 11 subcultured fish (broodstock taken from hatchery-raised fish) and 41 wild fish. A 1098 base pair region extending from the 3'half of the cytochrome b gene to the central domain of the control region of mtDNA was amplified by PCR and analyzed using 11 restriction endonucleases. We also analyzed the number of copies of tandem repeats in the control region from the sizes of the PCR products. Each female parent had a unique haplotype, but only 31 of them were observed among the 66 offspring examined. From these results, we estimated that about 60% of the maternal parents in the hatchery contributed to the offspring we surveyed. The distribution of the family sizes of the wild fish was Poisson, which is consistent with expectation from a randomly mating population. In contrast, the distribution of family sizes of the subcultured fish deviated from a Poisson distribution. One of the sources of the deviation was that none of the six oldest fishes contributed to offspring production, which is consistent with observation that the spawning peaks later in the spawning season for older fish in flounder hatcheries. Uneven contribution of the female flounders in the hatchery has the potential to reduce substantially the genetic diversity in the offspring. Our results suggest that the misuse of subcultured fish as broodstock is an important cause of reduced genetic diversity in hatchery-raised flounder juvenile.     

Transgenic Nile tilapia (Oreochromis niloticus) over-expressing growth hormone show reduced ammonia excretion

The growth of aquaculture has negatively affected the environment due to the high levels of nitrogen excreted by farmed fish. Here we propose that modifying the nitrogen metabolism of the fish themselves using transgenic technology might solve the pollution problem. Growth hormone (GH) is known to increase protein retention and absorption, and is thought to reduce ammonia excretion. Thus, we produced transgenic Nile tilapia (Oreochromis niloticus) that over-expressed the GH gene throughout their bodies. Our findings showed that the food-conversion efficiency of the transgenic fish was 35% higher than that of their non-transgenic siblings. The rearing period required for the transgenic fish to reach a body weight of 20 g was about 75% of that required for non-transgenic fish that were fed the same type and quantity of food. The total amount of ammonium-nitrogen excreted by the transgenic fish was about 69% of that excreted by the wild-type fish over their lifetime. These results suggest that our transgenic approach has the potential to reduce the amount of nitrogen pollution caused by farmed fish. This strategy is a promising option for making aquaculture more ‘eco-friendly’.