Rapid sequence modification in the highly polymorphic region (HPR) of the hemagglutinin gene of the infectious salmon anaemia virus (ISAV) suggests intra-segmental template switching recombination

The ISAV has a genome composed of eight segments of (–)ssRNA, segment 6 codes for the hemagglutinin–esterase protein, and has the most variable region of the genome, the highly polymorphic region (HPR), which is unique among orthomyxoviruses. The HPR has been associated with virulence, infectivity and pathogenicity. The full length of the HPR is called HPR0 and the strain with this HPR is avirulent, in contrast to strains with deleted HPR that are virulent to varying degrees. The molecular mechanism that gives rise to the different HPRs remains unclear. Here, we studied in vitro the evolution of reassortant recombinant ISAV (rISAV) in Atlantic salmon head kidney (ASK) cells. To this end, we rescued and cultivated a set of rISAV with different segment 6-HPR genotypes using a reverse genetics system and then sequencing HPR regions of the viruses. Our results show rapid multiple recombination events in ISAV, with sequence insertions and deletions in the HPR, indicating a dynamic process. Inserted sequences can be found in four segments of the ISAV genome (segments 1, 5, 6, and 8). The results suggest intra-segmental heterologous recombination, probably by class I and class II template switching, similar to the proposed segment 5 recombination mechanism.     

Susceptibility of Caligus rogercresseyi collected from the native fish species Eleginops maclovinus (Cuvier) to antiparasitics applied by immersion

A major challenge for Chilean salmon farming is infestation by the ectoparasite Caligus rogercresseyi. In addition, there is evidence that a loss of chemotherapeutic treatment efficacy against important fish pathogens is occurring in salmon farming, including antiparasitic efficacy. Currently, there are known techniques that allow the determination of the susceptibility profile of parasites to antiparasitic treatment. However, there is scarce information about both threshold values and categorization of antiparasitic susceptibility for C. rogercresseyi. Bioassay technique allowed the determination of both mean values and the natural variation of EC50%, which were contrasted with available susceptibility thresholds. Results allowed to determine that parasites from the native fish host, Eleginops maclovinus, are susceptible to azamethiphos, deltamethrin and cypermethrin treatments, showing a high susceptibility profile to antiparasitics.     

Decomposition processes in coastal lagoons and their implications for the assessment of ecological health

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Submicroscopy of Aggregates of Luvic Phaeozems under Different Land Uses in the Southeast of the Buenos Aires Province,Argentina

Eurasian Soil Science - Soil aggregates are key elements of soil structure that play an important role in several soil processes. One of the major factors that affect soil structure are the...     

Silica content in soil solution and its relation with phytolith weathering and silica biogeochemical cycle in Typical Argiudolls of the Pampean Plain,Argentina—a preliminary study

Purpose  

Little is known on the silica biogeochemical cycle in terrestrial environments. The aim of this work is to assess phytolith’s role on the biogeochemical cycle of Si in Typical Argiudolls under different vegetation of the Pampean Plain, Argentina.     

Isoflavone profiles of red clovers and their distribution in different parts harvested at different growing stages

The isoflavone compositions and concentrations in the leaf, flower, petiole, and stem of 13 red clover cultivars were studied using high-performance liquid chromatography coupled with a diode array and a mass spectrometric detector with negative electrospray ionization. Different cultivars showed significantly different concentrations of individual and total isoflavones. The leaf contained the highest overall concentration, followed by the stem, petiole, and flower. Biochanin A and formononetin were the predominant isoflavones in all cultivars and all parts, along with eight other minor aglycones, daidzein, genistein, glycitein, irilone, orobol, pratensein, pseudobaptigenin, and prunetin, and four minor malonylglycosides, genistein-7-glucoside-6' '-malonate, orobol-7-glucoside-6' '-malonate, formononetin-7-glucoside-6' '-malonate, and biochanin A-7-glucoside-6' '-malonate. The isoflavone compositions and concentrations were also found to be different between red clover parts harvested at the early bud stage and the late flowering stage. Sample storage and handling prior to analysis were also found to be important. Samples in this study were kept at -5 degrees C for a few days before being freeze-dried and were found to contain mainly the aglycones of isoflavones. This may actually be an advantage in that "natural" and more bioactive isoflavones can be obtained without using chemical hydrolysis. Findings in this study therefore provide important information for developing isoflavone-rich red clovers and for optimizing harvest timing and choosing the right part of the red clover plant.     

Reproductive investment of <Emphasis Type="Italic">Pinus pseudostrobus</Emphasis> along an altitudinal gradient in Western Mexico: implications of climate change

Climate varies along altitudinal gradients and species performance may be affected in response to these variations. Climate change can modify these gradients and, at the lower limit of species distributions, individuals may become stressed and their general health and reproductive performance may decrease. Study and prediction of the effects of climate change on the distribution of species along these gradients is therefore necessary. Our model study species, Pinus pseudostrobus, is a widely distributed pine in Mexico, ranging from 1600 to 3200 masl in altitude. In order to explore changes in health condition and reproductive investment along an altitudinal gradient, ten reproductive trees were selected in each of four populations (at 2300, 2400, 2700 and 2900 masl). As a proxy of individual health, we conducted a rapid visual assessment for each tree, based on crown defoliation, dead branches and foliage discoloration. This stress condition index (SCI) ranges from zero to fifteen, and lower values indicate low stress and therefore better health conditions. We also evaluated reproductive (cone weight, number/weight of seeds) and progeny (germination/seedling growth) traits. In addition, the relationships between SCI and the reproductive/progeny traits were assessed. The lowest altitude population presented poor health, with higher values of SCI (mean ± SE = 6.3 ± 0.9) that reduced up to 4.8-fold in higher-altitude populations. Cone weight also differed among altitudes, with lighter cones in the lower population (mean ± SE = 38.2 ± 4.3 g), and 1.5-fold heavier cones found in the higher populations. In general, all of the reproductive/progeny traits differed among altitudes. The population of intermediate altitude (2700 masl) presented the highest values for all traits evaluated, indicating higher performance at this altitude. Finally, a negative relationship was found between stress condition and cone weight. Based on our results and climate change models and their predictions, an increase in physiological stress can be expected in individuals of low altitude populations. Furthermore, possible increases in pests and pathogens are likely to contribute to the decline of this population. It is therefore necessary to maintain efforts of stress condition assessment and population dynamics, as well as to permanently monitor the climate along altitudinal gradients.     

Economic impact of Wheat streak mosaic virus in the Texas High Plains

Wheat streak mosaic virus, vectored by the wheat curl mite Aceria tosichella Keifer, is a major limiting factor in wheat production in the Texas Panhandle. It is the most frequently encountered virus in the region, affecting both shoot and root biomass, and consequently it can drastically reduce both forage and grain yield, and water-use efficiency of the plant. In light of the continuing decline of water levels in the Ogallala Aquifer, its effect on water-use efficiency has significant implications for irrigated fields, especially with regard to energy costs for pumping water. This article estimates the potential economic losses from the virus infection. To achieve this objective, partial budgeting techniques, based primarily on data from field experiments, were used. Results indicate that Wheat streak mosaic virus causes grain and forage yield losses that significantly affect profits from wheat production. In addition, irrigated wheat producers are more negatively affected by the disease due to the economic losses from reduced water-use efficiency of infected plants. The economic insights from this article provide important implications for wheat management and research priority-setting.