Differences in vernalisation responses in onion cultivars

Onions normally form bulbs in the first year of growth; however, exposure to low temperatures can induce flowering (vernalisation) before bulbs are produced. Based on the cultivation data of onions grown in Japan, we evaluated and validated a reported model describing the onion vernalisation response. The observed bolting rates of ‘Sapporoki’, which was used in the construction of a previous model, were a good fit to the model, whereas, the bolting rates of one of the overwinter-type cultivars, ‘Momiji No.3?, were lower than the predicted value. The difference between the predicted and observed bolting rates in ‘Momiji No.3? was caused by a larger VD_0.5, the coefficient in vernalisation response models that represents the time point when half of the plants have bolted. Overwinter-type and/or bolting resistant cultivars can have parameters that indicate a further vernalisation requirement for bolting. The parameters in our model can be customised to the cultivar being investigated, and our study suggests the viability of modelling onion bolting by using air temperature.     

Genetic analysis of residual feed intakes and other performance test traits of Japanese Black cattle from revised protocol

The performance test protocol for Japanese Black cattle was revised in April 2002. This resulted in restriction of access to concentrate (based on body weight) and modification of the concentrate's ingredients. Genetic parameters of growth and feed utilization traits of the performance test were estimated using 1304 records using the revised protocol. Residual feed intakes (RFIs) as alternative indicators for feed utilization efficiency were included. (Co)variance components were estimated by EM-REML. Heritabilities for growth traits were between 0.26 and 0.47. Heritabilities for feed intakes and conversions ranged from 0.25 to 0.37 and from 0.03 to 0.29, respectively. Genetic variances and heritabilities were lower for the revised protocol. Highly positive genetic correlations of daily gain (DG) with feed intakes indicated selection on DG is expected to increase feed intake. Selection on feed conversion may lead to higher DG. The heritability estimates for RFIs ranged from 0.10 to 0.33 and were generally higher than corresponding estimates for feed conversion ratios. RFI of TDN showed positive genetic correlations with all feed intakes. The reduction of feed intakes could be expected through selection on the RFI without changing body size. RFIs were considered to be alternative indicators to improve feed utilization efficiency under the new performance test.     

Comparison of carcass composition among Japanese Black, Holstein and their crossbred steers fattening on farm

Carcass composition among Japanese Black, Holstein and their crossbreed (F1), by Holstein mated with Japanese Black sires, was compared by using carcass components of fattening steers collected at eight carcass processing factories. The least squares means of 14 retail cuts, total weights of retail cuts, trimmed fat and bones, and six carcass traits measured at 6th?7th rib section were used for the comparison and examined the expression of heterosis. The comparison was performed at the same level of left‐side carcass weight and under 10 mm fat cover on each retail cut. Japanese Black had the heaviest total weight of retail cuts, followed by F1 and then Holstein. By contrast, non‐edible parts, trimmed fat and bones, were heavier in the order of Holstein, F1 and Japanese Black. Of the retail cuts, so called higher‐priced cuts, such as Shoulder‐Chuck‐Roll, Tender‐Loin, Rib‐Chuck‐Roll, Strip‐Loin and Sirloin‐Butt surrounding the spinal column, were heavier in Japanese Black than Holstein. Although F1 showed intermediate values for almost all traits, Tender‐Loin, Rib‐Chuck‐Roll and Strip‐Loin of F1 were similar to those of Japanese Black rather than the mid‐parent averages. It reflects that at least the average parent heterosis of 2.3–4.3% might be expressed in these higher‐priced cuts. The classification of breeds was carried out by the canonical discriminant analysis using 20 carcass measurements. By the canonical variates, breeds can be effectively discriminated with misdiscrimination rate of 11.6%. When the comparison is made at the carcass weight constant, Japanese Black has characteristics for producing superior carcass quality as well as meat quality.     

Development of novel SNP system for individual and pedigree control in a Japanese Black cattle population using whole‐genome genotyping assay

Individual identification and parentage analysis using DNA markers are essential for assuring food identity and managing livestock population. The objective of this study was to develop a single nucleotide polymorphism (SNP) panel system for individual effective identification and parentage testing in a Japanese Black cattle population using BovineSNP50 BeadChip. On the basis of SNP frequencies, 60 unlinked informative SNPs were finally selected as candidate markers. The allelic frequencies for each SNP were estimated using additional individuals by PCR‐RFLP (restriction fragment length polymorphism). A total of 87 SNP markers added in conjunction with previously developed 27 SNPs were evaluated to assess the utility of the test. The estimated identity power was 2.01 × 10^?34. Parentage exclusion probabilities, when both suspected parents' genotypes were known and when only one suspected parent was genotyped, were estimated as 0.99999997 and 0.99998010, respectively. This developed SNP panel was quite powerful and could successfully exclude false sires with a probability of >0.9999 even if the dam's genotype information was not obtained. The SNP system would contribute to management of the beef industry in Japan.     

Peripheral mononuclear cell response in Japanese black calves after oral administration of IFN-alpha

To investigate the effects of oral administration of an interferon (IFN)-alpha drug on the immune reaction of healthy Japanese Black (JB) calves, peripheral leukocyte populations and their ability to produce cytokine mRNA were analyzed after oral administration of IFN-alpha. Fourteen calves fed in one herd were divided into two groups; seven calves were orally administered 0.1 g/day of IFN-alpha from the day of birth to day 5 on each day (group 1, N=7), and the other seven calves were used as the control (group 2, N=7). Blood samples were collected from the jugular veins of all calves before administration and in weeks 1, 2, 4, 8, and 16 after birth. The number of MHC class II+CD14+ monocytes in the leukocytes population of group 1 increased gradually after birth, and significantly higher numbers were detected in week 4 compared with group 2. MHC class II-CD14+ monocytes in group 1 peaked in week 1, and a significant increase was detected compared with group 2. The level of IL-12 in the cytokine mRNA of group 1 increased gradually between weeks 1 and 2, and a significantly higher level of IL-12 was found compared with group 2. These results suggest that oral administration of IFN-alpha induces activation of the monocyte functions in JB calves.     

Further examination on the truncation point in truncation selection for proportion-defined trait

For truncation selection on a proportion‐defined trait, an approximate expression for the true truncation point is currently available, which has been derived assuming that the component traits follow a curtailed normal distribution. This note deterministically examines the validity of the approximate expression in some details. We show that the value defined by the approximate expression is equivalent to that derived from an approximation to the true probability density function for the proportion trait of concern. We also show that the validity of the approximate expression is definitely dependent on the magnitude of the lower limit in the definite integral involved in the true probability density function for the proportion trait. We reveal some properties of the lower limit concerning its maximum and minimum. We indirectly assess the adequacy of the approximate expression under the settings of the altered coefficients of variation for the component traits and the changed correlation between them. The results indicate that the true value of the truncation point can be numerically represented quite sufficiently by the approximate expression, when the coefficients of variation are approximately below 25% and the positive correlation is not extremely high.     

Estimation of dominance genetic variances for reproductive traits and growth traits of calves in Japanese Black cattle

The dominance genetic effects for reproductive and calf growth abilities in the practical Japanese Black populations were examined using average information (AI) algorithm restricted maximum likelihood (REML) under animal models. The reproductive traits were observed in Japanese Black cattle maintained at Tottori and Okinawa prefectures, and growth traits of calves were observed in cattle at Okinawa. The average of dominance relationships in Tottori ranged from 0.2 to 0.4%, while the level in Okinawa was lower and sparse compared with Tottori. The proportions of the dominance variances to sum of additive and dominance variances () were all 0.02 for reproductive traits in Tottori. In contrast, the proportion was 0.02–0.64 in Okinawa regardless of the level of dominance relationships. These proportions suggested that the dominance might affect the expression of calving interval, days open and gestation length in Okinawa, where breeding units were spread over many islands. Although the dominance variances could not estimate birthweight, w as 0.34 for calf market weight and 0.27 for average daily gain from birth to calf market in Okinawa. These values also suggested that the dominance might affect the early growth of calves. In the near future, genetic relationships will become more complicated with continuation of the current selection and mating systems. Therefore, genetic evaluation accounting for dominance effects would be necessary for particular traits and populations.     

Estimation of genetic parameters for growth and feed utilization traits in Japanese Black cattle

Performance test results of 3250 sire candidates were used to estimate the genetic parameters of growth and feed utilization traits in Japanese Black cattle. Growth traits analyzed were six body measurements at the end of the performance test and daily gain (DG) during the test. Feed utilization traits were intakes and conversions of concentrate, roughage, digestible crude protein and total digestible nutrient (TDN). Genetic (co)variance components were estimated by the restricted maximum likelihood procedure using an expectation maximization algorithm under the two‐trait animal model. Heritabilities for growth traits ranged from 0.40 to 0.70 and for feed utilization traits from 0.21 to 0.74. Genetic correlations of DG were positive with feed intake (0.15–0.77) and negative with feed conversions (?0.63 to ?0.30). These relationships indicate that the selection based on DG improves feed efficiency but it simultaneously increases feed intake. Feed conversions showed genetic correlations ranging from ?0.09 to 0.03 with total available energy consumption, TDN intake. Thus the results suggested that feed conversions were not efficient selection criteria to decrease TDN intake and to improve comprehensive feed utilization ability.