Microsatellite-based analysis of genetic diversity in 91 commercial Brassica oleracea L. cultivars belonging to six varietal groups

Brassica oleracea L. includes various types of important vegetables that show extremely diverse phenotypes. To elucidate the genetic diversity and relationships among commercial cultivars derived by different companies throughout the world, we characterized the diversity and genetic structure of 91 commercial B. oleracea cultivars belonging to six varietal groups, including cabbage, broccoli, cauliflower, kohlrabi, kale and kai-lan. We used 69 polymorphic microsatellite markers showing a total of 359 alleles with an average number of 5.20 alleles per locus. Polymorphism information content (PIC) values ranged from 0.06 to 0.73, with an average of 0.40. Among the six varietal groups, kohlrabi cultivars exhibited the highest heterozygosity level, whereas kale cultivars showed the lowest. Based on genetic similarity values, an UPGMA clustering dendrogram and a two-dimensional scale diagram (PCoA) were generated to analyze genetic diversity. The cultivars were clearly separated into six different clusters with a tendency to cluster into varietal groups. Model-based structure analysis revealed six genetic groups, in which cabbage cultivars were divided into two subgroups that were differentiated by their head shape, whereas cauliflower and kai-lan cultivars clustered together into a single group. Furthermore, we identified 18 SSR markers showing 27 unique alleles specific to only one cultivar that can be used to discriminate 22 cultivars from the others. Our phylogenetic and population structure analysis presents new insights into the genetic structure and relationships among 91 B. oleracea cultivars and provides valuable information for breeding of B. oleracea species. In addition, we demonstrate the utility of SSR markers as a powerful tool for discriminating between the cultivars. The SSR markers described herein will also be helpful for Distinctness, Uniformity and Stability (DUS) test of new cultivars.     

Selenium uptake response among selected wheat (Triticum aestivum) varieties and relationship with soil selenium fractions

Some South Dakota soils contain high levels of available selenium (Se) for crop uptake. A field study was conducted to determine if any popular wheat (Triticum aestivum) varieties demonstrate differential Se uptake. A total of 280 samples including eight winter wheat and ten spring wheat varieties were analyzed for grain Se concentration and uptake for two growing years. Soil samples were sequentially fractionated into (1) plant available (0.1?M KH₂PO₄ extractable) and (2) conditionally available (4?M HCl extractable) pools and analyzed separately for total Se. Selenium concentration in wheat grain had a wide variability and the mean value over two years was 0.63?µg?Se?g^?1. Grain Se concentration and Se uptake were not significantly different by wheat varieties tested in this study. Grain Se concentration was significantly correlated with soil Se levels, soil pH, and orthophosphate-P content within a location, but grain Se concentration was strongly influenced by geographical location in which different amounts of soil Se bioavailability occurred.     

A Laboratory Column Study on the Biodegradation of Toluene and Methyl tert–Butyl Ether: The Effect of Substrate Interactions

Soil vapor extraction (SVE) is one of the most effective remediation technologies for soil and groundwater contamination. Soil particles can be mobilized by air perturbation during SVE, resulting in the differentiation of porous media, which has not been well addressed. This paper developed a numerical method to study the flow pattern and quantify the change of porous media for the first time. Based on the mass equilibrium and Darcy’s law, a two-phase water–air flow model was constructed with integration of saturation, relative permeability, and capillary pressure during SVE. Relationship between porosity and saturation was deduced and coupled with the two-phase flow model for quantifying change of porous media in real time. Results reveal that both porosity and permeability increase sharply in the early stage of SVE then gradually to a quasi-steady state. These increases in vadose zone tapered off with distance from the SVE screen and the steady period occurred later as well. The influence radius of a single SVE well and the change degree in porosity and permeability of media were proportional to the extraction vacuum and the driving coefficient C, which is more sensitive than extraction vacuum according to the simulation results. Knowledge from this modeling exercise provides a useful tool to estimate the change of remediated zone and assess the environmental risk of remedial activities at real-world contamination sites.     

Agronomic comparison of six bermudagrasses from Southern United States with five tropical grasses in central Puerto Rico

The dry matter yield (DMY), in vitro organic matter digestibility (IVOMD) and crude protein (CP) content of eleven grasses were studied during the years 1992 to 1994 under mob grazing conditions. Offered and consumed dry forage do not differ significantly (P<0.05) among the highest yielding accessions Cynodon nlenfuensis PRPI 2341, Cynodon plectostachium PRPI 11487, and Cynodon dactylon cv. Tifton 85. However, the commercial Cynodon nlenfuensis PRPI 2341 was consistently the highest yielding accession both years. Among the other grasses, Digitaria eriantha showed the lowest levels of refused dry forage, thus presenting the best forage acceptability by grazing animals. Digitaria eriantha also showed the highest levels of IVOMD in both the short and the long day seasons. It is concluded that none of the evaluated Cynodon dactylon accessions from southern United Sates, nor the digitaria and brachiaria species adapted better than the commercial accession Cynodon nlenfuensis PRPI 2341. Warm‐season perennial grasses are grown extensively in the southeastern United States. Among the grasses, one of the most widely grown is from the species Cynodon dactylon, commonly named bermudagrass (Eichhorn, 1984). The choice of a bermudagrass cultivar for establishment of pastures is an important decision for cattlemen seeking high weight gains of stocker steers throughout the warm grazing season of the southern United States (Greene et al., 1989). Selection of improved bermudagrass hybrids has dramatically increased forage yield over that of common bermudagrass. Improved forage quality has also resulted in improved performance of grazing animals fed harvested hybrid bermudagrass forage (Gates et al., 1989). Reports on average daily weight gains (ADG) of yearling steers grazing different bermudagrass hybrids varied between 0.68 to 0.79 kg animal^‐1 day^‐1 during the summer season of southern Louisiana (Faw et al., 1986). Hill et al. (1993) in Tifton, GA, found yearling ADG of 0.67 and 0.65 kg animal^‐1 day^‐1 for the recent bermudagrass releases Tifton 85 and Tifton 78, respectively. Forage quality dry matter yield and grazing performance support the hypothesis that Tifton 85 will likely become an important hay and grazing forage for the southern United States. In Puerto Rico, Cynodon nlenfuensis PRPI 2341 (stargrass) is at present the grass cultivar most frequently grown on dairy farms (Ramos‐Santana and Randel, 1996). Yearly ADG of 0.59 kg animal^‐1 day^‐1 has been reported for young steers grazing stargrass in the humid tropical zone of Puerto Rico (Vicente‐Chandler et al., 1983). At Ona, FL, lower ADG of 0.54 kg has also been obtained with stargrass (Mislevy, 1989). The objective of this paper is to compare the agronomic performance (dry matter yield and quality) of six of the most outstanding bermudagrass hybrids from the southern United States, with five tropical grasses from the cynodon, brachiaria, and digitaria genera under the tropical conditions of central Puerto Rico.     

Long-Term Fertilization Effects on Rice Productivity and Nutrient Efficiency in Korean Paddy

ABSTRACT

Long-term fertilization tests evaluated rice (Oryza sativa) productivity in relation to application of nitrogen (N)-phosphorus (P)-potassium (K) (120-34.9-66.7 kg ha^{? 1}, respectively) during 1967–1972 and N-P-K (150-43.7-83.3 kg ha^{? 1}, respectively) during 1973–2000. The comparison treatments (NP, PK, and NK) and the control (not fertilized) were selected for calculating nutrient efficiency. Rice grain yield increased at a 17.78 kg ha^{? 1} yr^{? 1} in the control, mainly due to development of improved cultivars. Phosphorus management was found to be important for indigenous fertility and rice productivity in this paddy soil. Yield increased significantly with P fertilization. Without N fertilization (PK), rice productivity increased 56.85 kg ha^{? 1} yr^{? 1} from 62% of NPK at the initial stage to 74% after passing 34 years, which might be affected by increasing biological N fixation with P accumulation in soil. In NK treatment, rice yield increased at a relatively low rate (37.82 kg hr^{? 1} yr^{? 1}) from the same rice productivity with that of NPK in 1967 to 91% after 34 years. In comparison, yield increased at a high rate (62.82 kg hr^{? 1} yr^{? 1}) without K fertilization (NP) from ca. 90% of NPK and might exceed the yield of NPK after 64 years of long-term fertilization. Therefore, K fertilization level might be readjusted after long-term fertilizing in paddy soil.     

Induced resistance against a bacterial disease by orysastrobin,a chemical fungicide

European Journal of Plant Pathology - Certain chemical pesticides control plant diseases through induction of systemic resistance mechanisms. In this study, orysastrobin, a “quinone outside...     

Plum pox virus: diagnosis and spread inhibition by weed control

Journal of Plant Diseases and Protection - Plum pox virus (PPV) is a plant virus (genus Potyvirus, family Potyviridae) infecting stone fruit trees. Since the first report from Bulgaria in 1917, PPV...     

Rapid detection of plum pox virus by reverse transcription recombinase polymerase amplification

Journal of Plant Diseases and Protection - Plum pox virus (PPV) is one of the most destructive viral pathogens infecting stone fruit trees worldwide. As PPV causes a viral disease that requires...     

Populations of aphids on named varieties of Irish potatoes

Populations of the green peach aphid,Myzus persicae (Sulzer), and the potato aphid,Macrosiphum euphorbiae (Thomas), were observed on 27 named varieties of Irish potatoes in the Yakima Valley of Washington intermittently from 1947 through 1968. The Epicure, Great Scot, and B5141-6 varieties produced relatively fewer green peach aphids than other varieties tested; Bliss Triumph and Red Pontiac produced relatively fewer potato aphids. Except for Doebay Red, the red-skinned varieties, Bliss Triumph, Red McLure, Norland, and Earnly Rose, were extremely to moderately productive of the green peach aphid. No correlation was apparent between abundance of aphids and the specific gravity or yield of tubers.