In quest of genomic treasure

It should be emphasized that “129” is not simply a number but is also the designation of a mouse strain that has made a great contribution to modern biological science and technology. Embryonic stem cells derived from 129 mice were essential components of gene-targeting strategies in early research. More recently, 129 mice have provided superior donor genomes for cloning by nuclear transfer. Some factor or factors conferring genomic plasticity must exist in the 129 genome, but these remain unidentified.     

Occurrence and survival of coliform bacteria, Escherichia coli and Salmonella in various manure and compost

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Occurrence and survival of fecal-contamination indicator bacteria (coliform bacteria, Escherichia coli and Salmonella ) in various manure and compost samples collected from 23 composting facilities mostly in Kyushu were investigated by using selective media. Coliform bacteria were detected on desoxycholate agar from 11 (38%) of 29 product samples (15 cow dung manure, 4 poultry manure, 2 biosolid compost and 8 food waste compost) at a range of 10² to 10⁶ cfu g¹ dry matter. From positive samples, 21 isolates of possible coliform bacteria were purified. Among them, species of coliform bacteria ( E. coli , E. vulneria , Pantoea sp. and Buttiauxella agrestis ) were identified whereas isolates of Serratia marcescens , not coliform bacteria, were also obtained, suggesting that careful observation was necessary to avoid false positive counting due to the presence of a red colony of S. marcescens that resembled coliform bacteria. Isolates of E. coli were tested for slide aggregation with a set of antiserum against pathogenic E. coli serotypes and negative reaction was obtained for all the isolates tested. Direct detection of E. coli on Chromocult coliform agar and Salmonella on MLCB agar resulted in none and 2 (17%) of 12 samples tested, respectively. The fate of fecal-contamination indicator bacteria as above was followed during compost production on 7 cases at 6 compost facilities and 4 patterns were observed: fecal-contamination indicator bacteria 1) decreased and finally disappeared, 2) decreased once but re-growth was occurred on products, 3) decreased to some extent but remained in products, 4) was not detected throughout production. These results suggest that some fecal-contamination indicator bacteria may survive compost production and appropriate temperature control would be significant for hygiene control of manure and compost.     

Measurement of Indoor Sulfur Dioxide Emission from Coal–Biomass Briquettes

The coal–biomass briquette is an alternative fuel that replaces low-grade coal. It is expected that the use of coal–biomass briquettes will effectively reduce the indoor concentration of sulfur dioxide (SO₂) emitted during raw coal combustion. In this study, indoor concentrations of SO₂ emitted from combustion of either coal–biomass briquettes or low-grade coal in households in Nanchuan, which is in the rural area of Chongqing City, China, were measured. The acidic gases were collected using passive samplers, and the samplers were taken to the laboratory for extraction and measurement. The SO₂ concentrations resulting from the use of coal–biomass briquettes were clearly reduced compared with those resulting from the use of low-grade coal. The concentrations of SO₂ to which the inhabitants (housewives) of the houses were exposed were also measured, and were found to be less with coal–biomass briquettes. Although with coal–biomass briquettes exposure concentrations still exceeded the World Health Organization guideline for SO₂ (125 μ g m^?3), indoor air pollution and adverse effects on human health caused by SO₂ could be decreased by substituting coal–biomass briquettes for low-grade coal as a domestic fuel.     

RNAi-mediated Knockdown of Xist Does Not Rescue the Impaired Development of Female Cloned Mouse Embryos

In mice, one of the major epigenetic errors associated with somatic cell nuclear transfer (SCNT) is ectopic expression of Xist during the preimplantation period in both sexes. We found that this aberrant Xist expression could be impeded by deletion of Xist from the putative active X chromosome in donor cells. In male clones, it was also found that prior injection of Xist-specific siRNA could significantly improve the postimplantation development of cloned embryos as a result of a significant repression of Xist at the morula stage. In this study, we examined whether the same knockdown strategy could work as well in female SCNT-derived embryos. Embryos were reconstructed with cumulus cell nuclei and injected with Xist-specific siRNA at 6–7 h after oocyte activation. RNA FISH analysis revealed that siRNA treatment successfully repressed Xist RNA at the morula stage, as shown by the significant decrease in the number of cloud-type Xist signals in the blastomere nuclei. However, blastomeres with different sizes (from “pinpoint” to “cloud”) and numbers of Xist RNA signals remained within single embryos. After implantation, the dysregulated Xist expression was normalized autonomously, as in male clones, to a state of monoallelic expression in both embryonic and extraembryonic tissues. However, at term there was no significant improvement in the survival of the siRNA-injected cloned embryos. Thus, siRNA injection was largely effective in repressing the Xist overexpression in female cloned embryos but failed to rescue them, probably because of an inability to mimic consistent monoallelic Xist expression in these embryos. This could only be achieved in female embryos by applying a gene knockout strategy rather than an siRNA approach.     

Changes of fumonisin production in rice grain during ensiling

We assessed fumonisin production during the ensiling of rice grain. Rice grain was harvested at the full‐ripe stage and prepared as rough rice, crushed rough rice, brown rice or crushed brown rice. Each material was ensiled under six conditions: (1) no fungus, anaerobic; (2) no fungus, aerobic; (3) water added, anaerobic; (4) water and fumonisin‐producing fungus added, anaerobic; (5) water and fumonisin‐producing fungus added, aerobic; or (6) fumonisin‐producing fungus added to autoclaved material, aerobic. After 40 days of ensilage, we analyzed the silage fermentative quality and fumonisin concentration. The fermentative quality of all materials was good in treatments (3) and (4) (pH < 4), reasonable in treatment (5) (pH = 5～6) and unacceptable in treatments (1) and (2) (pH > 6.5). The fumonisin concentration was low in all materials in treatments (1) to (4), slightly increased in the three materials other than rough rice in treatment (5), and enormously increased in all materials in treatment (6). The results indicate that the fumonisin‐producing fungus does not produce fumonisin in anaerobic conditions. It is important that an anaerobic condition be maintained during ensiling in order to reduce the fumonisin content in rice grain silage.     

秸秆还田方式对春播期土壤温度的影响

在黑龙江旱作耕地土壤和眷播期气候条件下,对秸秆深施还田和覆盖还田耕地以及对照地的土壤温度进行了测试和分析.结果表明,秸秆深施还田耕地土壤日平均温度(9.1℃)高于覆盖还田耕地和对照地的土壤温度(8.3和7.9℃).秸秆深施还田与秸秆覆盖还田和对照地的土壤温度具有显著差异(P<0.05);并且随着秸秆深施还田量的增加,对...     

Inactivation of Escherichia coli in soil by solarization

Contamination of agricultural soil by fecal pathogenic bacteria poses a potential risk of infection to humans. For the biosafety control of field soil, soil solarization in an upland field was examined to determine the efficiency of solarization on the inactivation of Escherichia coli inoculated into soil as a model microorganism for human pathogenic bacteria. Soil solarization, carried out by sprinkling water and covering the soil surface with thin plastic sheets, greatly increased the soil temperature. The daily average temperature of the solarized soil was 4–10°C higher than that of the non-solarized soil and fluctuated between 31 and 38°C. The daily highest temperature reached more than 40°C for 8 days in total in the solarized soil during the second and third weeks of the experiment. Escherichia coli in the solarized soil became undetectable (< 0.08 c.f.u. g⁻¹ dry soil) within 4 weeks as a result, whereas E. coli survived for more than 6 weeks in the non-solarized soil. Soil solarization, however, had little influence on the total direct count and total viable count of bacteria in the soil. These results indicate that soil solarization would be useful for the biosafety control of soil contaminated by human pathogens via immature compost or animal feces.     

Effect of dietary kapok oil supplementation on growth performance,carcass traits,meat quality and sensory traits of pork in finishing‐pigs

Kapok seed and oil from the tropical zone are widely used as pig feed to harden porcine fat in Japan. This study evaluated the effect of dietary kapok oil supplementation on pork quality and sensory traits. Five Duroc pigs each were assigned to an experimental group supplemented with kapok oil and a control group. Dietary kapok oil supplementation had no effect on growth performance and intramuscular fat content in the Longissimus dorsi muscle (LM). Supplemental kapok oil increased saturated fatty acid contents in subcutaneous and intramuscular fat and decreased monounsaturated fatty acid levels (P < 0.05). Off‐flavor detection by a trained panel was higher in the experimental than the control group (P < 0.05), but tenderness, juiciness, texture and flavor intensity of LM chops were similar in both groups. The overall palatability of pork as judged by a consumer panel decreased with kapok oil supplementation (P < 0.01). These results indicate that while growth performance, intramuscular fat contents and carcass characteristics were unchanged, while dietary kapok oil supplementation makes firm fat to prevent inferior soft fat in pork, it can lower the palatability of pork due to a decrease in monounsaturated fatty acids.     

Bioremoval of Surfactant from Laundry Wastewater in Optimized Condition by Anoxic Reactors

Effects of ethanol and nitrate on linear alkyl benzene sulfonate (LAS) degradation were investigated using central composite design. At experimental design, removal of 99.9% was observed in batch reactors (1 L) with 9.8 to 41.2 mg L^?1 of LAS. The batch reactors were kept under agitation at 120 rpm and 30 °C. Ethanol (co-substrate) and nitrate (electron acceptor) were statistically significant factors (p?<?0.05) in surfactant removal. Optimal values were 97.5 and 88 mg L^?1 for ethanol and nitrate, respectively. LAS removal was kinetically investigated by varying surfactant concentration while using optimal values. Batch I (27 mg L^?1 LAS) exhibited greater degradation rate (K^LAS) (0.054 h^?1) in the presence of ethanol and nitrate. Nonetheless, in Batch II (60 mg L^?1 LAS), the K^LAS values decreased in those reactors probably due to inhibition by excess substrate for same concentrations of nitrate and ethanol added in reactors. As LAS concentration increased, the dominance of bacterial populations also increased, whereas diversity index decreased from 2.8 (inoculum) to 2.4 and 2.5 for reactors with both added nitrate and ethanol and those with only added ethanol, respectively. Probably, a selection of microbial populations occurred in relation to LAS concentration. The nitrate and ethanol, at able concentration, made it possible the induction of denitrifying microrganisms foward to LAS removal.     

Responses of community structure,diversity, and abundance of understory plants and insect assemblages to thinning in plantations

Identifying effective management operations for plantations is important for conservation of biodiversity in a plantation-dominated landscape. We tested whether pre-commercial thinning influenced community structures and could be an effective strategy for increasing diversity and abundance of plants and animals in plantations. We designated thinned and unthinned study stands in Japanese cedar (Cryptomeria japonica) plantations and compared the communities of understory vegetation, bees, butterflies, hoverflies, and longhorn beetles 1 and 3 years after thinning. The analyses of vegetation showed that pre-commercial thinning affected community structure, but species richness and vegetation abundance were not significantly affected. Thinning affected insect community structure, and both species richness and abundance of all insect groups increased 1 year after thinning. However, 3 years after thinning, significant differences only remained in the species richness of bees and the abundance of bees, butterflies, and hoverflies. These results suggest that pre-commercial thinning in plantation stands influences the community structure of understory vegetation and can be an effective way to increase the diversity and abundance of some insect groups in the short term. However, the results also suggest that the duration of the operational effects of pre-commercial thinning varies among insect groups; thus, the variable effects of pre-commercial thinning should be carefully considered in the conservation-based management of plantation stands.