Molecular characterization of Newcastle disease viruses isolated from rural chicken in northwest Ethiopia reveals the circulation of three distinct genotypes in the country

Newcastle disease (ND) is a highly contagious disease that affects many species of birds and causes significant economic losses to the poultry industry worldwide. Fifteen Newcastle disease virus (NDV) isolates obtained from rural chickens in northwest Ethiopia in 2011 and 2012 were characterized genotypically. The main functional region of the F gene was amplified and sequenced (260 nucleotides). Among the Ethiopian NDV isolates, 2 isolates had the virulent motif ¹¹²R-R-Q-K-R-F¹¹⁷ at the cleavage site of the fusion protein while 13 isolates contained the lentogenic motif ¹¹²G-G/R-Q-G-R-L¹¹⁷. Phylogenetic analysis based on the variable region of the F gene indicated that the two isolates exhibiting the virulent motif belonged to lineage 5 (genotype VII) subgenotype d and the remaining 13 isolates were grouped into lineage 2 (genotype II). The nucleotide sequences of lineage 5 isolates were genetically related to the Sudanese NDV isolates, suggesting potential epidemiological link of ND outbreaks between neighbouring countries. The lentogenic strains shared similarities with La Sota vaccine strain and probably originated from the vaccine strain either through direct exposure of birds to the live vaccine or to infectious La Sota-like strains circulating in rural poultry. This study provides genetic evidence on the existence of different NDV genotypes circulating in the rural poultry in Ethiopia. The virulent NDV continues to be a problem in poultry sector in Ethiopia, and their continuous circulation in rural and commercial poultry calls for improved surveillance and intensified vaccination and other control measures.     

Occurrence and present status of coastal dolphins (Delphinus delphis and Tursiops truncatus) in the eastern Ionian Sea

• 1. Boat surveys aimed at studying short‐beaked common dolphins and common bottlenose dolphins in eastern Ionian Sea coastal waters were conducted between 1993 and 2003. During 835 survey days, 24 771 km of total effort was distributed within an area of 480 km², resulting in 428 common dolphin and 235 bottlenose dolphin sightings.
• 2. Individual photo‐identification was performed extensively throughout this study, making it possible to monitor the number of animals seen in the study area each year and their long‐term residency patterns.
• 3. Common dolphins declined across the study period, from 2.18 encounters/100 km in 1997 to 0.40 encounters/100 km in 2003. In contrast, there was a relatively stable presence of bottlenose dolphins, some individuals showing high levels of site fidelity and others using the area only occasionally.
• 4. The local decline of common dolphins and the low density of bottlenose dolphins appeared to reflect the general status of these cetacean species in the wider Mediterranean region, where common dolphins were classified as endangered in the IUCN Red List in 2003.
• 5. Based on the available evidence, we infer that the present unfavourable status of common dolphins in eastern Ionian Sea coastal waters is largely a consequence of prey depletion.

Copyright © 2005 John Wiley & Sons, Ltd.     

Effect of crude oil extracts from trout offal as a replacement for fish oil in the diets of the Australian native fish Murray cod Maccullochella peelii peelii

The efficacy of trout oil (TO), extracted from trout offal from the aquaculture industry, was evaluated in juvenile Murray cod Maccullochella peelii peelii (25.4±0.81 g) diets in an experiment conducted over 60 days at 23.7±0.8 °C. Five isonitrogenous (48% protein), isolipidic (16%) and isoenergetic (21.8 kJ g^?1) diets, in which the fish oil fraction was replaced in increments of 25% (0–100%), were used. The best growth and feed efficiency was observed in fish fed diets containing 50–75% TO. The relationship of specific growth rate (SGR), food conversion ratio (FCR) and protein efficiency ratio (PER) to the amount of TO in the diets was described in each case by second‐order polynomial equations (P<0.05), which were: SGR=–0.44TO²+0.52TO+1.23 (r²=0.90, P<0.05); FCR=0.53TO²–0.64TO+1.21 (r²=0.95, P<0.05); and PER=–0.73TO²+0.90TO+1.54 (r²=0.90, P<0.05). Significant differences in carcass and muscle proximate compositions were noted among the different dietary treatments. Less lipid was found in muscle than in carcass. The fatty acids found in highest amounts in Murray cod, irrespective of the dietary treatment, were palmitic acid (16:0), oleic acid (18:1n‐9), linoleic acid (18:2n‐6) and eicosapentaenoic acid (20:5n‐3). The fatty acid composition of the muscle reflected that of the diets. Both the n‐6 fatty acid content and the n‐3 to n‐6 ratio were significantly (P<0.05) related to growth parameters, the relationships being as follows. Percentage of n‐6 in diet (X) to SGR and FCR: SGR=–0.12X²+3.96X–32.51 (r²=0.96) and FCR=0.13X²–4.47X+39.39 (r²=0.98); and n‐3:n‐6 ratio (Z) to SGR, FCR, PER: SGR=–2.02Z²+5.01Z–1.74 (r²=0.88), FCR=2.31Z²–5.70Z+4.54 (r²=0.93) and PER=–3.12Z²–7.56Z+2.80 (r²=0.88) respectively. It is evident from this study that TO could be used effectively in Murray cod diets, and that an n‐3:n‐6 ratio of 1.2 results in the best growth performance in Murray cod.     

Bottlenose dolphins (Tursiops truncatus) in the north-western Adriatic Sea: Spatial distribution and effects of trawling

1. Many species and populations of odontocetes have modified their behaviour to take advantage of feeding opportunities provided by fishing activities, with depredation of fishing gear being the most common type of adaptation.
2. The northern Adriatic Sea has been identified as an important marine mammal area because of a regular occurrence of common bottlenose dolphins. Boat surveys were conducted within a 3,000 km² sector of the Adriatic Sea off the coast of Veneto, Italy, between April and October 2018–2019. Based on 76 days at sea, 10,711 km of navigation, and 81 h 26 min of dolphin tracking, this study contributes novel quantitative information on dolphin spatial distribution, and on their occurrence in the wake of beam trawlers, otter trawlers, and midwater pair trawlers.
3. A combined generalized additive model and generalized estimation equation framework indicated that trawling—along with other physiographic, biological and anthropogenic variables—influenced dolphin distribution. In days of trawling, the chance of encountering dolphins increased by ~4.5 times (95% confidence interval 1.8–11.0) near active beam trawlers, by ~16.0 times (7.1–36.0) near otter trawlers, and by ~28.9 times (12.0–69.6) near midwater pair trawlers.
4. Spatial modelling was used to create maps of predicted distribution, suggesting differences in habitat use between trawling and no-trawling days. Spatial modelling for all days identified a dolphin distribution hotspot of 832 km², situated off the Po river delta.
5. Evidence contributed by this study can be used to inform management action within one of the world's areas most heavily impacted by fishing and other human encroachment. Such management action would help enforce the European Union's Habitats Directive and Marine Strategy Framework Directive, while also informing EU's Maritime Spatial Planning.

     

Effects of the extensive culture system as finishing production strategy on biometric and chemical parameters in rainbow trout

The effect of finishing extensive farming period, to reduce fat content and manipulate the fatty acid profile of fish muscle, was evaluated in rainbow trout. Fish were stocked in an artificial lake, in which fish were fed only on naturally available nutrients with no supply of artificial feed, for different lengths of time from 0 to 120 days. No weight loss was noted during the whole finishing period while total length increased from 228±7 to 269±3 mm and the condition factor decreased from 1.41±0.04 to 0.89±0.02. The total fat content of the fillets decreased considerably from 4.7±0.6% at the beginning to 2.4±0.4% and 0.7±0.2% after 45 and 120 days respectively. Fillet fatty acid composition was affected by the time of stocking in the extensive farm. In contrast to the reduction in C18:1n‐9, C18:2n‐6, total monounsaturated fatty acid and total n‐6 percent values, an increase in the C20:5n‐3, C22:6n‐3, total polyunsaturated fatty acid and total n‐3 percent values was observed. It was shown that while other finishing strategies for salmonids have some disadvantages, the extensive culture system seems to be a potentially useful tool for increasing the general quality of the end product.     

β-cyclodextrin and caffeine complexes with natural polyphenols from olive and olive oils: NMR, thermodynamic, and molecular modeling studies

Complexes of β-cyclodextrin (β-CD) and caffeine (Caf) with biophenols present in olive and olive oil (tyrosol, hydroxytyrosol, homovanillic acid, 3,4-dihydroxyphenylacetic acid, and protocatechuic acid) were investigated by NMR spectroscopy and thermodynamical-molecular dynamic studies to verify the formation of supermolecular aggregates. The obtained results indicated that the investigated biophenols form inclusion complexes with β-CD in a molar ratio of 1:1 in aqueous solution having binding constant values from 10- to 40-fold bigger than those of the corresponding complexes with Caf. Then, β-CD preferentially encloses the biophenol molecule, decreasing its bitter taste and, at the same time, preserving it against chemical and physical decomposition reactions that occur during storage.     

A Street Canyon Model Intercomparison in Florence, Italy

Assessing air quality in street canyons is a crucial concern, as the highest pollution levels and threshold exceedances are usually experienced within this kind of urban streets. A brief overview based on experimental studies and modelling techniques undertaken in literature is presented, including characteristic features affecting wind flow and pollutant dispersion within street canyons. In this work, a numerical street canyon model intercomparison has been performed in a typical urban canyon in Florence, Italy. In particular, STREET, Canyon Plume Box Model (CPBM) and Operational Street Pollution Model (OSPM) have been applied to compute the street-level 1-h carbon monoxide (CO) concentrations. In addition, the CALINE4 model has been applied to test the site morphology. Input data cover a 1-year time period and include meteorological observations as well as measured traffic volumes and driving speeds. Hourly road emissions have been calculated using the COPERT methodology taking into account vehicle fleet, traffic flows and driving speed, as well as ambient temperature to account for cold overemissions. A preliminary experimental data analysis has been carried out in order to investigate the dependence of observed CO concentrations on meteorological and traffic parameters. Hourly CO concentrations observed over the full year have been used to compare the STREET, CPB and OSP models, resulting in a detailed statistical analysis carried out by wind sector as well as on a seasonal basis.     

Determination of growth-stage-specific crop coefficients (Kc) of cotton and wheat

Development of crop coefficient (Kc), the ratio of crop evapotranspiration (ETc) to reference evapotranspiration (ETo), can enhance ETc estimates in relation to specific crop phenological development. This research was conducted to determine growth-stage-specific Kc and crop water use for cotton (Gossypium hirsutum) and wheat (Triticum aestivum) at the Texas AgriLife Research field at Uvalde, TX, USA from 2005 to 2008. Weighing lysimeters were used to measure crop water use and local weather data were used to determine the reference evapotranspiration (ETo). Seven lysimeters, weighing about 14 Mg, consisted of undisturbed 1.5 m × 2.0 m × 2.2 m deep soil monoliths. Six lysimeters were located in the center of a 1-ha field beneath a linear-move sprinkler system equipped with low energy precision application (LEPA) and a seventh lysimeter was established to measure reference grass ETo. Crop water requirements, Kc determination, and comparison to existing FAO Kc values were determined over a 2-year period on cotton and a 3-year period on wheat. Seasonal total amounts of crop water use ranged from 689 to 830 mm for cotton and from 483 to 505 mm for wheat. The Kc values determined over the growing seasons varied from 0.2 to 1.5 for cotton and 0.1 to 1.7 for wheat. Some of the values corresponded and some did not correspond to those from FAO-56 and from the Texas High Plains and elsewhere in other states. We assume that the development of regionally based and growth-stage-specific Kc helps in irrigation management and provides precise water applications for this region.     

First data on the coastal dynamics and the sedimentary characteristics of the area influenced by the River Irminio basin (SE Sicily)

The various lithological outcrops in the drainage basin of the River Irminio are described for their contribution to the riverborne material and therefore to the sedimentary balance of the coastal strip. The main contribution to the present sedimentary balance of the subaqueous delta cannot be attributed to the River Irminio, owing to the extreme difference between fluvial and marine sediments. The river's hydraulic characteristics have not always been constant but have tended to decrease in three stages: the first, with a strong competence, shown by the Quaternary alluvial sediments with pebbles; the second, up to 1985, of medium competence, shown by sandy-gravelly deposits in the coastal strip and by finer sediments in the distal areas; the third, at the present day, with low competence, shown by a prevalently suspended load sediment with practically no fluvial influence and with a sedimentation dominated by the littoral currents; this is because between the 1960s and 1970s, owing to interventions along the river channel, the sediments from the basin were reduced to the point of non-existence and a new sedimentary cycle was set up on the delta with allochthonous sediments, exclusively made up of quartz clasts, whereas in the distal zones the mineralogical and compositional characteristics of the ancient river mouth were maintained.