Test characteristics from latent-class models of the California Mastitis Test

We evaluated (using latent-class models) the ability of the California Mastitis Test (CMT) to identify cows with intramammary infections on the day of dry-off. The positive and negative predictive values of this test to identify cows requiring dry-cow antibiotics (i.e. infected) was also assessed. We used 752 Holstein-Friesian cows from 11 herds for this investigation. Milk samples were collected for bacteriology, and the CMT was performed cow-side, prior to milking on the day of dry-off. At the cow-level, the sensitivity and specificity of the CMT (using the four quarter results interpreted in parallel) for identifying all pathogens were estimated at 70 and 48%, respectively. If only major pathogens were considered the sensitivity of the CMT increased to 86%. The negative predictive value of the CMT was >95% for herds with major-pathogen intramammary-infection prevalence <15%, so that selective dry-cow therapy might be reasonable for such herds if cows were screened with the CMT.     

Griffithsin and Carrageenan Combination Results in Antiviral Synergy against SARS-CoV-1 and 2 in a Pseudoviral Model

Over 182 million confirmed cases of COVID-19 and more than 4 million deaths have been reported to date around the world. It is essential to identify broad-spectrum antiviral agents that may prevent or treat infections by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) but also by other coronaviruses that may jump the species barrier in the future. We evaluated the antiviral selectivity of griffithsin and sulfated and non-sulfated polysaccharides against SARS-CoV-1 and SARS-CoV-2 using a cytotoxicity assay and a cell-based pseudoviral model. The half-maximal cytotoxic concentration (CC₅₀) and half-maximal effective concentration (EC₅₀) were determined for each compound, using a dose-response-inhibition analysis on GraphPad Prism v9.0.2 software (San Diego, CA, USA). The therapeutic index (TI = CC₅₀/EC₅₀) was calculated for each compound. The potential synergistic, additive, or antagonistic effect of different compound combinations was determined by CalcuSyn v1 software (Biosoft, Cambridge, UK), which estimated the combination index (CI) values. Iota and lambda carrageenan showed the most potent antiviral activity (EC₅₀ between 3.2 and 7.5 µg/mL). Carrageenan and griffithsin combinations exhibited synergistic activity (EC₅₀ between 0.2 and 3.8 µg/mL; combination index <1), including against recent SARS-CoV-2 mutations. The griffithsin and carrageenan combination is a promising candidate to prevent or treat infections by SARS-CoV-1 and SARS-CoV-2.     

Enrichment planting as a silvicultural option in the eastern Amazon: Case study of Fazenda Cauaxi

Liana-dominated forest patches constitute 15–20% of old-growth forests in the Eastern Amazon but are generally excluded from management for timber production. Here we ask if liana-dominated patches may be brought into production by clearing lianas and conducting enrichment planting (EP) of native timber species. We present growth results from 8 years of such EP trials. Rapid growth and low mortality of all species in this study suggest that EP in cleared liana patches can contribute to timber stocks in second and third harvests of managed forests. The most vigorous individuals of Parkiagigantocarpa and Schizolobium amazonicum in each enrichment site grew more than 1 cm diameter per year (rates were initially >2 cm yr⁻¹), and attained dominant canopy positions and diameters equal to those of small canopy trees in the surrounding forest within 8 years of planting (mean dbh ∼18 cm and ∼20 cm, respectively, at year 8). Limited data on Ceiba pentandra plantings indicate a similar trajectory for this species (dbh ∼40 cm in 8 years). The most vigorous Swietenia macrophylla grew at least 1 cm per year in enrichment plots (mean dbh ∼10 cm in 8 years), but take longer to attain dominant positions. Tabebuia serratifolia may take much longer to reach the canopy than other species tested (rates <1 m yr⁻¹). We attribute the excellent performance to light availability; planting in intact soil with minimal compaction and abundant organic material; and low competition rates maintained by periodic thinning of competing vegetation.     

Direct production losses and treatment costs from bovine viral diarrhoea virus,bovine leukosis virus,Mycobacterium avium subspecies paratuberculosis,and Neospora caninum

Our purpose was to determine direct production losses (milk loss, premature voluntary culling and reduced slaughter value, mortaliy loss, and abortion and reproductive loss) and treatmetn costs (veterinary services, medication cost, and extra farm labour cost) due to four infectious diseases in the maritime provinces of Canada: bovine viral diarrhoea (BVD), enzootic bovine leukosis (EBL), Johne's Disease (JD), and neosporosis. We used a partial-budget model, and incorporated risk and sensitivity analyses to identify the effects of uncertainty on costs. Total annual costs for an average, infected, 50 cow herd were: JD$ 2472; BVD$ 2421; neosporosis $ 2304; EBL$ 806. The stochastic nature of the proportion of infected herds and prevalence of infection within a herd were used to estimate probability distributions for these ex post costs. For all diseases, these distributions were right skewed. A sensitivity analysis showed the largest effect on costs was due to milk yield effects. For example, changing milk production loss from 0 to 5% for BVD increased the costs for the disease by 266%.     

Neospora then and now: prevalence of Neospora caninum in Maritime Canada in 1979, 1989, and 1998

The seroprevalence of Neospora caninum was compared among New Brunswick, Nova Scotia, and Prince Edward Island in 1998, 1989, and 1979. In 1998, the seroprevalence was lowest in Prince Edward Island, where it was the same as in 1989. Neospora caninum was present in 1979, but at a lower prevalence.     

The use of negative binomial modelling in a longitudinal study of gastrointestinal parasite burdens in Canadian dairy cows

The epidemiology of bovine gastrointestinal nematodes was investigated through a 1-year (October 1999 to September 2000) longitudinal study in 38 Canadian dairy herds from 4 different provinces (Prince Edward Island, Quebec, Ontario, Saskatchewan). For each herd, fecal egg counts from 8 randomly selected animals were performed on a monthly or quarterly basis. Larval cultures were performed once, to determine the species breakdown of the parasites. All producers were interviewed regarding herd management practices. The observed fecal egg counts were low in this study, with a range from 0 to 419 nematode eggs per 5 g of feces. The mean count was 9.8 and the median was 1. Standard transformations failed to normalize the data, which followed an over-dispersed Poisson distribution. A zero inflated negative binomial model was applied to assess factors that would influence the fecal egg counts. Identified associations were: egg counts were lowest in the winter and highest in the late spring; first-lactation cattle had higher counts than older cows; if manure was spread mechanically on pastures used by lactating cattle the egg counts were higher; and if manure was spread on heifer-pastures, the adult cows had lower counts. In herds where pasture use was more extensive, the cattle had higher fecal egg counts. The difference in pasture exposure was found to be a main contributor to an observed difference in fecal egg counts among herds in the 4 provinces.