Wetland rice soils as sources and sinks of methane: a review and prospects for research

 Rice paddies are an important human-made ecosystem for the global CH₄ budget. CH₄, which is produced in the predominantly anaerobic bulk soil layers, is oxidized significantly before it reaches the atmosphere. Roots of rice, in addition to supporting the consumption of CH₄, contribute to the total CH₄ production in the soil. The various controls of CH₄ emission from this ecosystem depend on the structure of plant and microbial communities and their interactions. Availability of organic substrates, electron acceptors and other soil- and plant-related factors influence the activities of microbial communities. Agronomic practices including fertilization and application of pesticides have effects on CH₄ emission. Recent studies using molecular retrieval approaches with small subunit rRNA-encoding gene (rDNA) sequences and functional genes, showed the richness of diversity of the microbial community in rice paddy soils, which includes members of the Archaea and methanotrophs. There is need for further research to know the consequences, at the ecosystem level, of changes in microbial diversity and microbial communities in paddy soils. This will aid in understanding the mechanisms involved in the mitigating effects of certain agricultural practices. Received: 13 July 1999     

Thermoelectricity in molecular junctions

By trapping molecules between two gold electrodes with a temperature difference across them, the junction Seebeck coefficients of 1,4-benzenedithiol (BDT), 4,4'-dibenzenedithiol, and 4,4'-tribenzenedithiol in contact with gold were measured at room temperature to be +8.7 +/- 2.1 microvolts per kelvin (muV/K), +12.9 +/- 2.2 muV/K, and +14.2 +/- 3.2 muV/K, respectively (where the error is the full width half maximum of the statistical distributions). The positive sign unambiguously indicates p-type (hole) conduction in these heterojunctions, whereas the Au Fermi level position for Au-BDT-Au junctions was identified to be 1.2 eV above the highest occupied molecular orbital level of BDT. The ability to study thermoelectricity in molecular junctions provides the opportunity to address these fundamental unanswered questions about their electronic structure and to begin exploring molecular thermoelectric energy conversion.     

Effect of post‐methanation effluent on soil physical properties under a soybean‐wheat system in a Vertisol

Post‐methanation effluent (PME) generated through bio‐methanation of distillery effluent, a foul‐smelling, dark colored by‐product of distillery industries, is applied to arable land in some areas near the vicinity of the distillery industries as an amendment. The PME contains considerable amount of organic matter and salt besides its high plant‐nutrient content. The present investigation was conducted for three years during 1999–2002 on soybean‐wheat cropping sequence to evaluate the effect of graded levels of post‐methanation effluent (PME) on soil physical properties and crop productivity in a deep Vertisol of central India. Six application doses of PME viz. S_2.5+W₀: 2.5 cm PME applied to soybean and wheat on residual nutrition, S_2.5+W_1.25: 2.5 cm PME to soybean and 1.25 cm to wheat, S_5.0+W₀: 5 cm PME to soybean and wheat on residual nutrition, S_5.0+W_2.5: 5.0 cm PME to soybean and 2.5 cm to wheat, S_10.0+W₀: 10 cm PME to soybean and wheat on residual nutrition, and S_10.0+W_5.0: 10.0 cm PME to soybean and 5.0 cm to wheat, were compared with 100% recommended NPK+FYM ? 4 Mg ha^–1 and control (no fertilizer, manure or PME). The application of PME increased the organic carbon content and electrical conductivity of the soil compared to control and 100% NPK+FYM treatment. The organic C content was maximum in S_10.0+W_5.0 (11.2 g kg^–1) and minimum in control (5.2 g kg^–1). Electrical conductivity increased from 0.47 dS m^–1 in control to 1.58 dS m^–1 in highest dose of PME (S_10.0+W_5.0). The PME treatments have not affected the soil pH. The application of PME showed a significant improvement in the physical properties of the soil. The mean weight diameter (MWD), percent water‐stable aggregation (% WSA), saturated hydraulic conductivity (K_sat), and water retention (WR) at 0.033 MPa suction were significantly (P < 0.05) more while bulk density (BD) and penetration resistance was significantly less in PME‐treated plots than that of control. The MWD showed a linear and positive relationship (r = 0.89**) with the soil organic C. Soybean recorded significantly higher seed yield at all PME treatments than control. Highest average soybean yield (2.39 Mg ha^–1) was recorded in S_10.0+W₀ but yield decreased significantly in S_10.0+W_5.0 (2.08 Mg ha^–1). In wheat, all the PME‐treated plots except S_2.5+W₀ yielded significantly higher than control while the 100% NPK+FYM treatment yielded (3.46 Mg ha^–1) at par with the S_10.0+W_5.0 (4.0 Mg ha^–1) and S_5.0+W_2.5 (3.66 Mg ha^–1). Fresh application of PME to wheat resulted in significant improvement in grain yield over that grown on residual fertility. Thus, application of PME to arable land, as an amendment, could be considered as a viable option for the safe disposal of this industrial waste.     

Helminthosporium leaf blight resistance and agronomic performance of wheat genotypes across warm regions of South Asia

Helminthosporium leaf blight (HLB) is the most important disease constraint to wheat (Triticum aestivum L.) cultivation in the eastern Gangetic Plains of South Asia. A Helminthosporium Monitoring Nursery (HMN) including potential adapted and exotic sources of HLB resistance was developed in Bangladesh, India and Nepal to assess the stability of genetic resistance across locations. The 8th, 9th and 10th HMN assessed the HLB resistance and agronomic traits of 17 wheat genotypes across 20 environments of Bangladesh, India and Nepal in the 1999‐2000, 2000‐2001 and 2001‐2002 cropping seasons, respectively. The area under the disease progress curve (AUDPC) for HLB, grain yield, thousand‐kernel weight (TKW), days to heading, days to maturity, and plant height were examined. The 17 genotypes showed a range of variability for disease and agronomic characters. Disease severity (AUDPC) differed in the 3 years and showed the highest values in 2002. The increase in AUDPC in 2002 caused the lowest grain yield, with an average 18% reduction due to HLB. A few genotypes (SW 89‐5422, Yangmai‐6 and Ning 8201) appeared to have stable HLB resistance across environments. However, most of the higher‐yielding genotypes, except BL 1883, were unstable. The results suggest that careful selection of HLB resistance with acceptable grain yield, TKW and plant height may be possible using the wheat genotypes included in the HMN.     

Mixed feeding schedules in semi‐intensive pond culture of Nile tilapia,Oreochromis niloticus,L.: is it necessary to have two diets of differing protein contents?

Two semi‐intensive grow‐out trials of Nile tilapia, Oreochromis niloticus (L.), each consisting of seven mixed feeding schedules (rhythmic presentation of high and low protein) and two constant, a high‐protein and the other low‐protein feeding schedules, were carried out simultaneously for 60 days. Mixed feeding schedules were achieved, in Trial 1, by alternating the presentation of a high feed ration (H; 2.3% body weight (BW)) with a low feed ration (L; 1.5% BW) of a single diet A (crude protein content 33%), and in Trial 2, by alternating the presentation of diet A with diet B of a relatively low protein content (crude protein content 22%). In both trials, significant improvements in protein utilization parameters, such as apparent protein conversion efficiency and protein efficiency ratio against continuously high protein feeding were obtained because of the adoption of mixed feeding schedules without any significant decline in the growth parameters such as net fish yield or daily weight gain. In both trials, the mixed feeding schedule ensuring 2 days of high followed by 3 days of low protein presentation, viz. 2H/3L of Trial 1 and 2A/3B of Trial 2 performed the best. Improvement in nutrient utilization in both trials was comparable; however, at existing market prices cost saving because of adoption of mixed feeding schedules was greater in Trial 1.     

In vitro assay of plant protease inhibitors from four different sources on digestive proteases of rohu, Labeo rohita (Hamilton), fingerlings

The in vitro inhibitory effect of protease inhibitors from four seed extracts (soybean, grasspea, black gram and horse gram) on digestive proteases of rohu was assessed by enzyme inhibition assay and substrate sodium dodecyl sulphate‐polyacrylamide gel electrophoresis. High proteolytic activity was detected in the intestinal extract of rohu (Labeo rohita) fingerlings at two different pH ranges (8–8.5 and 10–11). That protein digestion occurs mainly in the alkaline condition in this fish without a stomach is evident from very high trypsin activity (0.95±0.04 benzoyl‐dl ‐arginine‐p‐nitroanilide U mg protein⁻¹) in the intestine. In case of grass pea seed, more than 50% inhibition of alkaline protease activity was recorded when the ratio of inhibitor to enzyme was 9.41 μg U⁻¹. More than 40% inhibition of protease activity was recorded in case of horse gram seed when the ratio of inhibitor to enzyme was 5.51 μg U⁻¹. Black gram at 11.0 μg U⁻¹ and soybean seed proteins at 62.75 μg U⁻¹ resulted in 50% and more than 30% inhibition of digestive protease activity in rohu fingerlings respectively. A plot of the inhibition values obtained by changing the relative concentrations of enzyme/inhibitor resulted in different dose–response curves for different protein sources. The use of substrate gel electrophoresis allowed the visualization of the aforementioned differences in inhibition. Each seed extract produced a characteristic profile of protease inhibition. It is concluded that protease inhibitors present in plant protein sources adversely affect the digestive proteases in fish and hence there is a need to eliminate/reduce the amount of such inhibitors through proper processing before incorporation into aquafeeds.     

Effect of diluting Marek's disease vaccines on the outcomes of Marek's disease virus infection when challenged with highly virulent Marek's disease viruses

Dilution of Marek's disease (MD) vaccines is a common practice in the field to reduce the cost associated with vaccination. In this study we have evaluated the effect of diluting MD vaccines on the protection against MD, vaccine and challenge MD virus (MDV) kinetics, and body weight when challenged with strains Md5 (very virulent MDV) and 648A (very virulent plus MDV) by contact at day of age. The following four vaccination protocols were evaluated in meat-type chickens: turkey herpesvirus (HVT) at manufacturer-recommended full dose; HVT diluted 1:10; HVT + SB-1 at the manufacturer-recommended full dose; and HVT + SB-1 diluted 1:10 for HVT and 1:5 for SB-1. Vaccine was administered at hatch subcutaneously. One-day-old chickens were placed in floor pens and housed together with ten 15-day-old chickens that had been previously inoculated with 500 PFU of either Md5 or 648A MDV strains. Chickens were individually identified with wing bands, and for each chicken samples of feather pulp and blood were collected at 1, 3, and 8 wk posthatch. Body weights were recorded at 8 wk for every chicken. Viral DNA load of wild-type MDV, SB-1, and HVT were evaluated by real time-PCR. Our results showed that dilution of MD vaccines can lead to reduced MD protection, reduced relative body weights, reduced vaccine DNA during the first 3 wk, and increased MDV DNA load. The detrimental effect of vaccine dilution was more evident in females than in males and was more evident when the challenge virus was 648A. However, lower relative body weights and higher MDV DNA load could be detected in chickens challenged with strain Md5, even in the absence of obvious differences in protection.     

Glutamate wastewater as a culture medium for <Emphasis Type="Italic">Azospirillum rugosum</Emphasis> production and its impact on plant growth

Monosodium glutamate wastewater (MSGW) was used as a culture medium for Azospirillum rugosum strain IMMIB AFH-6 inoculant (In) by optimizing the dilution at 2.5% and pH 7.0 ± 0.1. A. rugosum growth studies were carried out in shake flasks and subsequently tested for plant growth promotion by seed germination bioassay and greenhouse pot experiments. The highest colony-forming units (cfu) 8.58 and 8.87 log cfu mL⁻¹, respectively, at 48 h of growth were recorded in MSGW and MSGW with yeast extract 0.04%. Seed bioassay results revealed that A. rugosum grown on MSGW stimulated the root and shoot elongation of maize (Zea mays L.) and pai tsai (Brassica chinensis L.). Pai tsai recorded significantly higher dry matter production when treated with A. rugosum and chemical fertilizers than control. The MSGW is a suitable culture medium for A. rugosum growth, and it is comparable to commercial media when tested for agricultural production.     

Heavy metals and arbuscular mycorrhizal (AM) fungi can alter the yield and chemical composition of volatile oil of sweet basil (<Emphasis Type="Italic">Ocimum basilicum</Emphasis> L.)

The effects of increasing levels of metals (10 and 20 mg of Cr kg^-1 and 25 and 50 mg of Cd, Pb, and Ni kg^-1 soil) and arbuscular mycorrhizal (AM) fungi Glomus intraradices on the yield, chemical composition of volatile oil, and metal accumulation in sweet basil (Ocimum basilicum L.) were investigated in a pot experiment. The shoot yield, content of essential oil, and root yield of sweet basil were increased by the application of low dose of Cd, Pb, and Ni as compared to control. The application of high level of metals had deleterious effect on the yield. In soil with low dose of metal applied, AM fungi inoculation significantly enhanced the metal concentration in shoots and had adverse effect on the yield, whereas in soil with high dose of metal applied, AM fungal inoculation reduced the metal concentration in shoot and had beneficial effect on the yield. The content of linalool in basil oil was decreased and that of methyl chavicol was increased by the application of Cr, Cd, and Pb in soil as compared to control. Similarly, the level of linalool and methyl chavicol was decreased and that of methyl eugenol was increased by the application of Ni as compared to control. However, AM fungal inoculation led to maintain the content of linalool, methyl chavicol, and methyl eugenol in volatile oil, which were either increased or decreased by the application of metals. We conclude that the AM–sweet basil symbiosis could be used as a novel approach to enhance the yield and maintain the quality of volatile oil of sweet basil under metal-contaminated soils.     

Influence of strain, dose of virus, and age at inoculation on subgroup J avian leukosis virus persistence, antibody response, and oncogenicity in commercial meat-type chickens

The effects of viral strain, viral dose, and age of bird at inoculation on subgroup J avian leukosis virus (ALV J) persistence, neutralizing antibody (VNAb) response, and tumors were studied in commercial meat-type chickens. Chickens were inoculated on the fifth day of embryonation (5 ED) or on day of hatch (DOH) with either 100 or 10,000 50% tissue-culture infective dose (TCID50) of one of three ALV J strains, namely ADOL Hcl, ADOL 6803, or ADOL 4817. At 1, 3, 7, 11, 15, 19, 23, 27, and 32 wk posthatch, chickens were examined for ALV J viremia and VNAb against the inoculated strain of ALV J. A high incidence (83%-100%) of ALV J persistence was observed in all treatment groups. Development of VNAb did not always lead to viremia-free status; even though 18% of the chickens developed VNAb, only 4% were able to clear viremia. The viral strain, dose, and age of bird at inoculation seemed to have an effect on the incidence of VNAb; however, the differences were statistically significant in only some treatment groups. Chickens infected with ADOL 6803 had higher incidence of VNAb than chickens infected with ADOL Hc1 and ADOL 4817 (P < 0.05 in groups 5 ED at 100 TCID50 and DOH at 10,000 TCID50). There was a trend in all groups inoculated with 100 TCID50 to have higher incidence of VNAb than that of groups inoculated with 10,000 TCID50 (ADOL 6803 at 5 ED and ADOL 4817 at DOH [P < 0.05]; ADOL Hc1 at DOH [P < 0.08]). In most treatment groups (ADOL Hc1 at 100 and 10,000 TCID50, ADOL 6803 at 10,000 TCID50, and ADOL 4817 at 100 TCID50), chickens inoculated at DOH had higher incidence of VNAb than that of chickens inoculated at 5 ED (ADOL 6803 at 10,000 TCID50 [P < 0.05], ADOL Hc1 at 100 TCID50 [P < 0.08]). Incidence of ALV J-induced tumors and tumor spectrum were influenced by viral strain, age at inoculation, and VNAb response.