Global identification of human transcribed sequences with genome tiling arrays

Elucidating the transcribed regions of the genome constitutes a fundamental aspect of human biology, yet this remains an outstanding problem. To comprehensively identify coding sequences, we constructed a series of high-density oligonucleotide tiling arrays representing sense and antisense strands of the entire nonrepetitive sequence of the human genome. Transcribed sequences were located across the genome via hybridization to complementary DNA samples, reverse-transcribed from polyadenylated RNA obtained from human liver tissue. In addition to identifying many known and predicted genes, we found 10,595 transcribed sequences not detected by other methods. A large fraction of these are located in intergenic regions distal from previously annotated genes and exhibit significant homology to other mammalian proteins.     

Modelling of root ABA synthesis, stomatal conductance, transpiration and potato production under water saving irrigation regimes

Application of water saving irrigation strategies in agriculture has become increasingly important. Both modelling and experimental work are needed to gain more insights into the biological and physical mechanisms in the soil-plant system, which regulates water flow in the system and plays a central role in reducing crop transpiration. This paper presented a mechanistic model (Daisy) developed based on data obtained in the SAFIR project on measured leaf gas exchange and soil water dynamics in irrigated potato crops grown in a semi-field environment subjected to different irrigation regimes. Experimental data was compared to simulated results from the new enhanced Daisy model which include modelling 2D soil water flow, abscisic acid (ABA) signalling and its effect on stomatal conductance and hence on transpiration and assimilation, and finally crop yield. The results demonstrated that the enhanced Daisy model is capable of simulating the mechanisms underlying the water saving effects of the partial root-zone drying (PRD) irrigation as compared with the conventional full irrigation (FI). However the simulated effect on both crop yield and water use in this particular experiment was negligible indicating more experimental studies are necessary in order to improve on the model.