Global analysis of Coffea canephora Pierre ex Froehner (Rubiaceae) from the Guineo-Congolese region reveals impacts from climatic refuges and migration effects

As the second species used for commercial coffee, evaluation of Coffea canephora Pierre ex Froehner population genetics is a challenging task for coffee breeding. This study examined the pattern of genetic variability and genetic relationships of cultivated and wild populations of C. canephora sampled across the Guineo-Congolese region of Africa and some improved populations maintained in field genebanks. A total of 293 individuals, sampled from 17 populations, were genotyped with 39 nuclear microsatellite markers. Genetic diversity and structure were investigated with both a model-based and a graphical approach; isolation by distance was also tested. Relationships between the diversity clusters are discussed with regard to differentiation due to several glacial refuges during the Last Glacial Maximum (LGM). High genetic diversity within C. canephora is confirmed with a mean number of alleles of 11.85 per marker, a mean gene diversity of 0.72 and a mean observed heterozygosity of 0.36. An overall structure of two main groups (Guinean and Congolese) subdivided in six subgroups (2 for the Guinean and 4 for the Congolese) was found, including one described for the first time in the Guinean group. A fine structure within the Guinean group was also newly detected. Genetic structure of C. canephora appears to be consistent with its geographic repartition at the continent scale. Structure of diversity was found in accordance with localizations of refuge zones during LGM and migration from this period. Results from this genetic structure study raise our capabilities to better manage and use the collections of genetics resources for breeding purposes. Those results will be used in future association studies to optimize the number of genotypes to be phenotyped.     

Evaluation of sugar beet pulp efficiency for improving the retention of copper in stormwater basin

Purpose

Sugar beet pulp (SBP) has been shown to be a promising low-cost sorbent for the removal of metals from contaminated waters. The objective of this study was to investigate the impact of SBP addition to horizontal-flow gravel filters in increasing the copper (Cu) retention ability of stormwater basins.

Material and methods

Small-scale gravel filters filled with 6 kg of a sand–sediment mix (SS) were used to experimentally treat Cu-contaminated water under conditions that represented an intense storm event. Sugar beet pulp efficiency was assessed by adding 100 g of raw SBP. Two ways of applying SBP were tested: (1) mixed with SS into the gravel filter or (2) packed at the outlet in a PVC column. Eluates were characterized by their volume, pH, Cu and dissolved organic carbon (DOC) concentrations.

Results and discussion

When placed at the outlet, SBP fixed 73 % of the Cu remaining in solution and increased the overall retention capacity of the gravel filter to 99.4 %. Conversely, when SBP was mixed with SS, the outflowing water carried higher concentrations of Cu and DOC. Complementary batch experiments underlined the crucial role of DOC in the decline of Cu sorption ability observed when SS and SBP were mixed. Geochemical calculations suggested that DOC (assumed to be pectins) promotes the mobilisation of Cu from SS by complexing it in porewater.

Conclusions

Accompanied with careful guidance, SBP has the potential of removing dissolved Cu from contaminated water in gravel filters. Protocols for SBP preparation and conditions of use should be established so as to promote its sorption efficiency and decrease its release of Cu-complexing compounds like pectins.     

Zn, Cu, Cd and Hg binding to metallothioneins in harbour porpoises Phocoena phocoena from the southern North Sea

Background  

Harbour porpoises Phocoena phocoena from the southern North Sea are known to display high levels of Zn and Hg in their tissues linked to their nutritional status (emaciation). The question arises regarding a potential role of metallothioneins (MTs) with regard to these high metal levels. In the present study, metallothionein detection and associated Zn, Cd, Cu and Hg concentrations were investigated in the liver and kidney of 14 harbour porpoises collected along the Belgian coast.     

Heterosis and combining ability for yield and resistance to grain mold in tannin-free photoperiod-insensitive sorghum [Sorghum bicolor (L) Moench] in Senegal

Journal of Crop Science and Biotechnology - Increasing sorghum production per unit area in the farmer’s field by developing high yielding tannin-free and grain mold tolerant varieties in...     

Effects of companion crops and tillage on soil phosphorus in a Brazilian oxisol: a chemical and 31P NMR spectroscopy study

Journal of Soils and Sediments - Phosphorus (P) is often the main limiting factor for plant growth in highly weathered tropical soils. Phosphate use efficiency and crop yields could be increased in...     

Root reinforcement in plantations of Cryptomeria japonica D. Don: effect of tree age and stand structure on slope stability

The role of vegetation in preventing shallow soil mass movement is now fairly well understood, particularly at the individual plant level. However, how soil is reinforced on a larger scale and the influence of changes in vegetation over time has rarely been investigated. Therefore we carried out a study on the temporal and spatial changes within stands of Cryptomeria japonica D. Don, growing in the Sichuan province of China, an area where shallow landslides are frequent.     

A new bioclimatic model calibrated with vegetation for Mediterranean forest areas

? Water availability is one of the main factors explaining flora composition and growth in Mediterranean regions, where it may decline with climate change.

? Our goal was to develop a model for forest site assessment in Mediterranean environments, focusing on water availability to assess potential vegetation composition and productivity in any places, whatever their level of disturbance.

? We designed a statistical model, using global climatic and geographic variables, as well as detailed local topographic and edaphic variables, to compute a bioclimatic index for Mediterranean forest environments. This model was calibrated in France with a flora index from 325 old forests. The model explained 80.3% of the flora index variance. The method fills a gap in existing models, bridging scales from the region to forest sites.

? Beyond its theoretical aspect, it was designed to allow practical tools to be derived from it for decision-making and management, such as the assessment of climate change impact on vegetation, and of forest productivity. Its development and adaptation is possible in other Mediterranean regions, and in any region where water is one of the main limiting factors.

     

Effects of river infrastructures on the floodplain sedimentary environment in the Rhône River

Journal of Soils and Sediments - River infrastructures such as dikes, groynes, and dams are ubiquitous on most large rivers, and although their consequences on the riverbed morphology have often...     

In Winter Wheat (Triticum Aestivum L.), No-Till Improves Photosynthetic Nitrogen and Water-Use Efficiency

Journal of Crop Science and Biotechnology - To evaluate the combined effect of different agricultural practices on photosynthetic nitrogen and water-use efficiency, winter wheat was grown in the...     

Comparison of three enzyme-linked immunosorbent assays for serologic diagnosis of contagious agalactia in sheep.

Serologic diagnosis of ovine contagious agalactia (Mycoplasma agalactiae) with the enzyme-linked immunosorbent assay (ELISA) developed by Agence Fran?aise de Sécurité Sanitaire des Aliments (AFSSA) may produce a few false-positive (FP) and false-negative (FN) results. When the prevalence of disease is low, these erroneous results may generate problems for eradication schemes. To prevent this, 2 commercial ELISAs were compared with the AFSSA ELISA. Flocks of known status were selected and classified into 4 categories: true positive (TP), FP, true negative (TN), and FN; 20 sheep per flock were submitted for blood sampling. A flock was considered positive when at least 1 out of 20 sera was positive or 2 sera were doubtful. In the flock, the diagnostic sensitivity of the 3 kits was very good (100%), and the diagnostic specificity showed an improvement from 46% (AFSSA test) to 88% and 92% (commercial tests). Considering individual animals, very few positive ewes were detected within TN or FP flocks; the proportion of positive ewes varied greatly from one kit to another (48% to 82%) within TP flocks. The kinetics of antibody response in sheep experimentally infected with various field strains of M. agalactiae were quite similar with all 3 ELISAs. The agreement between the 3 tests, assessed using the kappa value, varied from moderate to good (respective values of 0.56, 0.61, and 0.86). The 2 commercial ELISAs showed better performances, probably because of a superior analytical sensitivity, and are a good alternative for the serodiagnosis of contagious agalactia in sheep.