Application of RAPD markers in the characterisation of Chrysanthemum varieties and the assessment of somaclonal variation

Characterisation of fifteen commercial varieties of Chrysanthemum was carried out through RAPD analysis. Varieties could be distinguished from each other and the level of similarity between varieties seemed to be not very high. In vitro cultures were establish from four varieties and were subjected to different proliferation conditions. Five individuals from each variety and treatment were analysed using RAPD at the beginning of the treatment and after a month of culture. Variation was detected at both stages of the culture period. The rate of variation found showed differences between varieties, but no significant difference was found between culture conditions. This revised version was published online in August 2006 with corrections to the Cover Date.     

Biplot analysis of trait relations of white lupin in Spain

A 2-year study of autumn-sown white lupin (Lupinus albus L.) was conducted under rainfed Mediterranean conditions in southern Spain. 108 landraces were evaluated for yield and major phonological and plant structural characteristics. Path coefficient and Genotype-Trait (GT) biplot analysis were used. Applying both types of analyses to the multiple trait data revealed that GT biplot graphically displayed the interrelationships among traits and facilitated visual comparison of accessions and selection. Wide variation was observed for trait phenology (dates of flowering and maturity), plant structure (plant and first order inflorescence height) and yield characters (first order branches, first order inflorescence and total yield). It was found that the accessions with the highest yields were the tallest and the latest to flower, both on the mainstem and on the lowest first order branch, and also were the latest to mature. GT biplots also had suggested as the accessions have been displayed according to their origins. The results showed that foreign germplasm may be an important material for improving some yield components such as number of pods and seeds per plant of locally adapted lupins in Spain. This revised version was published online in July 2006 with corrections to the Cover Date.     

The relationship of propagule pressure to invasion potential in plants

Summary The invasive potential of a species can be assessed by propagule pressure, which measures the chances for propagules of a species to find a suitable habitat for establishment and reproduction. Seeds, fruits, and vegetative structures that contribute to the propagule pressure are morphologically, physiologically and genetically different from one another, thus each kind should have a specific way of contributing to a successful invasion. In this paper we review plant traits that contribute to the propagule pressure. Seed production provides an estimate of the potential multiplication rate of the weed. However, it is gap-sensing mechanisms of seeds based on dormancy termination and germination requirements, which significantly contribute to the naturalization and invasion processes assuring a successful seedling establishment in environments of high competition. Dispersal of propagules reduces competition, mating with a sibling, and subsequent inbreeding depression, and increases colonization opportunities and range of expansion. Some of those benefits can be achieved in a population by existence of dormancy mechanisms and thus, the existence of a seed bank. Finally, vegetative propagation may ensure expansion of local populations when seedling establishment is low. Broadening the scope of traits that are considered in the breeding programs aimed at commercial production of plant propagules, to include those related to propagule pressure, is essential for adequate evaluation of invasive potential.     

Amplified fragment length polymorphism as a tool for molecular characterization of almond germplasm: genetic diversity among cultivated genotypes and related wild species of almond,and its relationships with agronomic traits

Amplified fragment length polymorphism (AFLP) analysis is a rapid and efficient method for producing DNA fingerprints and molecular characterization. Our objectives were to: estimate genetic similarities (GS), marker indices, and polymorphic information contents (PICs) for AFLP markers in almond cultivars; assess the genetic diversity of almond cultivars and wild species, using GS estimated from AFLP fingerprints and molecular characterization; and facilitate the use of markers in inter-specific introgression and cultivar improvement. The genetic diversity of 45 almond cultivars from Iran, Europe, and America, were studied assaying 19 primer combinations. In addition, several agronomic traits were evaluated, including flowering and maturity times, self-incompatibility, and kernel and fruit properties. Out of the 813 polymerase chain reaction fragments that were scored, 781 (96.23%) were polymorphic. GS ranged from 0.5 to 0.96, marker indices ranged from 51.37 to 78.79, and PICs ranged from 0.56 to 0.86. Results allowed the unique molecular identification of all assayed genotypes. However, the correlation between genetic similarity clustering as based on AFLP and clustering for agronomic traits was low. Cluster analysis based on AFLP data clearly differentiated the genotypes and wild species according to their origin and pedigree, whereas, cluster analysis based on agronomic data differentiated according the pomological characterization. Our results showed the great genetic diversity of the almond cultivars and their interest for almond breeding.     

Inheritance and relationships of important agronomic traits in almond

The inheritance of 16 important agronomic traits and its relationship were studied for four years in a population of 167 almond [P. dulcis (Mill.) D.A. Webb] seedlings obtained from a cross between the French selection ‘R1000’ (‘Tardy Nonpareil’ × ‘Tuono’) and the Spanish cultivar ‘Desmayo Largueta’. For some traits (blooming and leafing date) descendants segregated between the value of both progenitors, meanwhile for others the mean of the offspring was lower (bloom density, productivity and ripening date) or higher (in-shell/kernel ratio and double kernels). As expected, kernel bitterness and self-incompatibility behaved as monogenic traits. Some important correlations between traits were detected. The implications of the transmission and the correlation of these traits in the breeding programmes are discussed.     

An extended interspecific gene pool available to peach and almond breeding as characterized using simple sequence repeat (SSR) markers

Genetic diversity, as revealed by eighteenSimple Sequence Repeat (SSR) markers inthirty almond [P. dulcis (Mill.) D.A.Webb], twenty fresh-market peach [Prunus persica (L.), Basch], fifteenprocessing clingstone peach cultivars, andten rootstocks, established the geneticrelatedness among cultivars andcharacterized the variation within andbetween species. One accession each of thewild Prunus species, P.davidiana [(Carriere) Franch] and P.webbii [(Spach.) Vieh.], was included inthe analysis. The number of presumedalleles revealed by the SSR analysis rangedfrom one to six in peach whereas almondcultivars showed a range of three to nine.Peach cultivars clustered into ten groups,which are in general agreement withdocumented origin. Most processingclingstone peach cultivars clusteredseparately from fresh-market freestonecultivars supporting a distinct origin. Twomajor clusters were observed in almond withone containing California cultivars and theother containing European cultivars and theimportant California cultivar Mission.Results establish the value of SSR markersfor distinguishing different geneticlineages and characterize an extensive andlargely unexploited inter-species gene poolavailable to peach and almond breedingprograms.     

Transformation of organoarsenical species by the microflora of freshwater crayfish

A study of the transformation of arsenic species by the microflora of the freshwater crayfish Procambarus clarkii was carried out. The study of the degradation of AB (arsenobetaine) was performed in aerobic conditions in two culture media (tryptic soy broth and saline medium) at two temperatures (30 and 8 degrees C). The microflora transformed AB into TMAO (trimethylarsine oxide), DMA (dimethylarsinate), MA (methylarsonate), and an unidentified compound (U1). The quickest transformations were carried out by microflora from hepatopancreas incubated in saline medium at 30 degrees C. The individualized study of other arsenic species [AC (arsenocholine), TETRA (tetramethylarsonium ion), TMAO, DMA, and MA] was also performed in saline medium. The only transformation observed was of AC into AB. The bacteria possibly responsible for AB degradation were isolated, identified by phenotypic and genotypic methods, and individually assayed for AB transformation. Only isolates allocated to the species Pseudomonas putida were able to metabolize AB.     

Acute toxicity of zinc and arsenic to the warmwater aquatic oligochaete <Emphasis Type="Italic">Branchiura sowerbyi</Emphasis> as compared to its coldwater counterpart <Emphasis Type="Italic">Tubifex tubifex</Emphasis> (Annelida,Clitellata)

Purpose

This study aimed at evaluating the acute effects of arsenic and zinc to the warmwater aquatic oligochaete Branchiura sowerbyi. Relative sensitivity with the coldwater species Tubifex tubifex was compared. Implications for the use of B. sowerbyi in the risk assessment of sediments in the tropics are discussed.

Materials and methods

Water-only (96 h) and sediment (14 days) toxicity tests were conducted with both species evaluating a concentration series of arsenic and zinc. The tests were conducted considering the environmental conditions in the natural habitat of T. tubifex (predominantly temperate) and B. sowerbyi (predominantly tropical). Both lethal and sublethal endpoints (autotomy of the posterior body parts, abnormal behavior and appearance) were determined in the tests. The lethal (LC₁₀ and LC₅₀) and effect (EC₁₀ and EC₅₀) concentrations were also determined to assess metal sensitivity for both species.

Results and discussion

Both test species were more sensitive to Zn than As in water-only tests, which is in agreement with previous studies evaluating the toxicity of these metals to aquatic oligochaetes. Sublethal effects were generally noted at concentrations lower than those leading to mortality. The warmwater oligochaete B. sowerbyi was more sensitive to both metals tested than the coldwater species T. tubifex.

Conclusions

Study findings support the need for using indigenous tropical species in risk assessments in the tropics. In addition, sublethal effect parameters should be included in toxicity testing with aquatic oligochaetes.

     

Effect of calcium on the oxidation of linoleic acid by potato (Solanum tuberosum var. Desiree) tuber 5-lipoxygenase

When the effect of calcium on the oxidation of linoleic acid by potato tuber 5-lipoxygenase (LOX) was investigated, it was seen to promote the enzyme's activity at pH values higher than the optimum pH of 6.3, resulting in an enzyme activation at alkaline pH. Kinetic analysis of calcium activation at different pH values revealed that the cation abolished the inhibition by high substrate concentration, which occurs in the absence of Ca(2+), thus leading to activation at high substrate concentration. Studies were conducted to investigate the influence of Ca(2+) on the physicochemical nature of the substrate and its effect on the LOX activity expression. It was concluded that the aggregation mode rather than the aggregation state of linoleic acid is responsible for potato 5-LOX changes.     

Weed management and irrigation are key treatments in emerging black truffle (Tuber melanosporum) cultivation

Interest in conversion of marginal agricultural lands to small oak woodlands for the production of black truffles (Tuber melanosporum Vittad.) is increasing in the native black truffle areas of France, Spain and Italy as well as suitable or amended sites throughout the world due to high economic returns for gastronomically valuable truffles. Successful long-term management of a perennial plantation replacing an annual crop requires understanding the system in all phases of the life cycle, and in the case of truffles this involves understanding the interactive growth of the aboveground host and the belowground symbiotic ectomycorrhizal fungus whose fruitbody is the desired truffle. Here we focus on the pre-production phase, 4 years after establishing the truffle-oak plantation and prior to truffle production. We tested the influence of weed control, irrigation and fertilizer, each at 3 levels, on plant growth and ectomycorrhizal proliferation in three truffle-oaks plantations in northeast Spain. Results show that adequate weed control improves root and shoot dry weight while fertilizer and irrigation treatments did not influence plant growth. The low dose of irrigation (50% of the estimated water deficit for the site) and glyphosate weed control both increased total root tips/plant and T. melanosporum colonized tips (ectomycorrhizae) by approximately two-fold, compared to control treatments. Distribution of the ectomycorrhizae within the soil profile was significantly influenced by the low dose irrigation treatment, with increases observed in the 10?C20 cm and the 20?C30 cm deep layers compared to the control and high irrigation treatments. Four years after planting, T. melanosporum remained the dominant fungal symbiont, despite the presence of 14 other ectomycorrhizal morphotypes from these sites.