Composition and antifungal activity of the essential oil of Seseli annuum wild-growing in Serbia

The essential oil from the aerial parts of Seseli annuum, wild-growing in Serbia, was obtained by hydrodistillation and analyzed using GC and GC/MS. A total of 43 components were identified representing 96.5% of S. annuum oil. The most abundant compounds were germacrene D (29.8%), sabinene (10.3%), beta-ocimene Z (9.8%) and limonene (8.6%). The essential oil showed antifungal activity against fifteen fungi with MICs between 12.5 to 50 microl/ml.     

Effects of rice bran protein concentrate on the growth performance and digestive enzyme activities of jundiá (Rhamdia quelen) (Quoy and Gaimard, 1824)

The aim of this study was to assess the effect of increasing inclusion levels (100, 150, 200 and 300 g/kg) of rice bran protein concentrate (RBPC) in jundiá (Rhamdia quelen) diets using growth, body composition, somatic indices and digestive enzyme activity as parameters. Five isoproteic (370.08 ± 0.04 g/kg) and isocaloric (13.38 ± 0.04 MJ/kg) diets were formulated with four replicates per treatment. After acclimation, 500 jundiá juveniles (initial mean weight of 6.28 ± 0.12 g) were distributed into 20 round polyethylene tanks (280 L) (25 fish per tank) coupled to a thermoregulated water recirculating system. The fish were fed experimental diets three times daily (at 9:00, 13:00 and 17:00 hr) to apparent satiation. At the end of the trial (45 days), no significant differences were found in the body chemical composition, somatic indices, and trypsin and chymotrypsin enzymes of the fish fed experimental diets. A lower final weight and a lower condition factor were found in fish fed diets RBPC10 (100 g/kg of RBPC) and RBPC15 (150 g/kg of RBPC). Based on the results of this study, it is clear that the use of RBPC (at high dietary inclusion levels of 200 and 300 g kg^?1) is an effective alternative protein source to fishmeal.     

Seroprevalence of hepatitis E virus in dogs in Switzerland

Hepatitis E virus (HEV) is the causative agent of an acute and in most cases self‐limiting hepatitis. Of the four major HEV genotypes that infect humans, genotype 3 and 4 are zoonotic and have been identified in humans but predominantly in pigs and wild boar, which are considered the main reservoirs. However, the known host range of zoonotic HEV may be increasing to comprise additional species, including companion animals. Several studies have identified contact with dogs as a risk factor for HEV infection in humans, yet information on the occurrence of HEV in Swiss dogs is lacking. To examine a possible risk of exposure, this study was designed to assess the seroprevalence of HEV in 84 Swiss dogs. Serum and plasma samples collected from four veterinary clinics were screened for HEV‐specific antibodies by HEV‐antibody ELISA test kit. In addition, information of 22 dogs regarding the country of origin, the type of dog feed and any history of hunting was recorded. Samples from seropositive animals were also screened for the presence of HEV RNA by quantitative real‐time RT‐PCR (qRT‐PCR). Overall, 38% (32 of 84) of the dogs tested seropositive for anti‐HEV, indicating exposure to HEV. Among the 22 dogs for which information was available, HEV‐specific antibodies were detected in three of five dogs that were born abroad, in one of two dogs that were fed a raw meat‐based diet, and in one hunting dog. No viral RNA could be detected in any of the serum and plasma samples; thus, the genotype of the strains remained undetermined. This study provides further evidence for canine exposure and susceptibility to HEV and highlights the need to further assess the risks of HEV transmission to humans with contact to dogs.     

Genetic variability of Austropotamobius italicus in the Marches region: implications for conservation

• 1. Ten populations of Austropotamobius italicus from the Marches region (Central Italy), two populations from the Appennines of Calabria and Basilicata (Southern Italy) and four populations from Friuli Venezia Giulia region were sampled to elucidate the geographical pattern of genetic variability in relation to recent and historical factors.
• 2. A total of nine COI haplotypes belonging to three separate lineages have been characterized. Both lineage A (Northern Marches region) and C (Friuli Venezia Giulia region) were represented by one haplotype and were related to the Istria 1 peninsula and SouthAlps/Western Balkans lineages respectively. The lineage B included seven haplotypes belonging to the Appenines lineage.
• 3. Two hypotheses on the origin of individuals belonging to the Istrian lineage in Marches are discussed: (i) a natural colonization from the Istria peninsula refugia by migrating westwards across the bridge between the Istria peninsula and Italy, (ii) an anthropogenic origin. Based on 16S rRNA sequences, the taxonomic status of lineage B and C, defined from COI mtDNA markers, belongs to A. i. meridionalis and that of lineage A belongs to A. i. carsicus. The existence of a complex geographic structure between Marches populations (Φst=0.66) of A. i. meridionalis should be further considered in conservation management. Copyright © 2010 John Wiley & Sons, Ltd.

     

Antibiotic resistance in potentially bacteriocinogenic probiotic bacteria in aquaculture environments

Bacteriocin‐producing bacteria in aquaculture may prevent spreading of potentially pathogenic microorganisms, and could be used as an alternative to the empirical use of antimicrobial drugs, especially for prophylaxis. Bacteriocinogenic bacteria inoculated as probiotics should not carry undesirable traits, such as antibiotic resistance. This study aimed to find potentially bacteriocinogenic bacteria in an aquaculture system and evaluate their antimicrobial susceptibility patterns. Selective cultures for enterobacteria, non‐fermenting Gram‐negative rods and Gram‐positive cocci were obtained from water samples before bacterial isolation and biochemical identification. Overall, 160 representative strains were recovered and for 57 antagonism was observed against selected strains such as Staphylococcus aureus, with antagonism being expressed better on Brain Heart Infusion medium. After exclusion of interfering factors, bacteriocin or bacteriocin‐like substances were suggested to be related to the antagonism observed. Higher drug‐resistant rates were observed among potentially bacteriocinogenic bacteria for different antimicrobials of clinical relevance. Although antibiotic resistance is a global health problem and bacteriocins are attractive alternatives to classical antibiotic even to multiresistant bacteria, the data obtained suggest that bacteriocin‐producing bacteria may harbour resistance genes available for transference in different environments. From the ecological and biotechnological perspective, antimicrobial susceptibility tests must be always performed when prospecting potentially bacteriocinogenic bacteria as probiotic candidates in the environment.     

Deep-Sea Anemones Are Prospective Source of New Antimicrobial and Cytotoxic Compounds

The peculiarities of the survival and adaptation of deep-sea organisms raise interest in the study of their metabolites as promising drugs. In this work, the hemolytic, cytotoxic, antimicrobial, and enzyme-inhibitory activities of tentacle extracts from five species of sea anemones (Cnidaria, orders Actiniaria and Corallimorpharia) collected near the Kuril and Commander Islands of the Far East of Russia were evaluated for the first time. The extracts of Liponema brevicorne and Actinostola callosa demonstrated maximal hemolytic activity, while high cytotoxic activity against murine splenocytes and Ehrlich carcinoma cells was found in the extract of Actinostola faeculenta. The extracts of Corallimorphus cf. pilatus demonstrated the greatest activity against Ehrlich carcinoma cells but were not toxic to mouse spleen cells. Sea anemones C. cf. pilatus and Stomphia coccinea are promising sources of antimicrobial and antifungal compounds, being active against Gram-positive bacteria Bacillus subtilis, Staphylococcus aureus, and yeast Candida albicans. Moreover, all sea anemones contain α-galactosidase inhibitors. Peptide mass fingerprinting of L. brevicorne and C. cf. pilatus extracts provided a wide range of peptides, predominantly with molecular masses of 4000–5900 Da, which may belong to a known or new structural class of toxins. The obtained data allow concluding that deep-sea anemones are a promising source of compounds for drug discovery.     

Permeability of plastic films to methyl bromide: a comparative laboratory study

The permeability of plastic films to the fumigant methyl bromide (MB) was measured by two different methods, in order to facilitate the selection of films which are impermeable to the gas. Polyethylene-based films are highly permeable to MB, as evidenced by both methods. In contrast, multilayer coextruded films which have a layer of barrier material such as polyamide (PA) or ethylene-vinyl alcohol copolymer (EVOH) were significantly less permeable to MB, as reflected by the parameters permeability rate, time to 90% concentration (TC₉₀, by the diffusion method) and lag-time values (by the variable-volume method). A significant correlation was found between the permeability rate assessed by the diffusion method and that obtained with the variable-volume method. Permeability of all films increased with temperature as evidenced by all tested parameters. This increase was more pronounced with polyethylene films, the permeabilities of which increased five- to six-fold when the temperature was increased from 20°C to 60°C. The effect of temperature on barrier-film permeability was less significant. Permeability of films to MB was affected by additional factors such as additives, the length of the monomer side-chain, and the thickness and density of polyethylene films. © 1998 SCI     

Grazing management strategies for Urochloa decumbens (Stapf) R. Webster in a silvopastoral system under rotational stocking

Our objective was to compare herbage accumulation and nutritive value of Urochloa decumbens (Stapf) R. Webster managed under pre-grazing canopy light interception (LI) targets of 90%, 95% and 100% in silvopastoral system (SPS) and 95% in open pasture (OP; U. decumbens under full sunlight) to establish a pre-grazing target for SPS of ~43% shade. The evaluations were made during two rainy seasons and one dry season. The total herbage accumulation in SPS was lower than in OP at all LI targets and seasons. However, the difference in total herbage accumulation between SPS and OP was reduced when SPS was harvested at 95% LI, with reductions of 20% and 28% in both rainy seasons (12,191 × 15,324 kg DM/ha and 11,158 × 15,424 kg DM/ha respectively). Moreover, under 95% LI in SPS, crude protein concentration was 18% and 19% greater than that in OP in both rainy seasons (155 × 131 g/kg DM and 144 × 121 g/kg DM respectively), thus representing the optimal pre-grazing LI target for U. decumbens in SPS. In addition, a canopy height of 20 cm was necessary for 95% LI in OP and a height of 40 cm in SPS. Therefore, U. decumbens should be grazed at 40 cm canopy height, in SPS with ~43% shade to keep 95% LI as the target. However, this target will only be effective if the shade level is maintained, which will reduce height variation over time.     

Microbial Diversity and Phage–Host Interactions in the Georgian Coastal Area of the Black Sea Revealed by Whole Genome Metagenomic Sequencing

Viruses have the greatest abundance and highest genetic diversity in marine ecosystems. The interactions between viruses and their hosts is one of the hot spots of marine ecology. Besides their important role in various ecosystems, viruses, especially bacteriophages and their gene pool, are of enormous interest for the development of new gene products with high innovation value. Various studies have been conducted in diverse ecosystems to understand microbial diversity and phage–host interactions; however, the Black Sea, especially the Eastern coastal area, remains among the least studied ecosystems in this regard. This study was aimed at to fill this gap by analyzing microbial diversity and bacteriophage–host interactions in the waters of Eastern Black Sea using a metagenomic approach. To this end, prokaryotic and viral metagenomic DNA from two sampling sites, Poti and Gonio, were sequenced on the Illumina Miseq platform and taxonomic and functional profiles of the metagenomes were obtained using various bioinformatics tools. Our metagenomics analyses allowed us to identify the microbial communities, with Proteobacteria, Cyanobacteria, Actinibacteria, and Firmicutes found to be the most dominant bacterial phyla and Synechococcus and Candidatus Pelagibacter phages found to be the most dominant viral groups in the Black Sea. As minor groups, putative phages specific to human pathogens were identified in the metagenomes. We also characterized interactions between the phages and prokaryotic communities by determining clustered regularly interspaced short palindromic repeats (CRISPR), prophage-like sequences, and integrase/excisionase sequences in the metagenomes, along with identification of putative horizontally transferred genes in the viral contigs. In addition, in the viral contig sequences related to peptidoglycan lytic activity were identified as well. This is the first study on phage and prokaryote diversity and their interactions in the Eastern coastal area of the Black Sea using a metagenomic approach.     

Endolysins from Antarctic Pseudomonas Display Lysozyme Activity at Low Temperature

Organisms specialized to thrive in cold environments (so-called psychrophiles) produce enzymes with the remarkable ability to catalyze chemical reactions at low temperature. Cold activity relies on adaptive changes in the proteins’ sequence and structural organization that result in high conformational flexibility. As a consequence of flexibility, several such enzymes are inherently heat sensitive. Cold-active enzymes are of interest for application in a number of bioprocesses, where cold activity coupled with easy thermal inactivation can be of advantage. We describe the biochemical and functional properties of two glycosyl hydrolases (named LYS177 and LYS188) of family 19 (GH19), identified in the genome of an Antarctic marine Pseudomonas. Molecular evolutionary analysis placed them in a group of characterized GH19 endolysins active on lysozyme substrates, such as peptidoglycan. Enzyme activity peaks at about 25–35 °C and 40% residual activity is retained at 5 °C. LYS177 and LYS188 are thermolabile, with Tm of 52 and 45 °C and half-lives of 48 and 12 h at 37 °C, respectively. Bioinformatics analyses suggest that low heat stability may be associated to temperature-driven increases in local flexibility occurring mainly in a specific region of the polypeptide that is predicted to contain hot spots for aggregation.