Fine-root rhizosphere and morphological adaptations to site conditions in interaction with tree mineral nutrition in young silver birch (<Emphasis Type="Italic">Betula pendula</Emphasis> Roth.) stands

Limited nutrient acquisition from soil is a key process limiting productivity in boreal forest. We investigated short-root morphological adaptations and rhizosphere effect in relation to site conditions in interaction with tree mineral nutrition. We studied seven young (8- to 14-year-old) silver birch (Betula pendula Roth.) stands on abandoned agricultural land in Estonia. Soil pH varied from 3.8 to 7.0, and soil N % from 0.07 to 0.26%. Tree nutrient (NPK) status was expressed by leaf nutrient concentrations. Leaf N correlated negatively with short-root specific length and area. Summed activity (SA) and metabolic diversity of bacteria (by BIOLOG Ecoplate™), bacterial community diversity (by DGGE) and pH_KCl were determined for rhizosphere (R) and bulk soil (S) to reveal the extent of the rhizosphere effect. Bacterial activity in rhizosphere was 1.4–4.7 times higher than in bulk soil. Ratio SA_R/SA_S indicating root support to the rhizosphere bacterial communities decreased with increasing bulk soil pH; however, when bulk soil pH was ≥5, the decrease in SA_R/SA_S was insignificant, i.e. the rhizosphere effect stayed at a stable level. Diversity of bacterial community was 6% higher in bulk soil than in rhizosphere. Rhizosphere acidification occurred in studied stands when bulk soil pH_KCl ≥ 5. Short-root N % correlated positively with SA_R/SA_S. We concluded that tree N-nutritional status was related to short-root morphological parameters but not to studied microbiological characteristics in the soil of young silver birch stands.     

Anatomy and dynamics of a supramolecular membrane protein cluster

Most plasmalemmal proteins organize in submicrometer-sized clusters whose architecture and dynamics are still enigmatic. With syntaxin 1 as an example, we applied a combination of far-field optical nanoscopy, biochemistry, fluorescence recovery after photobleaching (FRAP) analysis, and simulations to show that clustering can be explained by self-organization based on simple physical principles. On average, the syntaxin clusters exhibit a diameter of 50 to 60 nanometers and contain 75 densely crowded syntaxins that dynamically exchange with freely diffusing molecules. Self-association depends on weak homophilic protein-protein interactions. Simulations suggest that clustering immobilizes and conformationally constrains the molecules. Moreover, a balance between self-association and crowding-induced steric repulsions is sufficient to explain both the size and dynamics of syntaxin clusters and likely of many oligomerizing membrane proteins that form supramolecular structures.     

Direct prediction of site-specific lime requirement of arable fields using the base neutralizing capacity and a multi-sensor platform for on-the-go soil mapping

Precision Agriculture - Liming agricultural fields is necessary for counteracting soil acidity and is one of the oldest operations in soil fertility management. However, the best management...     

A miniaturized method for fast,simple, and sensitive pesticide analysis in soils

Journal of Soils and Sediments - Organochlorine pesticides (OCPs) like lindane and DDT have been used extensively after World War II until the 1990s. Still, residues of these pesticides can be...     

Comparison of two quantitative soil organic carbon models with a conceptual model using data from an agricultural long‐term experiment

Quantitative soil organic carbon (SOC) models are required for a better understanding of C sequestration in soils and for prognoses at different scenarios. However, it is unclear whether the major C‐stabilization mechanisms are included adequately. Objectives were (1) to test the performance of the CIPS (Carbon turnover In Pore Space) model and the Rothamsted Carbon (RothC) Model for a prediction of the SOC dynamics at the long‐term experiments at Halle (Germany) and (2) to compare the model structures of the quantitative models and a conceptual model in order to identify shortcomings of the quantitative models. Both quantitative models had a similar prediction performance: the C dynamics was predicted satisfactorily for the Halle sites under continuous rye with NPK fertilization or without any fertilization (1878–1953), but larger deviations between modeled and measured C contents were observed for the continuous rye and maize in the entire period from 1878 to 1996. The comparison of the conceptual model with the quantitative models revealed that the neglect of the black C dynamics and the interactions of SOC with mineral surfaces are not included explicitly. Site‐specific calibrations are required where these processes have a significant impact on soil organic matter dynamics. Furthermore, the number of pools and mechanisms in the conceptual model is higher than in the quantitative models independent of their level of abstraction. Despite the neglect of some important mechanisms in the quantitative models, it has to be noted that they reproduce the SOC data generally well in agricultural surface soils. Moreover, they need only few inputs which are generally easily obtainable.     

Pectin does not inhibit intestinal carcinogenesis in APC-deficient Min/+ mice

APC-germline mutation creates predisposition for intestinal tumorigenesis. APCMin/+ mice, developing tumors preferentially in the small intestine and only minimally in the colon, were fed pectin-enriched diets (10% galacturonan; degree of methoxylation=37.0 and 70.4%) or standard diet. Pectins used in the present study do not inhibit intestinal tumorigenesis and rather accelerate it in APCMin/+ mice. Both pectins exhibited prebiotic effects associated with high fermentative formation of acetate but producing low butyrate. The differences of the short-chain fatty acid concentrations between cecum and colon and those between colon and feces were larger than expected and increased with cancer progression, indicating an inhibition of butyrate absorption. Pectins transported more bile acids toward the colon than the standard diet and caused a higher generation of secondary bile acids despite lower pH values. Overexpression of COX-2 resulted in lower antioxidative capacity, thus promoting cancer. Apoptosis increased in hyperplasia but decreased in late adenomas. When biological modular design principles are taken into consideration, it can be expected that pectin also reinforces colorectal tumorigenesis of patients suffering from APC gene defects.     

Both wheat (Triticum aestivum) bran arabinoxylans and gut flora-mediated fermentation products protect human colon cells from genotoxic activities of 4-hydroxynonenal and hydrogen peroxide

Dietary fibers are fermented by the gut flora to yield short chain fatty acids (SCFAs), which inhibit the growth of tumor cells, induce glutathione S-transferases (GSTs), and protect cells from the genotoxic activity of 4-hydroxynonenal (HNE). Here, we investigated effects of wheat bran-derived arabinoxylans and fermentation products on these parameters of chemoprevention. Newly isolated water extractable (WeAx) and alkali extractable arabinoxylans (AeAx) were fermented under anaerobic conditions with human feces. Resulting fermentation supernatants (FSs) were analyzed for SCFAs and used to treat HT29 colon cancer cells. Cell growth, cytotoxicity, antigenotoxicity against hydrogen peroxide (H2O2) or HNE, and GST activity were determined. Nonfermented WeAx decreased H2O2-induced DNA damage by 64%, thus demonstrating chemoprotective properties by this nonfermented wheat bran fiber. The fermentation of WeAx and AeAx resulted in 3-fold increases of SCFA, but all FSs (including the control without arabinoxylans) inhibited the growth of the HT29 cells, reduced the genotoxicity of HNE, and enhanced the activity of GSTs (FS WeAx, 2-fold; FS AeAx, 1.7-fold; and control FS, 1.4-fold), which detoxify HNE. Thus, increases in SCFAs were not reflected by enhanced functional effects. The conclusion is that fermentation mixtures contain modulatory compounds that arise from the feces and might add to the effectiveness of SCFAs.     

A preliminary study on the genetic structure of Northern European pinus sylvestris L. by means of neutral nuclear microsatellite markers

This paper aimed to investigate the genetic structure (GS) of Scots pine in the northern area of its distribution range by means of seven neutral nuclear microsatellite markers. In particular, the postglacial recolonization of these areas and possible different adaptation patterns in distinct refugia were studied. The GS and diversity were assessed with seven pairs of neutral nuclear microsatellite primers. A high genetic diversity was found in the Scots pine material tested, along with a shallow GS. This pattern is typical for recolonized areas and species with large population sizes, which are connected by pollen-mediated gene flow. A STRUCTURE analysis found two genetic groups to be the most likely, one south-eastern and one north-western group that meet in Fennoscandia. This indicates that Scots pine recolonization of Fennoscandia might have taken place from two different directions (south-west and north-east). Scots pine that recolonized the area originated in at least two different refugia during the last glacial maximum. The glacial survival in distinct refugia can have led to different adaptation patterns and growth optima in the different groups as reflected in the formation of latewood content, where lineage was a significant influencing factor.