Concepts and Direction of Induced Systemic Resistance in Plants and its Application

Resistance to plant disease is often specific and metabolites and receptors contributing to this specificity may have specific structures. However, simple, structurally-unrelated compounds induce systemic resistance in unrelated plants to diverse pathogens including fungi, bacteria and viruses. Both resistance and induced systemic resistance (ISR) are associated with the rapid accumulation of the same structurally unrelated putative defense compounds that have diverse functions. It has been suggested that cultivar (race)-specific resistance is initiated by the specific interaction of a pathogen product (or pathogen induced product) and a plant receptor. However, restricted infection by pathogens can result in ISR and many different compounds can cause ISR. It is thus evident that there are both specific and non-specific routes to the master switch for ISR and there may be more than one master switch. Are reactive oxygen species and free radicals regulating the master switch(es) via both routes? It is also evident there are many switches, other than the master switch. Adding to the complexity of resistance and ISR are the observations that different compounds and pathways may mediate different biochemical resistances. Activation of one of the pathways may antagonize or enhance the activation or effectiveness of another. The review will address these complexities and questions and propose directions of research which require high priority. Factors which encourage and suppress the application of ISR in agriculture will also be addressed.     

Kinematic-wave model for soil-moisture movement with plant-root extraction

A kinematic-wave model is developed for simulating the movement of soil moisture in unsaturated soils with plants. The model involves three free boundaries. Analytical solutions are derived when the plant roots are assumed to extract moisture at a constant rate and the upstream boundary condition is independent of time. Numerical solutions are the only resort when the moisture extraction and the upstream boundary condition both depend on time.     

Hydroxycinnamoylmalic acids and their methyl esters from pear (Pyrus pyrifolia Nakai) fruit peel

Two novel caffeoylmalic acid methyl esters, 2-O-(trans-caffeoyl)malic acid 1-methyl ester (6) and 2-O-(trans-caffeoyl)malic acid 4-methyl ester (7), were isolated from pear (Pyrus pyrifolia Nakai cv. Chuhwangbae) fruit peels. In addition, 5 known hydroxycinnamoylmalic acids and their methyl esters were identified: 2-O-(trans-coumaroyl)malic acid (1), 2-O-(cis-coumaroyl)malic acid (2), 2-O-(cis-coumaroyl)malic acid 1-methyl ester (3), 2-O-(trans-coumaroyl)malic acid 1-methyl ester (4), and 2-O-(trans-caffeoyl)malic acid (phaselic acid, 5). The chemical structures of these compounds were determined by spectroscopic data from ESI MS and NMR. Of all the isolated compounds, five hydroxycinnamoylmalic acids and their methyl esters (2-4, 6, 7) were identified in the pear for the first time.     

The future of tropical species in secondary forests: A quantitative review

Deforestation and degradation of tropical old-growth forests has the potential to cause catastrophic species extinctions. In this review, we assess whether regenerating secondary forests (SF) can support species typically found in old-growth forest (OG) and so prevent extinctions. We review 65 studies that compare faunal diversity in SF and corresponding OG, and compare the similarity of species composition both within and between these two forest types using the Sorensen, Morisita-Horn and Sorensen-Chao indices. Comparisons between traditional similarity indices and Sorensen-Chao, which minimizes sampling biases, indicated that limited sampling effort consistently reduced apparent similarity between SF and OG and that similarity between SF and OG is actually higher than previously appreciated. Similarity, which ranges from 0 to 1, varied from 0.49 to 0.92 between replicate OG sites and was correlated with similarity between SF and OG. This correlation might be an artefact of variation among studies in sampling effort, especially for vertebrates where small samples reduce apparent similarity across all comparisons, as well as a real effect of variation among studies in landscape heterogeneity and the presence of species with patchy distributions. Therefore, similarity between SF and OG cannot be interpreted without an understanding of background variation in OG. Similarity between different SF sites provided no evidence that disturbance specialists dominate SF. Similarity to OG increased rapidly with SF age; when SF was contiguous with OG; when SF was growing in small clearings; and after low intensity land uses including clearing only, shifting agriculture and tree plantations. This describes the most frequently observed tropical SF; isolated from roads and on hilly terrain unsuitable for mechanized agriculture. Thus, our analyses indicate that tropical SF can play an important role in biodiversity conservation particularly when OG forests are nearby. An important caveat remains, however. Abundance, geographic range and levels of habitat specialization are often related. Widespread, abundant, habitat generalists might dominate similarity analyses even when relatively rare OG specialists are present. Additional species-level analyses of habitat specialization will be needed before the conservation value of tropical SF is fully understood.     

Response of soil properties and yam yield to Chromolaena odorata (Asteraceae) and Tithonia diversifolia (Asteraceae) mulches

Plant materials differ in their chemical composition, rate of decomposition and suitability as mulch materials. Experiments were conducted during 2006–2007 and 2007–2008 cropping seasons for early yam cultivation at Owo in the forest–savanna transition zone of southwest Nigeria to study the effect of Chromolaena odorata and Tithonia diversifolia mulches applied at 0.0, 5.0, 7.5, 10.0 and 12.5 t ha^?1 on soil chemical properties, leaf nutrient composition, growth and tuber yield of white yam (Dioscorea rotundata Poir). Both C. odorata and T. diversifolia mulches reduced soil bulk density and temperature; increased concentrations of soil organic matter (SOM), total N, available P, exchangeable K, Ca and Mg, leaf N, P, K, Ca and Mg; enhanced growth and yield of yam compared with control. The values of SOM, total N and available P and leaf N and P concentrations increased with increasing mulch rate. C. odorata mulch and T. diversifolia mulch applied at 10.0 and 7.5 t ha^?1, respectively, was found to be suitable for yam production. T. diversifolia mulch compared with C. odorata mulch produced higher values of soil chemical properties, leaf nutrient concentrations, growth and yield of yam. T. diversifolia mulch produced 19% and 18% higher tuber yield compared with C. odorata mulch during 2006–2007 and 2007–2008 cropping seasons, respectively.     

Revisiting rice breeding methods – evaluating the use of rapid generation advance (RGA) for routine rice breeding

Rice production needs to increase in the future in order to meet increasing demands. The development of new improved and higher yielding varieties more quickly will be needed to meet this demand. However, most rice breeding programmes in the world have not changed in several decades. In this article, we revisit the evidence in favour of using rapid generation advance (RGA) as a routine breeding method. We describe preliminary activities at the International Rice Research Institute (IRRI) to re-establish RGA on a large scale as the main breeding method for irrigated rice breeding. We also describe experiences from the early adoption at the Bangladesh Rice Research Institute. Evaluation of RGA breeding lines at IRRI for yield, flowering time and plant height indicated transgressive segregation for all traits. Some RGA lines were also higher yielding than the check varieties. The cost advantages of using RGA compared to the pedigree method were also empirically determined by performing an economic analysis. This indicated that RGA is several times more cost effective and advantages will be realized after 1 year even if facilities need to be built. Based on our experience, and previous independent research empirically testing the RGA method in rice, we recommend that this method should be implemented for routine rice breeding in order to improve breeding efficiency.     

Correction to: Individual based modelling of fish migration in a 2-D river system: model description and case study

Landscape Ecology - In the original publication of the article, the third author name has been misspelt. The correct name is given in this Correction. The original version of this article was revised.     

Speciation of arsenic in different types of nuts by ion chromatography-inductively coupled plasma mass spectrometry

In this work the quantitative determination and analytical speciation of arsenic were undertaken in different types of nuts, randomly purchased from local markets. The hardness of the whole nuts and high lipid content made the preparation of this material difficult for analysis. The lack of sample homogeneity caused irreproducible results. To improve the precision of analysis, arsenic was determined separately in nut oil and in the defatted sample. The lipids were extracted from the ground sample with the two portions of a mixture of chloroform and methanol (2:1). The defatted material was dried and ground again, yielding a fine powder. The nut oil was obtained by combining the two organic extracts and by evaporating the solvents. The two nut fractions were microwave digested, and total arsenic was determined by inductively coupled plasma mass spectrometry (ICP-MS). The results obtained for oils from different types of nuts showed element concentration in the range 2.9-16.9 ng g(-)(1). Lower levels of arsenic were found in defatted material (<0.1 ng g(-)(1) with the exception of Brazil nuts purchased with and without shells, 3.0 and 2.8 ng g(-)(1) respectively). For speciation analysis of arsenic in nut oils, elemental species were extracted from 2 g of oil with 12 mL of chloroform/methanol (2:1) and 8 mL of deionized water. The aqueous layer, containing polar arsenic species, was evaporated and the residue dissolved and analyzed by ion chromatography-ICP-MS. The anion exchange chromatography enabled separation of As(III), dimethylarsinic acid (DMAs(V)), monomethylarsonic acid (MMAs(V)), and As(V) within 8 min. Several types of nuts were analyzed, including walnuts, Brazil nuts, almonds, cashews, pine nuts, peanuts, pistachio nuts, and sunflower seeds. The recovery for the speciation procedure was in the range 72.7-90.6%. The primary species found in the oil extracts were As(III) and As(V). The arsenic concentration levels in these two species were 0.7-12.7 and 0.5-4.3 ng g(-)(1), respectively. The contribution of As in DMAs(V) ranged from 0.1 +/- 0.1 ng g(-)(1) in walnuts to 1.3 +/- 0.3 ng g(-)(1) in pine nuts. MMAs(V) was not detected in almonds, peanuts, pine nuts, sunflower seeds, or walnuts, and the highest concentration was found in pistachio nuts (0.5 +/- 0.2 ng g(-)(1)).