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Evidence for two predominant viral lineages,recombination and subpopulation structure in begomoviruses associated with yellow vein mosaic disease of okra in India 下载免费PDF全文
V. Venkataravanappa H. C. Prasanna C. N. Lakshminarayana Reddy M. Krishna Reddy 《Plant pathology》2015,64(3):508-518
Yellow vein mosaic disease (YVMD) caused by whitefly‐transmitted begomoviruses is an economically significant viral disease of okra. In this study, a survey of begomoviruses associated with YVMD was carried out in eight states and two union territories of India. A total of 92 full‐length DNA‐A components were sequenced and characterized. Sequence comparisons and population structure analysis revealed the existence of four begomovirus species. Two novel species were detected with several recombinationally derived genome fragments that probably originated from begomoviruses known to infect malvaceous and non‐malvaceous hosts. Among the four species, Bhendi yellow vein Maharastra virus (BYVMaV) and Bhendi yellow vein Madurai virus (BYVMV) were found to be predominant in okra, with BYVMV having a pan‐India distribution. There was evidence for a high degree of genetic variability and subpopulation structure within these four species. Neutrality tests suggested the occurrence of purifying selection acting upon these populations. The results of the current study have uncovered the diversity and genetic structure of okra‐infecting begomoviruses in India and generated potentially useful information for developing management strategies for YVMD. 相似文献
54.
Jasmonic and salicylic acid-induced resistance in sorghum against the stem borer Chilo partellus 总被引:1,自引:0,他引:1
Induced resistance was studied in three sorghum genotypes (IS2205, ICSV1 and ICSV700) against Chilo partellus (Swinhoe) (Lepidoptera; Pyralidae) infestation and jasmonic acid (JA) and salicylic acid (SA) application. The activity of plant defensive enzymes [peroxidase (POD), polyphenol oxidase (PPO), superoxide dismutase (SOD), and catalase (CAT)], and the amounts of total phenols, hydrogen peroxide (H2O2), malondialdehyde (MDA), and proteins were recorded at 6 days after infestation. The induction of enzyme activities and the amounts of secondary metabolites varied among the genotypes and treatments. The genotype IS2205 showed a stronger effect than that of ICSV1 or ICSV 700. Treatment with JA followed by insect infestation induced greater levels of enzymes and secondary metabolites. The results suggest that JA induces greater levels of resistance components in sorghum plants against insect pests. Thus, pretreatment of plants with elicitors including JA and SA could provide a greater opportunity for plant defense against herbivores. 相似文献
55.
M. Vetriventhan Hari D. Upadhyaya C. R. Anandakumar S. Senthilvel R. K. Varshney Heiko K. Parzies 《Euphytica》2014,196(3):423-435
Use of diverse germplasm is a key factor which allows high level of resolution due to extensive recombination in the history. Therefore, population used in association mapping should posses as many phenotypes as possible. One of the methods to obtain most of the phenotypes is to construct the core collection. The ICRISAT foxtail millet core collection consisting of 155 accessions was genotyped using 72 simple sequence repeat (SSR) markers to investigate the genetic diversity, population structure and linkage disequilibrium (LD). A high degree of molecular diversity among the accessions was found, with an average of 16.69 alleles per locus. STRUCTURE analyses classify the accessions into four subpopulations (SP) based on SSR allelic diversity. The Neighbor joining clustering and the principal coordinate analysis were in accordance with the racial classification. The distribution of molecular genetic variation among and within the four SP and three races showed high degree of variability within each group, and low level of genetic distance (GD) among the groups. LD decay of <40 cM of GD in foxtail millet core collection was observed, which suggests that it could be possible to achieve resolution down to the 40 cM level. From this investigation, it is evident that the foxtail millet core collection developed at ICRISAT is very diverse and could be a valuable resource for trait association mapping, crop breeding and germplasm management. 相似文献
56.
Maarit Raivonen Timo Vesala Liisa Pirjola Nuria Altimir Petri Keronen Markku Kulmala Pertti Hari 《Agricultural and Forest Meteorology》2009,149(6-7):1073-1081
The compensation point of bidirectional NOx fluxes of plants is often determined in chamber measurements by varying the NOx concentration and searching for the point where the net flux is zero. We hypothesized that the compensation point can vary with changing conditions so much that one constant value is not sufficiently accurate. The compensation point for NOx fluxes of Scots pine was analysed with a model describing the NOx consumption and production processes. Consumption was assumed to occur via the stomata and on needle surfaces, with the rate depending on ambient concentration and degree of stomatal opening. Production was assumed to occur on the needle surfaces depending on solar UV-A irradiance. We used NOy flux data measured with two gas-exchange chambers in southern Finland to parameterize the model. The estimated compensation points increased with increasing UV-A irradiance and decreased with increasing stomatal conductance. With open stomata, it varied several ppb even under field conditions. 相似文献
57.
Krishna Hari Dhakal Yeon-Shin Jeong Jeong-Dong Lee In-Youl Baek Tae-Joung Ha Young-Hyun Hwang 《Journal of Crop Science and Biotechnology》2009,12(2):97-101
Fatty acid composition and C18:2:C18:3 of soybean seed and sprout is important for soy-industries to manufacture quality products. Six soybean varieties were analyzed
by gas chromatography to determine fatty acid composition and linoleic to linolenic acid ratio (C18:2:C18:3) in seed, sprout, and their structural parts. In the case of whole seed and its structural parts, significant variation in
fatty acid composition and C18:2:C18:3 were observed between varieties except palmitic acid (C16:0), while all the parameters were significantly different for seed parts. Significant interactions of variety with seed parts
were observed for oleic acid (C18:1), C18:2 and C18:2:C18:3. The highest saturated fatty acid, C18:1 and polyunsaturated fatty acid were recorded in seed coat, cotyledon, and seed axis, respectively. The lowest C18:2:C18:3 was found in seed axis. In the case of sprout study, variety had significant effect on all the parameters observed for whole
sprout, cotyledon, root, and except C18:3 for hypocotyl. Culture days had significant effect on C16:0, C18:2 and C18:3 in whole sprouts, while only on C18:3 and C18:2:C18:3 in cotyledon. For hypocotyl, culture days had significant effect on C18:1, C18:2 and C18:2:C18:3, however, C16:0, C18:1, C18:3, and C18:2:C18:3 were significantly different in root. In sprout, days and variety interacted significantly for C16:0, C18:3 and C18:2:C18:3, and C18:1, C18:2, C18:3, and C18:2:C18:3, respectively for whole, cotyledon, and root. The significantly lowest C18:2:C18:3 (1.1) was observed in hypocotyl and root of Hwangkeumkong in 5 days. Knowledge of fatty acid composition and C18:2:C18:3 of seed, sprout, and their parts could be applicable for oil and other soy-food industries to make quality products. 相似文献
58.
Kali Krishna Hazra Probir Kumar Ghosh Madasur Subbabhat Venkatesh Chaitanya Prasad Nath Narendra Kumar Mohan Singh 《Archives of Agronomy and Soil Science》2018,64(12):1690-1704
Long-term effect of mungbean inclusion in lowland rice-wheat and upland maize-wheat systems on soil carbon (C) pools, particulate organic C (POC), and C-stabilization was envisaged in organic, inorganic and without nutrient management practices. In both lowland and upland systems, mungbean inclusion increased very-labile C (Cfrac1) and labile C (Cfrac2) in surface soil (0–0.2 m). Mungbean inclusion in cereal-cereal cropping systems improved POC, being higher in lowland (107.4%). Lowland rice-based system had higher passive C-pool (11.1 Mg C ha?1) over upland maize-based system (6.6 Mg C ha?1) indicating that rice ecology facilitates the stabilization of passive C-pool, which has longer persistence in soil. Organic nutrient management (farmyard manure + full crop residue + biofertilizers) increased Cfrac1 and carbon management index (CMI) over inorganic treatment. In surface soil, higher CMI values were evident in mungbean included cropping systems in both lowland and upland conditions. Mungbean inclusion increased grain yield of cereal crops, and yield improvement followed the order of maize (23.7–31.3%) > rice (16.9–27.0%) > wheat (lowland 7.0–10.7%; upland 5.4–16.6%). Thus, the inclusion of summer mungbean in cereal-cereal cropping systems could be a long-term strategy to enrich soil organic C and to ensure sustainability of cereal-cereal cropping systems. 相似文献
59.
V. Sandhya M. Shrivastava Sk. Z. Ali V. Sai Shiva Krishna Prasad 《Russian Agricultural Sciences》2017,43(1):22-34
In the present study, 39 endophytic bacteria were isolated from different crops with main focus on maize roots and seeds. Endophytes were screened for drought stress tolerance, plant growth promoting (PGP) traits and antifungal activity. Out of 39 isolates, 32 could show drought tolerance up to–1.02 matric potential (MPa) and exhibited most of the plant growth promoting traits. But, only five isolates could show antagonistic activity against plant fungal pathogens. Based on the results, 10 promising isolates namely FTR, NFTR, FMZR9, FMZR2, MZ30V92, MRC12, MRC31, MRC33, MRC41 and MRR2 were selected and identified using biochemical and 16S rDNA gene sequencing as Pseudomonas aeruginosa (strains FTR and NFTR), Pseudomonas monteilii (strain FMZR2), Pseudomonas putida (strain FMZR9), Acitenobacter brumalii (strain MZ30V92), Enterobacter asburiae (strain MRC12), Sinorhizobium meliloti (strain MRC31), Pseudomonas thivervalensis (strain MRC33), Pseudomonas fulva (strain MRC41), and Pseudomonas lini (strain MRR2). Further, at–1.02 MPa all the 10 isolates showed PGP traits, and 3 isolates (FTR, NFTR and MRC12) showed antifungal activity. Thus, indicating that drought tolerant plant growth promoting antagonistic endophytic bacteria (PGPAE) helps in plant growth and disease management under drought stress. 相似文献
60.
Gaurav Mishra Rossana Marzaioli Krishna Giri Rinkumoni Borah Antara Dutta R.S.C. Jayaraj 《Archives of Agronomy and Soil Science》2017,63(10):1355-1368
The study aimed to evaluate the impact of shifting cultivation on soil quality, in Wokha district of Nagaland, using weighted soil quality index (SQIw). Four forest sites and three sites under shifting cultivation were selected and physical (texture and bulk density) and chemical (pH, electrical conductivity, cation exchange capacity, organic carbon, available N, P, K, exchangeable cations) parameters were analyzed. The SQIw was calculated on a minimum data set selected by principal component analysis, followed by varimax rotation algorithm and through subsequent normalization of the parameters using the linear scoring function. Significant (P < 0.05) variations in SQIw were found across the depth of the soil and land use according to severity of factors associated with land use. Three different classes of soil quality were also identified: high quality (SQIw > 0.70) for two forest soils (FS1 and FS2) and land under shifting cultivation (JH1), low quality (SQIw < 0.50), only to FS3, and intermediate quality (0.50 < SQI < 0.70) in all other soils. The approach used in this study proved to be sensitive to evaluate the soil quality, however further research is required to better understand the sustainability of shifting cultivation by including more physical, biological and chemical indicators. 相似文献