The bioavailability of sediment-sorbed organic chemicals: A review

Xenobiotic chemicals that are present in aquatic environments are typically concentrated on suspended particles and sedimentary materials where they represent a source of chronic contamination to benthic and pelagic organisms. Laboratory and field studies of bioaccumulation, toxicity, and food-chain transfer of chemicals bound to sediment have shown the potential ecological impacts that may result from the contamination of sediments. In this review, the chemical and physical processes that determine the environmental fate of sediment-sorbed organic chemicals are outlined, and their relationship to bioavailability is discussed. Methods currently used to predict the fate of pollutants in the aquatic environment are of limited use for the assessment of sediment-sorbed chemical bioavailability because they are based on the compound's behavior in the water column. Furthermore, an organism's morphology and ecological niche can profoundly affect its ability to accumulate xenobiotic chemicals from sediments and these must be considered before the populations at greatest risk can be identified.     

Integrating landscape resistance and multi-scale predictor of habitat selection for amphibian distribution modelling at large scale

Context

Species distribution modelling is a common tool in conservation biology but two main criticisms remain: (1) the use of simplistic variables that do not account for species movements and/or connectivity and (2) poor consideration of multi-scale processes driving species distributions.

Objectives

We aimed to determine if including multi-scale and fine-scale movement processes in SDM predictors would improve accuracy of SDM for low-mobility amphibian species compared with species-level analysis.

Methods

We tested and compared different SDMs for nine amphibian species with four different sets of predictors: (1) simple distance-based predictors; (2) single-scale compositional predictors; (3) multi-scale compositional predictors with a priori selection of scale based on knowledge of species mobility and scale-of-effect; and (4) multi-scale compositional predictors calculated using a friction-based functional grain to account for resource accessibility with landscape resistance to movement.

Results

Using friction-based functional grain predictors produced slight to moderate improvements of SDM performance at large scale. The multi-scale approach, with a priori scale selection, led to ambiguous results depending on the species studied, in particular for generalist species.

Conclusion

We underline the potential of using a friction-based functional grain to improve SDM predictions for species-level analysis.

     

Changes in Collembola richness and diversity along a gradient of land-use intensity: A pan European study

Changes in Collembola richness and diversity along a land-use intensity gradient were studied in eight European countries (Portugal, Spain, France, Switzerland, Hungary, UK, Ireland and Finland). In each country a set of six 1 km² land-use units (LUUs) were selected forming a gradient ranging from natural forest to agricultural dominated landscapes, passing through mixed-use ones. In addition to data on Collembola, detailed information regarding landscape diversity and structure was collected for each LUU. A total of 47,774 individuals were identified from 281 species. Collembola reacted not only to changes in the diversity of the landscape, but also to the composition of that diversity and the area occupied by each land-use type at each LUU. Although species richness patterns were not concordant among the different countries, the total number of species per LUU (landscape richness) was generally higher in natural forests and mixed-used landscapes, and lower in agricultural dominated landscapes. Moreover, high richness and diversity of Collembola at each LUU were associated with a diverse landscape structure, both in terms of number of patches and patch richness. Despite this comparable species richness between mixed-use landscapes and those dominated by natural forests, average species richness on forested areas (local richness) decreased along the gradient, showing that forest patches on mixed-use landscapes support a lower richness than in landscapes dominated by forest. This aspect is important when addressing the role of native forests in structuring biodiversity in disturbed and fragmented landscapes. Although a diverse landscape can support a high biodiversity, the results suggest that intensive fragmentation should be avoided with the risk of collapsing local species richness with the consequent result for regional biodiversity.     

Effect of Kaolin concentration on distribution coefficient of copper

Varying amounts of H⁺-Kaolin were equilibrated with spiked (high activity radioactive⁶⁴Cu) water and kept overnight in a constant temperature water bath shaker. After proper filtration, through 0.45 µm Millipore memberane, the amount of radioactivity on the filter paper and the filtrate was measured separately using a Gamma ray well counter. Adsorption of Cu (expressed as distribution coefficient ? K_d) was plotted against the final clay concentration. Kd values decrease initially with increasing clay concentration and then seem to reach an equilibrium condition at higher clay concentrations. At low clay concentration higher particle aggregation (nucleation) of the metal with clay in suspension is a possible explanation for this behavior.     

Behavior of phenol and aniline on selected sorbents and energy-related solid wastes

The sorption and desorption of phenol and aniline on selected soils and soil components and on some energy-related solid wastes were investigated. Isotherms were generally nonlinear and were described usually by the Freundlich equation. Most partition coefficients were low, and no significant correlation was shown with organic C content, pH, cation exchange capacity, or particle-size of the sorbent. It appears that sorption of small polar aromatic compounds, such as phenol and aniline, cannot be defined by a single sorbent characteristic, but is affected by both the organic and mineral components of the sorbents. Hysteresis was observed in most sorption-desorption experiments; a fraction of the sorbate was irreversibly held by the sorbent.     

Functional targeting of DNA damage to a nuclear pore-associated SUMO-dependent ubiquitin ligase

Recent findings suggest important roles for nuclear organization in gene expression. In contrast, little is known about how nuclear organization contributes to genome stability. Epistasis analysis (E-MAP) using DNA repair factors in yeast indicated a functional relationship between a nuclear pore subcomplex and Slx5/Slx8, a small ubiquitin-like modifier (SUMO)-dependent ubiquitin ligase, which we show physically interact. Real-time imaging and chromatin immunoprecipitation confirmed stable recruitment of damaged DNA to nuclear pores. Relocation required the Nup84 complex and Mec1/Tel1 kinases. Spontaneous gene conversion can be enhanced in a Slx8- and Nup84-dependent manner by tethering donor sites at the nuclear periphery. This suggests that strand breaks are shunted to nuclear pores for a repair pathway controlled by a conserved SUMO-dependent E3 ligase.     

Leishmania RNA virus controls the severity of mucocutaneous leishmaniasis

Mucocutaneous leishmaniasis is caused by infections with intracellular parasites of the Leishmania Viannia subgenus, including Leishmania guyanensis. The pathology develops after parasite dissemination to nasopharyngeal tissues, where destructive metastatic lesions form with chronic inflammation. Currently, the mechanisms involved in lesion development are poorly understood. Here we show that metastasizing parasites have a high Leishmania RNA virus-1 (LRV1) burden that is recognized by the host Toll-like receptor 3 (TLR3) to induce proinflammatory cytokines and chemokines. Paradoxically, these TLR3-mediated immune responses rendered mice more susceptible to infection, and the animals developed an increased footpad swelling and parasitemia. Thus, LRV1 in the metastasizing parasites subverted the host immune response to Leishmania and promoted parasite persistence.     

Development of a Potato Cultivar (<Emphasis Type="Italic">Solanum tuberosum</Emphasis> L.) Core Collection,a Valuable Tool to Prospect Genetic Variation for Novel Traits

This study presents the development of a core collection capturing the genetic diversity of a collection of 350 tetraploid cultivated potato varieties (Solanum tuberosum L.). The core collection was established by using simple sequence repeats (SSR) data and the M strategy, which aims at maximizing the allelic diversity. A 48-core collection was defined which captured 99.5% of the SSR alleles used to establish it, and 96.9% of the SSR alleles which belonged to an independent set of markers. The defined core collection was further validated by analysing 35 agro-morphological traits. The class coverage value and the estimates of the Shannon-Weaver diversity index indicated a good representation of the phenotypic diversity in the core collection. Furthermore, the core set included accessions having the most desirable status for several agronomic traits. A linkage disequilibrium (LD) analysis, using data obtained with the SolCAP SNP array on the defined core collection, was performed. The population structure analysis showed that the core collection did not present a clear genetic structure. The linkage disequilibrium analysis carried out between markers located on the same pseudomolecule within 10,000 bp concluded that 41.3% of these pairs of SNP markers have a significant LD. We conclude that this core collection, representative of the genetic diversity of cultivated potato varieties, is a relevant tool for a first screening for genetic variation regarding novel traits of interest.     

Active surveillance of bat rabies in France: a 5-year study (2004-2009)

Active surveillance of bats in France started in 2004 with an analysis of 18 of the 45 bat species reported in Europe. Rabies antibodies were detected in six indigenous species, mainly in Eptesicus serotinus and Myotis myotis, suggesting previous contact with the EBLV-1 rabies virus. Nineteen of the 177 tested bats were shown serologically positive in seven sites, particularly in central and south-western France. Neither infectious viral particles nor viral genomes were detected in 173 and 308 tested oral swabs, respectively. The presence of neutralising antibodies in female bats (18.6%) was significantly higher than in males (5.6%).