Intra‐annual changes in reproductive indices of male and female Himalayan snow trout,Schizothorax richardsonii (Gray, 1832)

Periodic changes in reproductive hormone levels, gonadal histology and gonadosomatic index (GSI) of snow trout, Schizothorax richardsonii, were examined to ascertain annual cycle of gonadal development and reproductive status in their natural habitat. In females, there were coherent changes in plasma 17β‐oestradiol and vitellogenin along with GSI, oocyte maturation and vitellogenic progression, collectively indicating two distinct maturation peaks during the months of September and February. Coinciding with this, in males, plasma 11‐keto testosterone was also noticeably higher during September and February, with highest GSI values in September. However, plasma 17α, 20β‐dihydroxyprogesterone levels in males were found to be persistently high from September to February. This observation suggests the potential presence of matured oozing males over a longer period, unlike in females. Overall, the close association between reproductive hormone levels, GSI and gonadal maturation stages in males and females (particularly, the presence of postovulatory follicle complexes) with apparent natural synchronization clearly indicates that S. richardsonii breeds twice in a year, possibly during late September to early November and late February to early April in the coldwater riverine habitats of the Indian Himalayan region.     

Genetic variation among and within populations of <Emphasis Type="Italic">Cordia africana</Emphasis> in seed size and germination responses to constant temperatures

Cordia africana Lam. is a commercial timber species that grows naturally throughout sub-Saharan Africa and tropical Arabia. At present very little is known about genetic variation in this species and baseline information is needed to initiate improvement programs in Ethiopia. Thus, the objectives of the study were to quantify the inter- and intra-population variations in seed size traits and germination responses to different constant temperature regimes. Seeds were collected from 30 open-pollinated families within each of the five populations representing the natural distribution of the species in Ethiopia. To examine seed size variations, seed length, seed width, and 1,000-seed weight were quantified. Inter- and intra-population variations in seed germination were investigated under different constant temperature regimes from 20 to 35°C in climate chambers. Significant variations in seed length, width and weight were detected both at inter- and intra-population levels, and family heritabilities of 0.63–0.76 showed that much of the phenotypic variation in seed size traits were additive genetic variation. Significant variation in germination was also found among and within populations as well as between the different constant temperature regimes. Generally the variation in germination was considerably higher within population than between populations. The optimal temperature for germination of C. africana seeds was 25–30°C with family heritabilities for germination ranging between 0.20 and 0.33, depending on the germination temperature.     

Response and effect traits of arable weeds in agro‐ecosystems: a review of current knowledge

Integrating principles of ecological intensification into weed management strategies requires an understanding of the many relationships among weeds, crops and other organisms of agro‐ecosystems in a changing context. Extensively used during the last two decades in weed science, trait‐based approaches have provided general insights into weed community response to agricultural practices, and recently to understanding the effect of weeds on agro‐ecosystem functioning. In this review, we provide a holistic synthesis of the current knowledge on weed response and effect functional traits. Based on the literature and recent advances in weed science, we review current knowledge on (i) weed functional groups and ecological strategies, (ii) weed functional response traits to cropping systems and (iii) weed functional effect traits affecting agro‐ecosystem functioning. For each functional trait, we explicitly present the assumptions and evidence on the linkage between trait values and ecological functions, in response to either management practices, for example tillage, sowing and herbicides, or biotic interactions, for example crop–weed competition and pollination. Finally, we address and discuss major research avenues that may significantly improve the use of traits and the knowledge of functional diversity in weed science for the future, especially to design and implement more environmentally sustainable weed management strategies.     

No evidence for avoidance of black rat scent by the presumably less competitive Natal multimammate mouse in a choice experiment

In Africa, indigenous multimammate mice (Mastomys natalensis) only appear to live commensally in houses when invasive black rats (Rattus rattus) are absent, yet little is known about the underlying mechanism. Avoidance through smell may cause the absence of M. natalensis from areas occupied by R. rattus, but this hypothesis has not yet been tested. We conducted a Y-maze choice experiment where 15 M. natalensis were offered a choice between corridors containing conspecific scent, R. rattus scent and a control scent. Residence time in the R. rattus corridor was greater than that in the control corridor but equal to that in the M. natalensis corridor, suggesting that multimammate mice do not actively avoid the scent of their invasive competitor.     

Assessment of Marginal Quality Water for Sustainable Irrigation Management: Case Study of Bahr El-Baqar Area,Egypt

Treated wastewater (TWW) is an imperative nonconventional water resource for reuse in irrigation to cope with the water shortage and agricultural expansion in Egypt. The Bahr El-Baqar drain in Sharqia, Egypt, is one of the main drains in the Nile Delta that receives various types of wastewater. Monitoring and assessing the drain’s water quality were achieved by collecting georeferenced water samples along the drain during the 2015 summer and winter cropping seasons. Chemical, microbial, and parasitic analyses were performed. Additionally, surface soil samples irrigated with the drain water were gathered from the adjacent area to quantify the main physicochemical properties. Water analysis results revealed that the concentrations of most trace elements were within international standards and the Egyptian allowable levels for TWW reuse in agriculture. Oxygen depletion was observed for all samples collected. The microbial analysis indicated that there was fecal coliform contamination (>1000 per 100 mL) in the summer and winter samples. Concentrations of PO₄ and SO₄ were within the permissible level for irrigation use, whereas NH₄, NO₃, and MoO₄ concentrations were higher than the recommended values for reusing Bahr El-Baqar water in irrigation. Based on the soil analysis results, Cd contamination was observed, whereas the Pb concentration in soils was slightly higher than its normal range. Mixing Bahr El-Baqar water with freshwater and implementing appropriate on-farm treatment before the reuse are recommended as a prerequisite for reusing Bahr El-Baqar water for irrigation. Bio-diesel fuel and energy oil crops are recommended for the studied region.     

Comparison of different testing schemes to increase the detection <Emphasis Type="Italic">Mycobacterium bovis</Emphasis> infection in Ethiopian cattle

Host immune responses to Mycobacterium bovis (M. bovis) infection are variable at the different severity stages of pathology of the disease. In countries like Ethiopia, where routine screening of bovine TB is not undertaken, the use of tests which measure cellular and antibody responses may help for the maximum detection of infection. In the present study, 701 cattle were tested for bovine tuberculosis (BTB) using comparative intradermal tuberculin (CIDT) test, interferon (IFN)-γ test, and lateral flow assay. The apparent prevalence was 32% when all the three tests were used, but varied from 23 to 25% when a pair of tests was used and from 9% to 15% when a single test was used. Agreement was observed between CIDT and IFN-γ tests both at a cut-off >2 mm (Kappa ± standard Error, k ± SE, 0.129 ± 0.045; 95%CI = 0.041,0.216) and a cut-off >4 mm (k ± SE, 0.094 ± 0.044, 95%CI = 0.008,0.179) while no agreement was observed either between CIDT test and lateral flow assay (k ± SE, −0.04 ± 0.033; 95%CI = −0.104,0.024) or between IFN-γ tests and lateral flow assay (k ± SE, −0.031 ± 0.032; 95% CI = −0.093,0.031). Thus, the use of more than one test leads to the detection of the maximum number of infected animals.     

Optimum irrigation and pond operation to move away from exclusively rainfed agriculture: the Boru Dodota Spate Irrigation Scheme, Ethiopia

Under rainfed agriculture without supplementary supply, crop failure due to erratic rainfall has become a common phenomenon in many regions of Ethiopia. Spate irrigation development with storage provision at the 5,000 ha Boru Dodota Spate Irrigation Scheme is one of the initiatives to move away from exclusively rain-dependent agriculture. This initiative has faced several challenges. Lack of design experience and failure to fully grasp the unpredictable nature of the spate flow caused the Boru Dodota Spate Irrigation Scheme to be implemented without considering the necessity of storage ponds. In addition, absence of a systematic approach to assist planners has resulted in non-optimal design of ponds’ capacity and operation. The study, on which this article is based, aimed at optimum storage operation to irrigate the maximum possible area with the existing ponds’ capacity and available water resource. During the study, the surface storage and irrigation scheme planning model was developed and used to analyze several pond operation scenarios in Boru Dodota Spate Irrigation Scheme. The main findings were as follows: (1) Supplementing the rainfall with the operation of the existing 19 ponds that enable weekly irrigation frequency results in irrigating at least 6,600 ha. (2) An increase in the number of ponds does not always guarantee an increase in the size of irrigated land because the water resources, the operation, and management are defining factors. (3) It is not economical to only rely on spate flow for irrigation as even with 200 ponds, a maximum of 1,250 ha could be irrigated.     

Food volatile compounds facilitating HII mesophase formation: solubilization and stability

Four lipophilic food volatile molecules of different chemical characteristics, phenylacetaldehyde, 2,6-dimethyl-5-heptenal, linalool, and trans-4-decenal, were solubilized into binary mixtures of monoolein/water, facilitating the formation of reverse hexagonal (H(II)) mesophases at room temperature without the need of solvents or triglycerides. Some of the flavor compounds are important building blocks of the hexagonal mesostructure, preventing phase transition with aging. The solubilization loads were relatively high: 12.6, 10.0, 12.6, and 10.0 wt % for phenylacetaldehyde, 2,6-dimethyl-5-heptenal, linalool, and trans-4-decenal, respectively. Phenylacetaldehyde formed mixtures of lamellar and cubic phases. Linalool, 2,6-dimethyl-5-heptenal, and trans-4-decenal induced structural shift from lamellar directly to H(II) mesophase, remaining stable at room temperature. Lattice parameters were found to increase with water content and to decrease with temperature and/or food volatile content. trans-4-Decenal produces more stable H(II) mesophase compared to linalool-loaded mesophase. At 40-60 °C, depending on the chemical structure and on the solubilization location of the food volatile compounds, the H(II) mesophase transforms to isotropic micellar phase, facilitating the release of the food volatile compounds. Molecular interactions suggest the existence of two consecutive stages in the solubilization process.     

Prevalence and antimicrobial resistance of MRSA across different pig age groups in an intensive pig production system in Australia

This observational study aimed to determine MRSA prevalence using strain‐specific real‐time PCR at the pig level, stratified by age groupings, within a pig enterprise. A total of 658 samples were collected from individual pigs (n = 618) and the piggery environment (n = 40), distributed amongst five different pig age groups. Presumptive MRSA isolates were confirmed by the presence of mecA, and MALDI‐TOF was performed for species verification. All isolates were tested against 18 different antimicrobials. MRSA was isolated from 75.2% (95% CI 71.8–78.6) of samples collected from pigs, and 71% of the MRSA isolates from this source were identified as community‐associated (CA)‐MRSA ST93, while the remainder were livestock‐associated (LA)‐MRSA ST398. Amongst environmental isolates, 80% (CI 64.3–95.7) were ST93 and the remainder ST398. All MRSA isolates from pigs and the environment were susceptible to ciprofloxacin, gentamicin, linezolid, mupirocin, rifampicin, sulfamethoxazole–trimethoprim, teicoplanin and vancomycin. Phenotypic rates of resistance were penicillin (100%), clindamycin (97.6%), erythromycin (96.3%), ceftiofur (93.7%), chloramphenicol (81.2%), tetracycline (63.1%) and amoxicillin–clavulanate (63.9%). A low prevalence of resistance (9.2%) was observed against neomycin and quinupristin–dalfopristin. The probability of MRSA carriage in dry sows (42.2%) was found to be significantly lower (p < .001) when compared to other age groups: farrowing sows (76.8%, RR1.82), weaners (97.8%, RR 2.32), growers (94.2%, RR 2.23) and finishers (98.3%, RR 2.33). Amongst different production age groups, a significant difference was also found in antimicrobial resistance for amoxicillin–clavulanate, neomycin, chloramphenicol and tetracycline. Using the RT‐PCR assay adopted in this study, filtering of highly prevalent ST93 and non‐ST93 isolates was performed at high throughput and low cost. In conclusion, this study found that weaner pigs presented a higher risk for CA‐MRSA and antimicrobial resistance compared to other age groups. These findings have major implications for how investigations of MRSA outbreaks should be approached under the One‐Health context.