Bioinformatically mined simple sequence repeats in UniGene of Citrus sinensis

Characterization of microsatellites is extremely important for the development of molecular markers. Here, we present the detection and abundance of microsatellites or simple sequence repeats (SSRs) in UniGene sequences of Citrus sinensis. A total of 427 SSRs were mined in 8786 UniGene sequences downloaded from National Center for Biotechnology Information (NCBI). Depending on the repeat units, the length of SSRs ranged from 14 to 21 for mono-, 14 to 48 for di-, 18 to 48 for tri-, 24 to 40 for tetra- and 42 bp for hexa-nucleotide repeats. Average density of SSRs (1SSR/12.92 kb of 5518.71 kb sequences mined) suggests that only 4.43% of sequences contained SSRs. Di-nucleotide repeats were most frequent repeat type (49.41%) followed by tri-nucleotide repeats (41.45%). An attempt was made to design primer pairs for 427 identified SSRs but these were found only for 216 sequences. The positions of SSRs with respect to open reading frame (ORF) detected and annotation of sequences containing SSRs were also carried out to assign function to each of the sequences.     

Molecular characterization of the incitant of cowpea bacterial blight and pustule, Xanthomonas campestris pv. vignicola

Strains of Xanthomonas campestris pv. vignicola (Xcv), isolated from cowpea leaves with blight or minute pustules and collected from various geographic areas, were selected on the basis of pathological and physiological features. All strains were analyzed for genotypic markers by two methods: ribotyping with EcoRI endonuclease, and RFLP analysis with a plasmid probe (pthB) containing a gene required for pathogenicity from Xanthomonas campestris pv. manihotis. Ribotyping revealed a unique pattern for all the strains that corresponded to the previously described ribotype rRNA7. Based on polymorphism detected by pthB among Xcv strains, nine haplotypes were defined. The observed genetic variation was independent of the geographic origin of the strains and of pathogenic variation. Some haplotypes were widely distributed, whereas others were localized. In some cases, we could differentiate strains isolated from blight symptoms and pustules according to haplotypic composition. However, in most cases, no significant differences were observed. Our results and the previous pathogenic and biochemical characterizations suggest that the strains isolated from leaves with blight symptoms or minute pustules belong to the same pathovar. We provide information on pathogen diversity that can be used to identify and characterize resistant germplasm.     

Effect of tester on combining ability estimates of maize germplasm complexes

Eight maize complexes and varieties representing high and low yield levels were tested for their suitability as top cross testers by comparing the performance of the crosses in relation to the combining ability of the parents estimated by diallel analysis. The discriminating ability of the testers was compared by Schumann and Bradley test. In both cases the results clearly showed that the low performing testers were better and more reliable than the high performing complexes. The utility of per se performance as an indication of general combining ability of the complexes has been discussed.     

Assessment of clonal fidelity of micropropagated gerbera plants by ISSR markers

True-to-type clonal fidelity is one of the most important pre-requisites in micropropagation of crop species. Genetic fidelity of in vitro raised 45 plants of gerbera (Gerbera jamesonii Bolus) derived from three different explants, viz., capitulum, leaf and shoot tips, was assessed by 32 ISSR markers, for their genetic stability. Out of 32 ISSR markers, 15 markers produced clear, distinct and scorable bands with an average of 5.47 bands per marker. The markers designed from AG motif amplified more number of bands. The markers anchored at 3′ ends produced high number of consistent bands than unanchored markers. Fifteen ISSR markers generated a total of 3773 bands, out of which 3770 were monomorphic among all the clones. The Jaccard's similarity coefficient revealed that out of 45 clones derived from different explants, 44 were grouped into a single large cluster alongwith the mother plant with a similarity coefficient value of 1.00, whereas one clone (C38) remained ungrouped. The clones derived from capitulum and shoot tip explants did not show any genetic variation, whereas, one of the leaf-derived clones exhibited some degree of variation.     

An outbreak of gizzard erosion and ulceration in chicks in Zambia

An outbreak of gizzard erosion and ulceration in broilers in Zambia is described. Approximately 100,000 chickens in the age group of 2-9 weeks were affected. Mortality ranged from 5 to 30%. In a majority of cases, crops, oesophaguses and gizzards were engorged with dark brown to black watery material. Lesions were mainly in the gizzard comprising erosions and ulcers. High levels of fish meal in the ration is indicated as a causative factor.     

Reclamation of saline‐sodic soil under a rice–wheat system by horizontal surface flushing

Saline sodic soil with a high content of soluble carbonates is one of the important agricultural soils on the Central Indo‐Gangetic plains and elsewhere. Conventional reclamation procedures using gypsum application followed by vertical leaching (GC) is uneconomic; high ECe and precipitation of applied gypsum, reacting with soluble carbonates, reduce the efficacy of gypsum in these soils. This paper reports results from a project designed to evaluate reclamation by irrigation of the ploughed soil and turning of soil with a power tiller followed by flushing of standing water after 24 h, a second flushing after 7 days and subsequent application of gypsum and vertical leaching (GF2). Average rice and wheat production after GF2 significantly increased (25 and 62%, respectively) over the conventional practice. Compared with conventional treatment, GF2 significantly reduced the ECe and SAR of the soil and improved physical properties such as ζ‐potential, dispersible clay content, water stable aggregates expressed as MWD, and saturated hydraulic conductivity. Split application of gypsum between flushing (GF1/2 and GF2/3) gave similar results to GF2 in terms of soil amelioration and crop production.     

Effect of Gypsum Application on Long Term Changes in Soil Properties and Crop Growth in Sodic Soils under Field Conditions

In a field study, conducted on farmer's waste sodic soils, Aquic Natrustalf, 12.5 t/ha gypsum was surface mixed. Effect of gypsum application on soil properties and crop yields of rice and wheat grown in succession was evaluated after one to five years of gypsum application. The results showed that soil pH, electrical conductivity, calcium carbonate and soil dispersion decreased, whereas organic carbon, hydraulic conductivity, water infiltration and storage increased considerably after five years of gypsum application. In the initial years the improvement in soil properties was more in the surface layers and extended to lower layers slowly in the following years. Average grain yields of rice and wheat in the first year were 4.2 and 1.8 t/ha, respectively. The yields further increased to 6.1 and 2.5 t/ha in the 5th year, but the yields were lower than the yields obtained in research experiment. Relationships between wheat grain yield and pH of 0–15 and 15–30 cm layers were established. Wheat yield reduced by 45 percent when pH of 0–15 cm layer increased from 9.0 to 9.5. The sodicity of sub soil was still too high to permit the cultivation of deep rooted crops even after five years of gypsum application. Normal crop production is possible in these sodic soils, given sufficient time to reduce the sub soil sodicity.     

Effect of bronchodilator and intravascular oxygen releaser on the course of Dictyocaulus filaria infection in lambs

The effect of a bronchodilator (or ciprenaline sulphate) and intravascular oxygen releaser (sodium dihydrogen orthophosphate) on the host in experimental Dictyocaulus filaria infection was studied. Fifteen male lambs of Dorset-Muzaffarnagri breed, aged 4-6 months, were divided into four groups of four (infected bronchodilator), four (infected i.v. O2 releaser), four (infected untreated controls) and three (uninfected controls). The administration of i.v. O2 releaser helped in increasing the length of useful patency, estimated total larval production and survival rate of D. filaria producer lambs. The administration of I.V. O2 releaser and bronchodilator helped in efficiently restoring the altered values of blood pH, haemoglobin, packed cell volume, erythrocyte sedimentation rate and osmotic fragility of erythrocytes to near normal levels. However, the blood clotting time and level of lactate dehydrogenase activity remained altered and followed a course typical of ovine dictyocauliosis.     

Immune response of chicks to oral vaccination against Newcastle disease and fowl pox

The humoral immune response and immunity conferred in chicks were compared following separate and combined oral vaccination with F strain of Newcastle disease virus (NDV) and HP1 strain of fowl pox virus. The haemagglutination inhibition (HI) antibody titre against NDV and passive haemagglutination (PHA) antibody titre against fowl pox virus were comparable in two respective groups. The serum IgG concentration increased significantly after the second vaccination in all the groups. The NDV vaccine induced significantly higher IgG production as compared to fowl pox virus vaccine. There was no significant difference in serum IgG concentration produced by combined vaccine and separate F strain vaccine. The protection afforded by combined and separate vaccinations did not vary significantly against challenge with virulent strains of NDV and fowl pox virus at different stages.     

Interaction between Eimeria uzura infection and aflatoxicosis in Japanese quail (Coturnix coturnix japonica)

The clinical signs and gross lesions caused by Eimeria uzura (10(5) oocysts) in Japanese quail (Coturnix coturnix japonica) exhibited little or no influence in the face of intercurrent dietary aflatoxicosis (1 p.p.m. of aflatoxin B1 from Day 0 to 55). Similarly, no significant differences in the mucosal morphology of the intestine were evident histologically between the two groups of Japanese quail. The nervous signs of ataxia, leg weakness, incoordination of movement, torticollis and terminal opisthotonos were toxin-induced manifestations. In the aflatoxic quail, hypoplastic changes and selective depletion of lymphocytes were more prominent in the bursa of fabricius. Increased relative mean weights of liver, kidney, spleen, crop, proventriculus and gizzard were observed in birds due to aflatoxin sensitivity. The combination of E. uzura infection and aflatoxicosis in Japanese quail may cause significant weight loss, and increased oocyst production and reproductive potential.