Ephemeral-habitat colonization and neotropical species richness of <Emphasis Type="Italic">Caenorhabditis</Emphasis> nematodes

Background

The drivers of species co-existence in local communities are especially enigmatic for assemblages of morphologically cryptic species. Here we characterize the colonization dynamics and abundance of nine species of Caenorhabditis nematodes in neotropical French Guiana, the most speciose known assemblage of this genus, with resource use overlap and notoriously similar external morphology despite deep genomic divergence.

Methods

To characterize the dynamics and specificity of colonization and exploitation of ephemeral resource patches, we conducted manipulative field experiments and the largest sampling effort to date for Caenorhabditis outside of Europe. This effort provides the first in-depth quantitative analysis of substrate specificity for Caenorhabditis in natural, unperturbed habitats.

Results

We amassed a total of 626 strain isolates from nine species of Caenorhabditis among 2865 substrate samples. With the two new species described here (C. astrocarya and C. dolens), we estimate that our sampling procedures will discover few additional species of these microbivorous animals in this tropical rainforest system. We demonstrate experimentally that the two most prevalent species (C. nouraguensis and C. tropicalis) rapidly colonize fresh resource patches, whereas at least one rarer species shows specialist micro-habitat fidelity.

Conclusion

Despite the potential to colonize rapidly, these ephemeral patchy resources of rotting fruits and flowers are likely to often remain uncolonized by Caenorhabditis prior to their complete decay, implying dispersal-limited resource exploitation. We hypothesize that a combination of rapid colonization, high ephemerality of resource patches, and species heterogeneity in degree of specialization on micro-habitats and life histories enables a dynamic co-existence of so many morphologically cryptic species of Caenorhabditis.

     

Measuring moisture content profiles in a board during drying: a polychromatic X-ray system interfaced with a vacuum/pressure laboratory kiln

A standard X-ray source and an energy-sensitive detector were placed on both sides of a wood dryer which operates over a wide range of drying conditions. The spectrometric X-ray intensities transmitted through the wood sample were related to the mass concentration of wood and water using a rigorous calculation needed in the case of a polychromatic X-ray beam. The source and the detector are carried by a motion controller in order to scan the sample at different drying times and determine the moisture content (MC) profile along the board thickness. Treatment on spectrometric data and the evolution of the MC profiles in a Norway spruce board (Picea abies) are presented in this work.     

The onset of the rainy season and farmers’ sowing strategy for pearl millet cultivation in Southwest Niger

A multi-year (2004-2009) field survey of on-farm sowing practices in 10 villages located in south-west Niger close to Niamey, is analysed to investigate the relationships (i) between rainfall and the sowing date of pearl millet and the risk of sowing failure, (ii) between sowing and meteorological/agro-climatic onset dates, (iii) between sowing/onset dates, and simulated and observed yield/biomass at the end of the season. Even if some villages sow without any synchronous or anterior rainfall, most parcels (73% out of the 1551 available cases) are sown during and just after a 2-day wet spell receiving at least 10 mm. In fact, there is a strong correlation (r = 0.82-0.95 depending on onset definition) between the spatial averages of onset and of sowing dates. Most of the failed sowings (≈22% of total sowings) are related to dry spells lasting at least 7 days after an initial 2-day wet spell receiving less than 10 mm. Simulations with the “Système d’Analyse Régionale des Risques Agronomiques - version Habillée” crop model show that the ideal sowing date, retrospectively computed as the one maximizing simulated yield, is on average about 6 days later than the observed one. Despite the large inter-village variance and the relatively weak inter-annual signal in onset dates and seasonal amounts, there is a tendency for weaker yields and especially weaker amounts of biomass for late onset. But crop simulations show that sowing very early, as for example during or just after the first wet spell when at least 90% of rainfall stations receive simultaneously at least 1 mm in two consecutive days (i.e. meteorological onset), does not necessarily maximize simulated yield because of the high risk of long-lasting post-onset dry spells. The farmers’ strategy, that is sowing their field during or just after the first significant wet spell, is combined with the use of photoperiodic varieties to provide the best-suited response to the temporal and spatial variability of onset of the rainy season.     

First report of the sexual stage of the flax pathogen Mycosphaerella linicola in France and its impact on pasmo epidemiology

We performed a 3-year field survey in France to characterize the dynamics of sexual reproduction in Mycosphaerella linicola, the causal agent of pasmo, during the interepidemic period. Cohorts of fruiting bodies were sampled from linseed straw during the autumn and winter and carefully observed, focusing on pseudothecia, asci, and ascospores. A sequence of experimental steps corresponding to Koch's postulates confirmed in July 2014, for the first time in France and continental Europe, the widespread presence of the sexual stage of M. linicola in plant host tissues. The developmental dynamics of pseudothecia on straw, expressed as the change over time in the percentage of mature pseudothecia, was similar in all three years. Pseudothecia appeared in late summer, with peak maturity reached in October. A temporal shift, thought to be due to early autumn rainfall, was highlighted in one of the three years. These observations suggest that sexual reproduction plays a significant role in the epidemiology of pasmo in France. A resurgence of M. linicola infections in spring flax is thought to have occurred in recent years, due to the increase in the area under flax. The presence of the sexual stage of this pathogen probably increased the quantitative impact of residues of winter linseed (used for oil) and flax straw (left on the soil for retting and used for fibres) as an interepidemic “brown bridge”. This case study highlights how certain parts of a disease cycle, in this case the sexual phase, can become crucial due to changes in production conditions.     

In Vitro Chemopreventive Potential of Phlorotannins-Rich Extract from Brown Algae by Inhibition of Benzo[a]pyrene-Induced P2X7 Activation and Toxic Effects

Phlorotannins are polyphenols occurring exclusively in some species of brown algae, known for numerous biological activities, e.g., antioxidant, antiproliferative, antidiabetic, and antiallergic properties. Their effects on the response of human lung cells to benzo[a]pyrene (B[a]P) has not been characterized. Our objective was to in vitro evaluate the effects of a phlorotannin-rich extract obtained from the brown algae Ascophyllum nodosum and Fucus vesiculosus on B[a]P cytotoxic effects. The A549 cell line was incubated with B[a]P for 48 and 72 h in the presence or absence of the brown algae extract. Cytochrome P450 activity, activation of P2X7 receptor, F-actin disorganization, and loss of E-cadherin expression were assessed using microplate cytometry and fluorescence microscopy. Relative to control, incubation with the brown algae extract was associated with lower B[a]P-induced CYP1 activity, lower P2X7 receptor activation, and lower reactive oxygen species production. The brown algae extract inhibited the alterations of F-actin arrangement and the downregulation of E-cadherin expression. We identified a phlorotannins-rich extract that could be deeper investigated as a cancer chemopreventive agent to block B[a]P-mediated carcinogenesis.     

Effect of plant extracts and an essential oil on the control of brown spot disease, tillering, number of panicles and yield increase in rice

The effects of essential oils (EO), cold water (CWE), hot water (HWE) and ethanol (ETHE) extracts of Callistemon citrinus L. and Cymbopogon citratus (DC) Stapf on the radial growth of Alternaria padwickii (Ganguly) M.B. Ellis and Bipolaris oryzae (Breda de Haan) Shoemaker, the control of brown spot disease, the tillering, the number of panicles and the yield increase in rice were evaluated under laboratory and field conditions. In vitro, the growth of both fungi was completely inhibited by the EO of C. citrinus and C. citratus at 4,520 μg/ml and 452 μg/ml, respectively. For solvent extracts, the ETHE of C. citrinus was the most active and inhibited 80–85 % of the fungal growth followed by the CWE of C. citratus with 77 % and 36 % diameter reduction against B. oryzae and A. padwickii, respectively at 10 000 μg/ml. Under laboratory conditions, seed treatment with the EO of C. citrinus reduced the incidence of B. oryzae in seeds by 85–100 % compared to the non-treated controls. Similarly, the seed treatment increased the germination of an irrigated rice cultivar by 10.6 %, whereas the percentage of germinated seeds of upland rice was not significantly affected. The highest germination (85–94 %) was found in the non-treated and treated samples with a low incidence (0–4 %) of B. oryzae. Under field conditions, the combined use of the essential oil of C. citrinus as a seed treatment and spraying the plants with 2 % ethanol followed by 2 % (w/v) aqueous extracts of C. citrinus or C. citratus increased the emergence, tillering, panicles/plant and the grain yield by 25–55 % of the irrigated rice. In addition, the brown spot severity was reduced by 36–42 %. For the upland rice, the treatments led to similar results with the grain yield increase of 54–137 % and 20–80 % reduction in the brown spot severity. From our results, we concluded that the EO and solvent extracts of C. citrinus and C. citratus have potential as control agents against brown spot and other seed-borne fungal diseases in rice under both conventional and organic farming.