Alphavirus infections in salmonids--a review

The first alphavirus to be isolated from fish was recorded in 1995 with the isolation of salmon pancreas disease virus from Atlantic salmon, Salmo salar L., in Ireland. Subsequently, the closely related sleeping disease virus was isolated from rainbow trout, Oncorhynchus mykiss (Walbaum), in France. More recently Norwegian salmonid alphavirus (SAV) has been isolated from marine phase production of Atlantic salmon and rainbow trout in Norway. These three viruses are closely related and are now considered to represent three subtypes of SAV, a new member of the genus Alphavirus within the family Togaviridae. SAVs are recognized as serious pathogens of farmed Atlantic salmon and rainbow trout in Europe. This paper aims to draw together both historical and current knowledge of the diseases caused by SAVs, the viruses, their diagnosis and control, and to discuss the differential diagnosis of similar pathologies seen in cardiomyopathy syndrome and heart and skeletal muscle inflammation of Atlantic salmon.     

Non‐salmonids in a salmonid fishway: what do 50 years of data tell us about past and future fish passage?

Abstract  Salmonid fishways have been used in many countries for non-salmonid fishes, including Australia, but generally with poor results. Trapping the entrance and exit of a 1:9 gradient salmonid fishway on the Murray River confirmed very poor passage of native fish, with <1% of the most abundant species ascending. Fifty years of fish passage monitoring showed the numbers of three native species declining by 95–100% and non-native fish becoming dominant. Fishways are now being designed for native fish and being quantitatively assessed, but daily flow management also needs to be addressed. The ecological model for passage of potamodromous fishes has changed from passing adults of a few species to one that incorporates the whole fish community, specifically: immature fish of large-bodied species that dominate numbers migrating upstream; a diverse range of movement strategies; and small-bodied species, crustaceans and low numbers of less-mobile species.     

Movements by wild brown trout in a boreal river: response to habitat and flow contrasts

Abstract  Radio transmitters were implanted in wild brown trout, Salmo trutta L., in the River Måna at low summer water flows ( n  = 18), higher flow in summer ( n  =   20), and variable, peaking flows in autumn ( n  =   20), and tracked two to four times day and night for 4–5 weeks. Individuals were caught and released in a 4-km uniformly channelised section, and in a 4-km natural diverse river section. Substantial individual variation in home range and total movement (924–85 818 m² and 295–7014 m) suggested flexibility to adapt to local environmental conditions. Fish were stationary most of the time (median movement 0 m), but some individuals undertook few and apparently sporadic longer movements, sometimes involving shifts in home range. No consistent diurnal pattern in movements was found. Trout in the uniform habitat section appeared to have larger home ranges and moved more than trout in the natural section. Differences were, however, not statistically significant in most comparisons, due to large individual variation. Similarly, larger home ranges and movements between trials related to higher flow were found, but differences were generally not significant. No consistent effects of sudden, extreme peaking flows on area use or movements by the brown trout were observed.     

Short-term stress and mortality of juvenile school prawns, Metapenaeus macleayi, discarded from seines and trawls

Abstract  Two experiments were carried out to assess the short-term impacts to juvenile school prawns, Metapenaeus macleayi (Haswell) discarded from commercial seining and trawling in New South Wales, Australia, and the potential utility of modifications to operational and/or onboard handling practices designed to improve survival. For both gears, discards were handled according to two general categories of treatment (termed mild and extreme) chosen to represent the plausible limits of severity during existing commercial operations. A total of 600 trawled and 480 seined school prawns (from both treatments), along with appropriate numbers of controls (previously collected and housed in acclimation tanks), were placed into cages (in groups of 10). Subsets of each of these groups were then destructively sampled over periods of up to 5 days and examined for their mortality and physiological response (measured as levels of l -lactate in the haemolymph). In both experiments, the temporal mortalities in the treatment groups ranged between 0% and 15% and, for the most part, were not significantly different to controls. Prawns in the treatment groups had similar, significantly elevated levels of l -lactate approximately 40 min after being caught, but these returned to levels approaching baseline estimates within 48 h. Under the conditions examined, juvenile school prawns appear capable of withstanding a range of stressors associated with being discarded from active gears, and their fate is not greatly influenced by the duration of gear deployment and subsequent air exposure. However, further work is required to quantify other sources of unaccounted fishing mortality and, ultimately, the impacts that discarding has on stocks.     

Molecular evidence for cosmopolitan distribution of platyhelminth parasites of tunas (Thunnus spp.)

Global distribution of platyhelminth parasites and their host specificities are not well known. Our hypothesis was that platyhelminth parasites of large pelagic fishes are common around the world. We analysed molecular variation in three different taxa of platyhelminth parasites infecting four species of tunas: yellowfin tuna (Thunnus albacares, Scombridae) from Western Australia, southern bluefin tuna (Thunnus maccoyii, Scombridae) from South Australia, Pacific bluefin tuna (Thunnus orientalis, Scombridae) from Pacific Mexico and northern bluefin tuna (T. thynnus, Scombridae) from two localities in the Mediterranean (Spain and Croatia). Comparisons of ITS2 and partial 28S rDNA demonstrated two congeneric species of blood flukes (Digenea: Sanguinicolidae) from multiple hosts and localities: Cardicola forsteri from southern bluefin and northern bluefin tunas, and Cardicola sp. from Pacific bluefin and northern bluefin tunas; and a gill fluke, Hexostoma thynni (Polyopisthocotylea: Hexostomatidae), from yellowfin, southern bluefin and northern bluefin tunas. Partial 28S rDNA indicates that a second type of fluke on the gills, Capsala sp. (Monopisthocotylea: Capsalidae), occurs on both southern bluefin and Pacific bluefin tunas. This appears to be the first report of conspecific platyhelminth parasites of teleosts with a wide‐ranging geographical distribution that has been confirmed through molecular approaches. Given the brevity of the free‐living larval stage of both taxa of flukes on the gills (H. thynni and Capsala sp.), we conclude that the only feasible hypothesis for the cosmopolitan distribution of these flatworms is migrations of host tunas. Host migration also seems likely to be responsible for the widespread occurrence of the two species of blood flukes (Cardicola spp.), although it is also possible that these were translocated recently by the spread of infected intermediate hosts.     

Model uncertainty in the ecosystem approach to fisheries

Fisheries scientists habitually consider uncertainty in parameter values, but often neglect uncertainty about model structure, an issue of increasing importance as ecosystem models are devised to support the move to an ecosystem approach to fisheries (EAF). This paper sets out pragmatic approaches with which to account for uncertainties in model structure and we review current ways of dealing with this issue in fisheries and other disciplines. All involve considering a set of alternative models representing different structural assumptions, but differ in how those models are used. The models can be asked to identify bounds on possible outcomes, find management actions that will perform adequately irrespective of the true model, find management actions that best achieve one or more objectives given weights assigned to each model, or formalize hypotheses for evaluation through experimentation. Data availability is likely to limit the use of approaches that involve weighting alternative models in an ecosystem setting, and the cost of experimentation is likely to limit its use. Practical implementation of an EAF should therefore be based on management approaches that acknowledge the uncertainty inherent in model predictions and are robust to it. Model results must be presented in ways that represent the risks and trade‐offs associated with alternative actions and the degree of uncertainty in predictions. This presentation should not disguise the fact that, in many cases, estimates of model uncertainty may be based on subjective criteria. The problem of model uncertainty is far from unique to fisheries, and a dialogue among fisheries modellers and modellers from other scientific communities will therefore be helpful.