A new species of the genus Xiphinema Cobb 1913 (Nematoda: Longidoridae) from north and northwest Iran

European Journal of Plant Pathology - Five populations of a new dagger nematode species were recovered from natural grasslands and forests of north and northwest Iran, and described based upon...     

Correction to: A new species of the genus Xiphinema Cobb 1913 (Nematoda: Longidoridae) from north and Northwest Iran

European Journal of Plant Pathology - A Correction to this paper has been published: https://doi.org/ https://doi.org/10.1007/s10658-021-02272-1     

Molecular characterization of the surface glycoprotein genes of highly pathogenic H5N1 avian influenza viruses detected in Iran in 2011

Highly pathogenic avian influenza (HPAI) H5N1 virus is causing the death of a large number of wild birds and poultry. HPAI H5N1 was reported in the north of Iran in 2011. In this study, two A/Chicken/Iran/271/2011 and A/Duck/Iran/178/2011 viruses were genetically characterized by sequence analysis of Hemagglutinin (HA) and Neuraminidase (NA) genes. Phylogenetic analysis revealed that these viruses were different from previous Iranian isolates (Clade 2.2) and belonged to the subclade 2.3.2.1. The results showed that the detected viruses are almost identical to each other and closely related to HPAI H5N1 strains isolated in Mongolia in 2010. Based on the amino acid sequence analysis, these viruses at their HA cleavage sites contained the multibasic amino acid motif PQRERRRK-R/GLF lacking a lysine residue compared with the previous reports of the same motif. There is also a 20-amino acid deletion (resides 49–69) in the NA stalk similar to other viruses isolated after 2000. It seems that introduction of HPAI H5N1 to Iran might have happened by wild birds from Mongolian origin virus.     

Sorption and Binding Mechanism of Polysaccharide Cleaving Soil Enzymes by Clay Minerals

Analyses of the sorption of five polysaccharide cleaving soil enzymes by Na-homoionic clay minerals revealed a dependency on the cation exchange capacity of the clays: montmorillonite displayed the highest sorbing capacity, followed by palygorskite and kaolinite. Variation of the experimental conditions using cellulase and montmorillonite showed a maximum sorption at pH 4.8 and temperatures between 25°C and 45°C. Urea had no effect on the sorption, whereas humic acids and acetylation of enzymes lead to a decrease. No sorption was observed in the presence of bivalent cations. A discussion of possible binding mechanisms lead to the conclusion that interactions can be ascribed to van der Waals forces rather than to ionic reactions. It is assumed that the enzymes penetrate into the interlayers of montmorillonite, but not of palygorskite and kaolinite.     

Standardization of the outbred BALB/c mice as a suitable animal model for <Emphasis Type="BoldItalic">Besnoitia caprae</Emphasis> studies

The Apicomplexan parasite Besnoitia caprae infects wild and domestic goats. Knowledge on Besnoitia caprae specially an optimized animal model is sparse. Experimental infections with tachyzoites of BC-Pars obtained from BALB/c mice were conducted in outbred mice to determine the infectivity and LD50 of Besnoitia caprae. Six groups of five mice were intraperitoneally infected with 12.5 × 10³, 25 × 10³, 5 × 10⁴, 1 × 10⁵ and 2 × 10⁵ tachyzoites and a control inoculum of DMEM, respectively. Although morbidity and mortality were observed in all groups, two mice in the 12.5 × 10³ group showed alopecia and skin lesions on 60 days post-infection (DPI). Histopathological and molecular examination of skins confirmed B. caprae infection. The LD₅₀ was calculated as 25 × 10^3.2 tachyzoites per mouse. The results indicate that outbred BALB/c mice can be used as a suitable model of besnoitiosis and to screen candidate treatments and to test the efficacy of vaccines for besnoitiosis.     

A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity

Obesity is a serious international health problem that increases the risk of several common diseases. The genetic factors predisposing to obesity are poorly understood. A genome-wide search for type 2 diabetes-susceptibility genes identified a common variant in the FTO (fat mass and obesity associated) gene that predisposes to diabetes through an effect on body mass index (BMI). An additive association of the variant with BMI was replicated in 13 cohorts with 38,759 participants. The 16% of adults who are homozygous for the risk allele weighed about 3 kilograms more and had 1.67-fold increased odds of obesity when compared with those not inheriting a risk allele. This association was observed from age 7 years upward and reflects a specific increase in fat mass.     

Small-scale fisheries and local food systems: Transformations,threats and opportunities

Fish from marine and inland capture fisheries is an important food that contributes significantly to diets and health, but their contribution is somewhat overlooked in food security and poverty-related policies. Given the current numbers of malnourished people globally, there is a pressing need to consider how to better realize the potential of fish in food systems that can address malnourishment. To do so, we re-examine the fisheries literature from the perspective of food systems. Starting with nutritional needs and considering how these may be met through local food systems reveals an ongoing transformation that has implications for small-scale fisheries, as increasingly become part of globalized food systems. We describe the factors that can change the nature of production, mediate access to fish and the distribution of benefits that can lead to impoverishment. This emphasizes the governance challenges that lie at the heart of complex, contested and increasingly globalized food systems, in which actors interact to shape the systems, determining who benefits and how. We draw attention to critical issues of access, power and the values and norms that underpin efforts to manage and transform fisheries, exposing the unequal struggle to secure access that small-scale fishers and poor people must endure. We suggest a vital challenge for fisheries management is to engage with this struggle and develop policies and management measures that would enable fisheries to make positive contributions to food systems and nutritional security, while meeting global sustainable development objectives.     

Genotype×tillage interaction and the performance of winter bread wheat genotypes in temperate and cold dryland conditions

Growing concerns for food security and the alleviation of hunger necessitate knowledge-based crop management technologies for sustainable crop production. In this study, 13 winter bread wheat genotypes (old, relatively old, modern, and breeding lines) were evaluated under three different tillage systems, i.e., conventional tillage (CT, full tillage with residue removed), reduced tillage (RT, chisel tillage with residue retained) and no-tillage (NT, no-tillage with residue retained on the soil surface) in farmer's fields under rainfed conditions using strip-plot arrangements in a randomized complete block design with three replications in the west of Iran (Kamyaran and Hosseinabad locations) over two cropping seasons (2018–2019 and 2019–2020).The main objectives were to investigate the effects of tillage systems and growing conditions on the agronomic characteristics, grain yield and stability performance of rainfed winter bread wheat genotypes.Significant (P<0.01) genotype×tillage system interaction effects on grain yield and agronomic traits suggested that the genotypes responded differently to the different tillage systems. The number of grains per spike and plant height were positively (P<0.0) associated with grain yield under the NT system, so they may be considered as targeted traits for future wheat breeding. Using statistical models, the modern cultivars (“Sadra” and “Baran”) were identified as high yielding and showed yield stability across the different tillage systems. As per each tillage system, genotype “Sadra” followed by “Zargana-6//Dari 1-7 Sabalan” exhibited higher adaption to CT; while cultivars “Jam” and “Azar2” showed better performance under the RT system; and cultivars “Varan” and “Baran” tended to have better performance expression in the NT condition.The increased grain yields achieved in combination with lower costs and greater profits from conservation agriculture suggest that adapted cultivar and NT systems should be evaluated and promoted more widely to farmers in the west of Iran as an attractive package of crop management technologies.In conclusion, variations in the performance of genotypes and the significant genotype×tillage system interaction effects on grain yield and some agronomic traits assessed in this study suggest that the development and selection of cultivars adapted to the NT system should be considered and included in the strategies and objectives of winter wheat breeding programs for the temperate and cold dryland conditions of Iran.     

Microbial community dynamics during composting of animal manures contaminated with arsenic,copper,and oxytetracycline

Effects of the heavy metal copper(Cu), the metalloid arsenic(As), and the antibiotic oxytetracycline(OTC) on bacterial community structure and diversity during cow and pig manure composting were investigated. Eight treatments were applied, four to each manure type, namely cow manure with:(1) no additives(control),(2) addition of heavy metal and metalloid,(3) addition of OTC and(4) addition of OTC with heavy metal and metalloid; and pig manure with:(5) no additives(control),(6) addition of heavy metal and metalloid,(7) addition of OTC and(8) addition of OTC with heavy metal and metalloid. After 35 days of composting, according to the alpha diversity indices, the combination treatment(OTC with heavy metal and metalloid) in pig manure was less harmful to microbial diversity than the control or heavy metal and metalloid treatments. In cow manure, the treatment with heavy metal and metalloid was the most harmful to the microbial community, followed by the combination and OTC treatments. The OTC and combination treatments had negative effects on the relative abundance of microbes in cow manure composts. The dominant phyla in both manure composts included Actinobacteria, Bacteroidetes, Firmicutes, and Proteobacteria. The microbial diversity relative abundance transformation was dependent on the composting time. Redundancy analysis(RDA) revealed that environmental parameters had the most influence on the bacterial communities. In conclusion, the composting process is the most sustainable technology for reducing heavy metal and metalloid impacts and antibiotic contamination in cow and pig manure. The physicochemical property variations in the manures had a significant effect on the microbial community during the composting process. This study provides an improved understanding of bacterial community composition and its changes during the composting process.