State-of-the-art review of goat TSE in the European Union, with special emphasis on PRNP genetics and epidemiology

Scrapie is a fatal, neurodegenerative disease of sheep and goats. It is also the earliest known member in the family of diseases classified as transmissible spongiform encephalopathies (TSE) or prion diseases, which includes Creutzfeldt-Jakob disease in humans, bovine spongiform encephalopathy (BSE), and chronic wasting disease in cervids. The recent revelation of naturally occurring BSE in a goat has brought the issue of TSE in goats to the attention of the public. In contrast to scrapie, BSE presents a proven risk to humans. The risk of goat BSE, however, is difficult to evaluate, as our knowledge of TSE in goats is limited. Natural caprine scrapie has been discovered throughout Europe, with reported cases generally being greatest in countries with the highest goat populations. As with sheep scrapie, susceptibility and incubation period duration of goat scrapie are most likely controlled by the prion protein (PrP) gene (PRNP). Like the PRNP of sheep, the caprine PRNP shows significantly greater variability than that of cattle and humans. Although PRNP variability in goats differs from that observed in sheep, the two species share several identical alleles. Moreover, while the ARR allele associated with enhancing resistance in sheep is not present in the goat PRNP, there is evidence for the existence of other PrP variants related to resistance. This review presents the current knowledge of the epidemiology of caprine scrapie within the major European goat populations, and compiles the current data on genetic variability of PRNP.     

Cradle-to-farm gate life cycle assessment in perennial energy crops

Life cycle assessment (LCA) can be an objective, strategic and immediate criteria in determining, case-by-case, the most suitable crop for energy. In this study, a cradle-to-farm gate LCA study was performed in 4 perennial energy crops and then compared to the environmental impacts of a conventional wheat–maize rotation. The functional units energy and hectare were used for ranking the crops. The results showed clear and constant environmental benefits, on average 50% lower impacts, by substituting the conventional rotation with perennial crops. Among the latter, little differences were found on hectare basis, while the differences were strictly dependent on biomass yield, on energy basis. Giant reed, the most productive crop, showed at this regard the best performance, while cynara resulted in the lowest ecological benefits. A similar trend was also registered as concern the energy gain and efficiency that ranged from 75 (cynara) to 349 (giant reed) GJ ha⁻¹, and from 7 to 30 (same order), respectively. On hectare basis, switchgrass achieved better results in six categories out of nine, and especially, it was from 27% to 32% less impacting than the other perennials on marine water ecotoxicity, which resulted in the clearly most affected category after normalisation on average European inhabitants. Weighting is not allowed for public comparison (ISO 14042), yet it can be helpful for some overall indications and conclusive comments. Comparing giant reed and switchgrass under different weighting sets, it emerged that resource depletion was the main discriminator for crop choice. Evenly weighting human health (HH), resource depletion (RD) and ecosystem quality (EQ) categories made the preference toward switchgrass or giant reed very uncertain. Taking three different weighting sets with RD, HH and EQ having 50% of relative importance (25% was set for the remaining two categories), switchgrass appeared the best choice in two cases (i.e. HH = 50% and EQ = 50%) out of three. Therefore, the preference toward a specific energy crop will strongly depend on weighting sets that may considerably change in space and time.     

Geographical origin and drying methodology may affect the essential oil of Lippia alba (Mill) N.E. Brown

Lippia alba (Mill.) N.E. Brown, the ginger grass, is a medicinal and aromatic plant widely used in Latin America. In this work the effect of the geographical origin and different drying methodologies on L. alba leaves production, essential oil content and composition were evaluated. Field experiments were conducted in three different municipalities (Amargosa, Cruz das Almas and Santo Antônio de Jesus) from Bahia region (Brazil) and two drying methodologies (traditional and artificial with controlled conditions) were assessed. Fresh and dried leaves essential oils were extracted by hydro-distillation and their volatiles were determined by gas chromatography.The geographical origin affected the mass production, essential oil content and both qualitative and quantitative fractions of their composition. Leaves from Cruz das Almas had higher yield in essential oil content. Overall, 26 oil constituents were identified. Carvone, germacrene D and limonene were the main oil constituents. The drying methodologies combined with the geographic origin influenced essential oil composition showing that L. alba constituents were influenced by post-harvest treatments. Some constituents were sensitive to both methods applied, while some enhanced their content like germacrene D.     

Studies on Methane Emissions from Pastoral Farming in New Zealand

The aim of this paper was to give a basic understanding of studies on methane emissions of New Zealand, as we know the agriculture of New Zealand is pastoral farming, most livestock animals are grazed in pasture, and quantities of methane were released from the digestive tract and animals excreta. In New Zealand some 50% greenhouse gases （GHG） sources are attributed to agriculture and one third is methane from livestock enteric formation. For many years, many researchers have been exploiting the techniques and methods to measure the emission of methane of New Zealand, further more studing the available options to alleviate the methane emissions. Their pioneering work and successful experiences including the determined methods and mitigation strategies are worth learning for scholars around the world. Some of their approaches were not only suitable for New Zealand grazed livestock, but for many other countries, even the animals are intensively bred in pen. The calorimeter/respiration chamber is the most exactly method in present, but it needs expensive equipments and skilled manipulators, so there are still some difficulty in applying this approach extensively in practice. Sulfur hexafluoride （SF6） trace technique is much adopted for grazed livestock evaluating the methane emission, though its veracity was doubted by some researchers, it is still a good option in present for studying the GHG emissions for grazing animals. By measuring the rumen volatile fatty acid （VFA） concentration to estimate the methane emission is a relatively simple approach, it is just only a rough evaluation, and it is unsuitable for exact study, but this method may be used in China for extensively raised ruminant. In present China, the ruminants are fed in an extensively managed state, the diversities of roughage and animals varieties caused difficult to exactly estimate the methane emission. So exploiting the available options is much important for constituting the exhaustive emission inventory. This review just maybe a good reference for researchers to carry out their studies in years and acquired great achievements in methane mitigation area. outline some practical techniques of New Zealand, those this field, after all New Zealand have been persisting many     

IMAGING DIAGNOSIS—ULTRASONOGRAPHIC APPEARANCE OF SKELETAL MUSCLE METASTASES IN A DOG WITH HEMANGIOSARCOMA

A 13‐year‐old spayed female German shepherd dog was presented for acute onset of lethargy, anorexia, and disseminated erythematous skin lesions. Thoracic radiographs and abdominal ultrasonographic findings were consistent with metastatic hemangiosarcoma. Multiple, ill‐defined, irregularly shaped hypoechoic nodules were also detected within the thoracic and abdominal wall. Hemangiosarcoma metastases to the skeletal muscle were confirmed based on histopathological examination. Multivisceral involvement was also confirmed by necropsy. Metastatic neoplasia should be considered as a differential diagnosis for dogs with ill‐defined, irregular, hypoechoic, intramuscular nodules.     

Metal accumulation in House Sparrow (Passer domesticus) from Thohoyandou,Limpopo province,South Africa

Studies on metal pollution (cadmium, cobalt, chromium, copper, manganese and nickel) in South African terrestrial environments are severely lacking. Due to being relatively unaffected by industrialisation, the Thohoyandou region may provide data on natural levels of metals for use as baseline data. The House Sparrow (Passer domesticus) was chosen as a bio-indicator of metal pollution due to its abundance, non-migratory lifestyle and close association with humans. The aims were to determine the viability of using feathers as a non-lethal bio-indicator tissue compared with muscle. Plume feathers, flight feathers and muscle tissue were analysed using ICP-OES techniques. Analyses of tissue metal concentrations identified the following trend: plume feather > flight feather > muscle tissue. Within the Thohoyandou region, Magondi, which was affected by anthropogenic activities at the time of sampling, had significantly higher concentrations (p ≤ 0.05) for each of the metals, indicating potential metal contamination from various sources. Alternatively, Makonde had the lowest metal concentrations and may be an important reference site for future comparative studies. The results showed that the House Sparrow can be used as a bio-indicator organism in South African terrestrial environments. The plume feathers indicate that they are a good non-lethal tissue for determining metal pollution levels on a temporal scale, indicating recent metal exposure.     

Resilience of European larch (<Emphasis Type="Italic">Larix decidua</Emphasis> Mill.) forests to wildfires in the western Alps

European larch is a dominant species in the subalpine belt of the western Alps. Despite recent increases in wildfire activity in this region, fire ecology of European larch is poorly understood compared to other larch species around the world. This study aims to assess whether European larch forests are resilient to fires, and to find out the factors that drive such resilience. We assessed the recovery of larch forests along a gradient of fire severity (low, moderate, high) based on the abundance and dominance of post-fire larch regeneration. We established 200 plots distributed among burned larch forests in nine wildfires that occurred between 1973 and 2007 in the western Alps. We included variables regarding topography, climate, fire severity, fire legacies, ground cover, grazing intensity, and time since fire. To evaluate potential drivers of larch recruitment, we applied generalized linear mixed models (GLMM) and random forests (RF). Larch regeneration was much more abundant and dominant in the moderate- and high-severity fire classes than in the low-severity class. More than half of the plots in the moderate- and high-severity classes were classified as resilient, i.e., post-fire larch regeneration was enough to recover a larch stand. GLMM and RF produced complementary results: fire severity and legacies, such as snags, canopy cover and distance to seed source, were crucial factors explaining post-fire larch recruitment. This study shows that fire has a positive effect on larch regeneration, and we conclude that European larch forests are highly resilient to mixed-severity fires in the western Alps.     

Tillage system affects fertilizer-induced nitrous oxide emissions

Since the development of effective N₂O mitigation options is a key challenge for future agricultural practice, we studied the interactive effect of tillage systems on fertilizer-derived N₂O emissions and the abundance of microbial communities involved in N₂O production and reduction. Soil samples from 0–10 cm and 10–20 cm depth of reduced tillage and ploughed plots were incubated with dairy slurry (SL) and manure compost (MC) in comparison with calcium ammonium nitrate (CAN) and an unfertilized control (ZERO) for 42 days. N₂O and CO₂ fluxes, ammonium, nitrate, dissolved organic C, and functional gene abundances (16S rRNA gene, nirK, nirS, nosZ, bacterial and archaeal amoA) were regularly monitored. Averaged across all soil samples, N₂O emissions decreased in the order CAN and SL (CAN?=?748.8?±?206.3, SL?=?489.4?±?107.2 μg kg^?1) followed by MC (284.2?±?67.3 μg kg^?1) and ZERO (29.1?±?5.9 μg kg^?1). Highest cumulative N₂O emissions were found in 10–20 cm of the reduced tilled soil in CAN and SL. N₂O fluxes were assigned to ammonium as source in CAN and SL and correlated positively to bacterial amoA abundances. Additionally, nosZ abundances correlated negatively to N₂O fluxes in the organic fertilizer treatments. Soils showed a gradient in soil organic C, 16S rRNA, nirK, and nosZ with greater amounts in the 0–10 than 10–20 cm layer. Abundances of bacterial and archaeal amoA were higher in reduced tilled soil compared to ploughed soils. The study highlights that tillage system induced biophysicochemical stratification impacts net N₂O emissions within the soil profile according to N and C species added during fertilization.     

Virulence-associated trimeric autotransporters of Haemophilus parasuis are antigenic proteins expressed in vivo

Glässer’s disease is a re-emerging swine disease characterized by a severe septicaemia. Vaccination has been widely used to control the disease, although there is a lack of extended cross-protection. Trimeric autotransporters, a family of surface exposed proteins implicated in host-pathogen interactions, are good vaccine candidates. Members of this family have been described in Haemophilus parasuis and designated as virulence-associated trimeric autotransporters (VtaA). In this work, we produced 15 recombinant VtaA passenger domains and looked for the presence of antibodies directed against them in immune sera by immunoblotting. After infection with a subclinical dose of H. parasuis Nagasaki, an IgG mediated antibody response against 6 (VtaA1, 5, 6, 8, 9 and 10) of the 13 VtaA of the Nagasaki strain was detected, indicating that they are expressed in vivo. IgA production against VtaA was detected in only one animal. VtaA were more likely to be late antigens when compared to early (Omp P5 and Omp P6) and late (YaeT) defined antigens. Antibody cross-reaction with two orthologs of Nagasaki’s VtaA5 and 6, VtaA15 and 16 of strain HP1319, was also detected. No antibodies against VtaA were detected in the sera of animals immunized with a bacterin of the Nagasaki strain, suggesting poor expression in the in vitro conditions used. Taken together, these results indicate that VtaA are good candidate immunogens that could be used to improve H. parasuis vaccines. However, their capacity to confer protective immunity needs to be further studied.