Genetic, morphological and cyanogen content evaluation of a new collection of Caribbean Lima bean (Phaseolus lunatus L.) landraces

Lima bean is a species cultivated broadly in the Americas and has been cultivated in the Caribbean for at least 500 years. In order to determine the genetic structure and diversity of Lima bean from the Caribbean, 50 landraces from Haiti, the Dominican Republic and Puerto Rico were collected and analyzed using 24 SSR markers. All landraces in this Caribbean collection were found to be of Middle-American descent. The genetic diversity (H_E) was highest in the landraces from Puerto Rico and lowest in Haitian landraces. The observed proportion of heterozygotes (H_O) was higher in the Haitian landraces and lowest in Puerto Rican landraces. Unweighted pair-group method with arithmetic averaging analysis showed that the landraces clustered into 3 clusters with all Haitian landraces grouping in one cluster. We also assessed the agro-morphological characteristics of the collection as well as the content of cyanogenic glucoside, linamarin, in leaves and dry seeds. Lima bean, which is a model crop for indirect plant defenses against herbivory, also possess linamarin as a source of direct plant defense. Upon tissue damage, linamarin is converted to toxic hydrogen cyanide. In our collection 44.6 % of the landraces had average seed HCN content ≤200 ppm which is the permitted level for Lima bean seed in the US. Our results also identified the landraces in this collection which have high linamarin levels in the leaves while having low levels in the seeds. Such landraces have the desirable combination of traits and will be the focus of our future plans for agronomic trait improvement though breeding.     

The importance of Guizotia abyssinica (niger) for sustainable food security in Ethiopia

Niger (noug; Guizotia abyssinica) is an economically important edible oilseed crop. This review sought to demonstrate the significance of niger for sustainable food security in Ethiopia, where it is produced exclusively by smallholders. In addition to its edible oil, niger seed is an important source of proteins, carbohydrates, vitamins and fiber that significantly contribute to the human diet. The crop has a wide genetic basis that is reflected in the form of a high variation in desirable traits, including seed yield, seed oil content, seed oil quality and photoperiod sensitivity. However, the wealth of niger genetic diversity has so far remained largely unexploited and research efforts have not yet yielded satisfactory results in the form of new and superior cultivars. The recent molecular and nutritional quality studies coupled with pre-breeding work have opened up new opportunities for the improvement of niger. A high yielding niger cultivars with oil content of up to 60 % and/or oleic acid content of up to 70 % can easily be bred based on Ethiopian niger gene pool through the combined use of novel genomic tools, traditional breeding and farmer-participatory approaches. The improvement of niger will have a significant contribution towards Ethiopia’s food security and sustainable development in general and self-sufficiency in edible oil in particular. Overall, an investment in the niger improvement programs will likely be of benefit far beyond Ethiopia’s borders and could potentially lead to the expansion of the crop outside the regions where it is currently grown.     

Effects of inulin and fructooligosaccharides on growth performance,body chemical composition and intestinal microbiota of farmed rainbow trout (Oncorhynchus mykiss)

The objectives of the present study were to investigate the effects of inulin and fructooligosaccharides (FOS) on growth performance, whole body and fillet chemical composition and intestinal microbiota of rainbow trouts reared under fish farming conditions. Trouts fed inulin‐ or FOS‐containing diets (5 and 10 g kg^?1) exhibited significant (P = 0.030) body weight gain improvements compared with controls. An increase in gross energy (P = 0.044) and Ca content (P = 0.034) in the whole body of trouts was observed for prebiotic treatments. A decrease in crude protein content (P = 0.009) and a tendency to increase total lipid and gross energy contents (P = 0.090 and P = 0.069, respectively) were detected in the fillet tissue for prebiotic treatments. These results clearly indicate that inulin and FOS improved the intestinal absorption of Ca and that the increased amount was predominantly incorporated into bone tissue. Inulin reduced (P = 0.027) the intestinal population of Vibrio spp. in the distal region to such an extent that no viable counts were detected. The presence of Flavobacterium spp. was not detected in any group, and the numbers of Aeromonas spp., Pseudomonas spp. and Gram‐positive bacteria were not affected (P > 0.05).     

New quantitative trait loci for enhancing adaptation to salinity in rice from Hasawi,a Saudi landrace into three African cultivars at the reproductive stage

Salinity is a major constraint affecting rice productivity in rainfed and irrigated agro-ecosystems. Understanding salinity effects on rice production at the reproductive stage could improve adaptation for this trait. Identifying quantitative trait loci (QTLs) controlling adaptation to salinity may also accelerate breeding rice germplasm for environments prone to this stress. We used the salt tolerant landrace ‘Hasawi’ as a donor parent to generate three F₂ offspring (consisting each of 500 individuals) with three African cultivars (‘NERICA-L-19’, ‘Sahel 108’ and ‘BG90-2’) used as recipient parents (RP). The F₂s and F_2:3s were evaluated for grain yield and other traits in saline fields. Salinity caused reduction in all measured traits across the F₂-derived offspring, e.g. grain yield reduced between 65 and 73 %, but some offspring had twice the RP’s grain yield. QTL analysis revealed 75 QTLs for different traits in all 3 genetic backgrounds (GBs): 24 of them were common among all the 3 GBs while 31 were noted in 2 GBs, and 17 in one GB. ‘Hasawi’ contributed on average 49 % alleles to these QTLs. Two yield and yield related QTLs (qGY11 and qTN11) common in all 3 GBs were mapped on the same chromosomal segment suggesting these QTLs might be stable across different GBs. Four other QTLs were strongly associated with salinity tolerance with peak marker RM419, representing a potential candidate for MAS due to high LOD score and relatively large effect QTLs.     

Insecticidal toxicity of thirteen commercial plant essential oils against <Emphasis Type="Italic">Spodoptera exigua</Emphasis> (Lepidoptera: Noctuidae)

We evaluated the chemical composition of thirteen commercially available plant essential oils and their insecticidal activity against the beet armyworm, Spodoptera exigua (Hübner) (Lepidoptera: Noctuidae). Gas chromatography-mass spectrometry was used to characterize the chemical components of the essential oils. A total of 113 compounds were identified, with terpenes (>80%) and aromatic compounds as primary constituents. The toxicity of each pure essential oil was tested separately on third instar larvae and adult beet armyworms by topical application of 0.5 μl oil/ insect. All plant essential oils were found to be harmful to S. exigua, with third instar larvae showing significantly more susceptibility than adults. Essential oils of Cinnamomum zeylanicum and Juniperus virginiana showed the highest toxicity (mortality above 90%) to larvae, while C. zeylanicum and Pogostemon cablin oils were the most harmful compounds (95% mortality) to adults. Cymbopogon winterianus oil caused delayed mortality (similar to the effects of insect growth regulators) as well as malformations in pupae. C. winterianus, Ocimum basilicum and Rosmarinus officinalis oils significantly reduced fecundity, whereas no significant effects were observed on fertility.     

First case of sterility associated with sex chromosomal abnormalities in a jenny

Chromosomal abnormalities are one of the main causes of genetic infertility in horses. Currently, their detection rate is rising due to the use of new diagnostic tools employing molecular markers linked to the sex chromosome pair. Despite genetic similarities, there are no previous reports of sterility associated with chromosomal abnormalities in the domestic donkey (Equus asinus). Hereby, we determined the presence of a chromosomal mosaicism in a female donkey with reproductive problems using molecular methodologies developed for horses. A two‐and‐a‐half‐year‐old jenny characterized by morphological abnormalities of the reproductive tract was cytogenetically analysed using conventional and fluorescent techniques and a group of microsatellite markers (short tandem repeat, STR). At the same time, five ultrasound measures of the reproductive tract were taken and compared with eight contemporary jennies of the same breed. After slaughter, morphological examinations showed that the case study had a blind vaginal vestibule defining an empty pouch that covered the entrance of the cervical os. Histopathological studies demonstrated that this abnormal structure was compatible with a remnant hymen. Molecular markers, STR and fluorescent in situ hybridization determinations revealed that the animal was a 62, XX/61,X mosaic and, therefore, the first case of chromosomal abnormalities in the sex pair reported in donkeys.     

Genomic prediction of the general combining ability of maize lines (Zea mays L.) and the performance of their single crosses

The objective of this study was to assess the effectiveness of genomic selection (GS) on predicting the general combining ability (GCA) of maize lines and the performance of their single crosses. Eight maize lines developed from the different self‐pollination generations of Chalqueño race, along with their 24 single crosses, were evaluated in the field during the years of 2011, 2012 and 2013. Genomic prediction results using genotyping‐by‐sequencing‐based single nucleotide polymorphisms showed that the GCA classification of the parental lines estimated from the SNP information was consistent with the phenotypic classification of the lines evaluated from the field trial data. The prediction accuracy values estimated from the cross‐validation method ranged from 0.49 to 0.61 in the different prediction models. Yield performance of the unevaluated single crosses was predicted based on their SNP information. The total genetic variance of the yield of the single crosses was most explained by the GCA effects. Compared with phenotyping method, GS is a more effective and efficient approach to predict the GCA of maize lines and their hybrid performance.     

Genetic diversity in sorghum [<Emphasis Type="Italic">Sorghum bicolor</Emphasis> (L.) Moench] germplasm from Southern Africa as revealed by microsatellite markers and agro-morphological traits

Cultivated sorghum [Sorghum bicolor (L.) Moench] is an important food security crop in the semi-arid regions of the world including Asia and Africa. Its genetic diversity is contained mostly in traditional varieties and modern cultivars used by farmers. In this study, agro-morphological traits and molecular markers were used to assess genetic diversity in 22 accessions of cultivated sorghum from five countries (Botswana, Namibia, Swaziland, Zambia and Zimbabwe) in the Southern African Development Community (SADC) region. The study revealed a significant variation among 22 accessions in both qualitative and quantitative morphological traits, indicating the accessions’ promising potential as breeding material. For molecular analysis, 11 microsatellite primer-pairs were used, and generated a total of 70 alleles across 20 accessions. Analysis of molecular variance revealed a high level of genetic variation; 67 % among the accessions and 10 % among the five countries. The patterns of genetic diversity and the relationships observed in this study should provide insights for genetic resource conservation and utilization of sorghum germplasm in the SADC region.     

The impact of conservation on the status of the world's vertebrates

Using data for 25,780 species categorized on the International Union for Conservation of Nature Red List, we present an assessment of the status of the world's vertebrates. One-fifth of species are classified as Threatened, and we show that this figure is increasing: On average, 52 species of mammals, birds, and amphibians move one category closer to extinction each year. However, this overall pattern conceals the impact of conservation successes, and we show that the rate of deterioration would have been at least one-fifth again as much in the absence of these. Nonetheless, current conservation efforts remain insufficient to offset the main drivers of biodiversity loss in these groups: agricultural expansion, logging, overexploitation, and invasive alien species.