A potent and broad neutralizing antibody recognizes and penetrates the HIV glycan shield

The HIV envelope (Env) protein gp120 is protected from antibody recognition by a dense glycan shield. However, several of the recently identified PGT broadly neutralizing antibodies appear to interact directly with the HIV glycan coat. Crystal structures of antigen-binding fragments (Fabs) PGT 127 and 128 with Man(9) at 1.65 and 1.29 angstrom resolution, respectively, and glycan binding data delineate a specific high mannose-binding site. Fab PGT 128 complexed with a fully glycosylated gp120 outer domain at 3.25 angstroms reveals that the antibody penetrates the glycan shield and recognizes two conserved glycans as well as a short β-strand segment of the gp120 V3 loop, accounting for its high binding affinity and broad specificity. Furthermore, our data suggest that the high neutralization potency of PGT 127 and 128 immunoglobulin Gs may be mediated by cross-linking Env trimers on the viral surface.     

Soil quality relationships with tree growth in exotic forests in New Zealand

Quantitative information on the relationships between site quality and plantation productivity (dominated by the exotic species Pinus radiata) is required to achieve goals for sustainable forest production. Soil quality is a key component of site quality. A nationwide study of soil quality measurements is reported for 35 representative forest sites, covering a wide range of climatic and edaphic conditions found throughout New Zealand's plantation forest estate, representing most of the soils used for plantation forestry in New Zealand. The objectives of the study were to find the most important soil properties that discriminated among eight New Zealand Soil Orders and determine relationships between Soil Orders and early tree growth rates for P. radiata and Cupressus lusitanica. Soil physical and chemical properties were measured to identify key soil indicators of soil quality related to tree productivity. Tree growth was measured after four years on small plots planted at very high stand density (40 000 stems ha⁻¹). A factorial design was used to examine the influence of three factors on tree productivity: two species, P. radiata D. Don (ectomycorrhizal) and C. lusitanica Miller (endomycorrhizal); with and without fertilizer; and low or high disturbance (soil compaction and/or topsoil scalping by machinery). Carbon content, Phosphorus (P) retention, and soil physical properties that index the degree of soil compactness were strongly correlated to Soil Order. These properties are similar to soil quality factors that correlated with tree growth. Discriminant analyses of soil quality parameters by Soil Order clustered soils based on P retention (phosphate absorption capacity), subsoil Carbon (C), and subsoil air capacity (volume % of voids at 10 kPa matric potential). Allophanic Soils and Podzols clustered (from plots of first versus second canonical variates) separately from the other Soil Orders, which were somewhat clustered on the second variate within a broad clustering on the first variate. Soil Orders were ranked for tree growth rates for both species: pumice Andisols > Inceptisols > tephric Andisols > Entisols > Ultisols > Spodosols (NZ classification: for P. radiata is Pumice > Brown > Pallic > Allophanic > Recent > Raw > Ultic > Podzol and for C. lusitanica Pumice > Pallic > Allophanic > Brown > Raw > Ultic > Recent > Podzol).     

Involvement of antifungal compounds from rockmelon fruit rind (<Emphasis Type="Italic">Cucumis melo</Emphasis> L.) in resistance against the fruit rot pathogen <Emphasis Type="Italic">Fusarium oxysporum</Emphasis> f. sp. <Emphasis Type="Italic">melonis</Emphasis>.

Fusarium rot caused by Fusarium oxysporum f. sp. melonis, causes significant postharvest losses in rockmelon crops. Although latent infection is often present in the field, symptoms of the disease may not appear until fruit maturity. The susceptibility of different-aged rockmelon fruit cv. “Colorado” was determined by inoculating fruit at different stages of development with a spore suspension of F. oxysporum f. sp. melonis. Disease symptoms appeared first and were more severe in older fruit compared to younger fruit. Disease symptoms on fruit 35 DAA (Days After Anthesis) and 42 DAA appeared within 3 days of inoculation and rapidly covered the fruit within 5 days. In contrast, disease symptoms on fruit 7 DAA appeared 6 days after inoculation and grew slowly. Extraction of antifungal compounds without involving acid hydrolysis from 7 DAA fruit rind did not show antifungal activity on TLC plates. However, hydrolysis of the ethyl acetate fraction resulted in a strong fungal inhibitory zone on agar plates against colonies of F. oxysporum f. sp. melonis. Separation of the hydrolysed crude extracts on TLC plates indicated the presence of two distinct antifungal zones with R_f 0.36 and 0.13 in young fruit 7, 14 and 21 DAA. The area of fungal inhibition of compound R_f 0.36 was greater than that of R_f 0.13 on the TLC plate. Extracts from mature fruit of 35 and 42 DAA did not have detectable levels of antifungal compounds. The decrease in the susceptibility of rockmelon fruit during maturity may be correlated to a decrease in the antifungal compounds in the fruit with maturity.     

Vernalization promotes flowering of a heat tolerant Calandrinia while long days replace vernalization for early flowering of Brunonia

The flowering responses of Brunonia australis (blue pincushion) and Calandrinia sp. to vernalization, photoperiod, temperature and plant age were investigated to provide a foundation for manipulating flowering in these potential potted plants. Plants were vernalized at 4.8 °C for 0, 3 or 6 weeks at the plant age of 1–4 or 8–14 leaves. Following vernalization, plants were grown at 25/10 or 35/20 °C (day/night) under short days (11 h, ambient daylight averaged 380 ± 44 μmol m⁻² s⁻¹) or long days (16 h) provided by an additional 5 h night break (21:00–2:00 h at <4.5 μmol m⁻² s⁻¹ from incandescent lamps), for 85 days. This is the first work to investigate flowering of these ornamental species. Both species showed enhanced flowering following vernalization and a quantitative requirement for long days. The reduction of the time until the first visible inflorescence (Brunonia) or flower (Calandrinia) buds by 8–13 days was affected by vernalization for 3 or 6 weeks, respectively. Long days were effective for reducing the time to first visible floral bud and increasing the number of inflorescence or flowers per plant for both species. For Brunonia, LDs replaced vernalization when applied to plants with 1–4 leaves. Raising temperature from 25/10 to 35/20 °C increased the number of flowers per plant of Calandrinia by 2–2.5-fold for plants with 1–4 or 8–14 leaves respectively.     

The interim management procedure approach for assessed stocks: Responsive management advice and lower assessment frequency

Stock assessments are often used to provide management advice, such as a total allowable catch (TAC), to fishery managers. Many stocks are not assessed annually, and the TAC from the previous assessment is often maintained in years between assessments. We developed two interim management procedures (MPs) that update the estimate of current vulnerable biomass from a surveyed index of abundance to adjust the TAC from a previous assessment. These MPs differ in how they handle uncertainty in observed indices. Using closed‐loop simulation, we evaluated the two interim MPs (with 10‐ and 5‐year assessment intervals) against several “status quo” approaches: (1) an annual assessment, and (2) a stock assessment every 5 or 10 years with (a) fixed TACs or (b) projections between assessments. We evaluated performance across three life‐history types and six operating model scenarios. The interim MPs performed similarly to annual assessments in terms of trends in biomass and yield, regardless of the assessment interval of the interim MPs. The interim MPs often produced more yield than the Fixed TAC MP with 10‐year assessment intervals, for example, in depleted scenarios. The Fixed TAC MP performed more similarly to interim MPs when the assessment interval for the Fixed TAC MP was decreased to five years. The interim MPs can also perform well when circumstances arise that are not accounted for in the Projection MP. Our results show that interim MPs should be considered for infrequently assessed stocks or rebuilding stocks, and highlight potential cost savings of interim MPs over annual assessments.     

Evaluating the efficacy of potential fungicide-adjuvant combinations for control of myrtle rust in New Zealand

Journal of Plant Diseases and Protection - Myrtle rust is a serious fungal disease caused by Austropuccinia psidii affecting a number of Myrtaceae species in New Zealand and elsewhere. Control with...     

Nestedness of bird assemblages in fragmented Afromontane forest: the effect of plantation forestry in the matrix

Bird species composition (61 species) of Afromontane forest fragments (n = 19) embedded in a natural grassland matrix or a plantation forestry matrix were compared. Forest bird assemblages in a natural grassland matrix displayed a nested non-random species distribution. Species loss was significantly area-dependent and predictable. Assemblages in the plantation-dominated matrix were also nested but were neither area- nor isolation-dependent and these potential processes had equal influence over bird species composition. Forests patches <50 ha in plantation were more species rich than those in a grassland matrix and visa versa for patches >50 ha. The effect of the matrix is revealed here with arboreal plantation cover promoting dispersal across the landscape, favouring abundant generalist bird species in smaller patches than expected in the plantation matrix, and the loss of some specialists and species living at low densities from large (>50 ha) patches. Because of a significant species-area relationship and possible area-dependent extinction, the largest forest patch in the nested series in a grassland matrix protects most bird species (89%). However, in a plantation matrix the absence of a species-area relationship requires the combination of many larger forest patches to protect most bird species. Plantation forests in the matrix significantly alter forest bird assemblage structure and composition. To avoid the effects of insularisation and to maintain the viability of bird communities in Afromontane forests requires conservation of the larger forests in a natural matrix. However, for forests in a plantation matrix, the management of dispersal processes by manipulation of the matrix may be as important to conserving species and communities as is minimising extinctions. Avoiding placing plantations near large forests, increasing the size of small patches, and where afforestation is unavoidable, placing plantations in the vicinity of small rather than large forest patches, are preferable management practices.     

疫苗诱导对猪肺炎支原体的免疫防卫

疾病防制策略包括调整宿主 (猪 )和入侵者 (猪肺炎支原体 )之间的关系。本文介绍的一种策略是利用免疫接种激活猪的免疫系统。对于猪肺炎支原体的免疫应答 (包括体液、粘膜和细胞介导的各个系统 )非常复杂 ,是当前的热门研究课题。不断进行的研究增加了我们对这一破坏性微生物致病机理的了解