Soil macrofaunal biodiversity in Amazonian pastures: Matching sampling with patterns

Soil biodiversity varies through space as influenced by habitat features and land-use history. The performance of any sampling strategy highly depends on its relevance with regards to this pattern. We surveyed the soil macrofaunal species richness in the pastures of the Benfica Field Station (Eastern Amazonia, State of Pará, Brazil) and described its variability in 4 independent replicate plots. We designed a within-plot sampling scheme that accounted for the soil spatial variation (stratified sampling). Replicated pasture plots had different species richness (49-65) corresponding to a low proportion (40-53%) of the total number of species (123). Pairs of replicated plots showed an outstandingly low number of shared species (28-41% of the species pool). Likewise, different classes of soil thickness, corresponding to a Ferralsol-Cambisol sequence, had different species richness (12-44) and exhibited a very low proportion of shared species (15-29%). The proportion of rare species, i.e. singletons, ranged from 40-51% of the total species richness depending on the plot considered. We used the abundance-based coverage estimator of species richness (ACE) and the Chao shared species estimator that provides a correction based on the relative abundance of rare species. These indices also showed both a high between plots dissimilarity and a substantial within plot variability of species composition. Because of the high proportion of rare species, the rarefaction curves failed to reach any asymptote in all replicated plots. Bootstrap resampling showed that less than 5 samples per stratum (class of soil thickness) provided inconsistent species richness values. We simulated the efficiency of sampling strategies that included our 4 replicate plots and the 3 classes of soil thickness but with varying sampling effort within each stratum. The results indicated that a fairly large (74%) proportion of species would be recorded if strata were sampled using 5 sampling units (hence 15 samples per plot for a total of 4×15=60 samples). This study showed the need for adequate plot replication in soil macrofaunal biodiversity studies. Also, the main relevant factors of within-replicate plot spatial heterogeneity (e.g. soil, vegetation) should be accounted for through stratified sampling. The results showed that there is no way of reducing the local sampling effort below a certain level (here, 5 sampling units per stratum).     

In situ characterization of the granulomatous immune response with time in nonhealing lesional skin of Leishmania braziliensis-infected rhesus macaques (Macaca mulatta)

We have recently introduced a macaque (Macaca mulatta) model of Leishmania braziliensis-induced self-healing cutaneous leishmaniasis in which the T cell-mediated inflammatory response effectively promotes parasite clearance and granuloma resolution. Here we show that macaques infected with a highly pathogenic L. braziliensis strain displayed longstanding granulomatous lesions which lasted until the end of the observation period (52 weeks). Immunoperoxidase staining of representative tissue sections indicated that distinct cell populations (CD3, CD4, CD8, CD20, Foxp3, CD20, CD68, HLA-DR, CCL2, and CXCL-10) change uniformly during infection, suggesting that the same components of the local immune response are working in unison. This model also confirmed that granuloma formation is orchestrated by diverse inflammatory mediators that are important for T helper type 1 (Th1) cell development and macrophage effector functions. Cytometry analysis of ex vivo granuloma-derived leukocytes revealed accumulation of distinct functional subsets of effector and regulatory T cells into the inflamed skin. We provide evidence that local interleukin (IL)-10 production by both Foxp3(+) and Foxp3(-) CD4(+) T subsets is likely important in promoting lesional granuloma maintenance. Further studying the immune suppression mechanisms that induces granulomas in L. braziliensis-infected macaques may reveal new opportunities for therapeutic control of this important human disease.     

The Effect of Oxide Coating Dissolution on Cd Transport Through a Natural Quartz Sand

The role of flow rate on Cd transport through a natural aquifer sand was investigated using a laboratory column set-up with particular reference to dissolution processes of external coatings. Clays and (hydr)oxides dissolution was investigated by tests performed feeding the column with Cd-free solutions at three different flow rates (0.2, 1 and 5 mL min^–1). Flow rate significantly affected only the dissolution of Fe-containing coatings by releasing into the liquid phase different amounts of Fe. Cd transport experiments showed a strong effect of flow rate on Cd breakthrough curves and the lowest Cd adsorption was observed at the lowest flow rate. This behavior was fully explained in terms of competition between dissolved Fe and applied Cd for the same adsorption sites. Comparison of the Cd transport behavior on a pure quartz sand allowed confirmation of the strong influence of clay and (hydro)oxide coatings in determining the surface properties of the heterogeneous natural materials. An equilibrium model was proposed to describe the dynamic Cd behavior under the different experimental conditions (flow rates and Cd concentrations).     

Production of gaseous mercury in tropical hydromorphic soils in the presence of ferrous iron: a laboratory study

In this paper, we demonstrate that reduction of Hg(II) to Hg⁰ under anaerobic conditions, followed by volatilization of Hg⁰ to the atmosphere, might be responsible for the removal of Hg from tropical hydromorphic soils. We conducted a series of kinetic batch experiments in which we added Hg(II) to anoxic suspensions of a soil clay fraction and haematite nanoparticles. The clay fraction came from three depths in a hydromorphic soil by the Leblond River in French Guiana, South America: close to the upper and lower boundaries (30–40 cm and 90–100 cm) and within the central part (60–70 cm) of the frequently water‐saturated clay horizon. We prepared a second set of soil clay fraction suspensions with Fe(III) citrate, whose reduction acted as a source of dissolved Fe(II) to investigate the influence of Fe(II) on the production of Hg⁰. Reduction of Hg(II) to Hg⁰ occurred with all samples amended with Fe(III) citrate. Laboratory experiments with haematite suspensions demonstrated that adsorption of Fe(II) to the haematite surface created very reactive sites for the reduction of Hg(II), while in the absence of haematite particles, no production of Hg⁰ occurred. The greatest production of Hg⁰ was found for the depth intervals 30–40 cm and 90–100 cm, where the total mercury concentration exhibits a local minimum. The observed pseudo‐first order rate constants for the 90–100 cm depth sample were close to rate constants reported for abiotic reduction of Hg(II) by Fe(II) adsorbed on mineral surfaces. Significant production of Hg⁰ was found for the 90–100 cm depth interval sample, both with and without Fe(III) citrate. A biotic pathway as well as abiotic reduction by Fe(II) might be involved in the reduction of Hg(II) to Hg⁰.     

Podzolization as a deferralitization process: dynamics and chemistry of ground and surface waters in an Acrisol – Podzol sequence of the upper Amazon Basin

Hydrochemical processes involved in the development of hydromorphic Podzols are a major concern for the upper Amazon Basin because of the extent of the areas affected by such processes and the large amounts of organic carbon and associated metals exported to the rivers. The dynamics and chemical composition of ground and surface waters were studied along an Acrisol‐Podzol sequence lying in an open depression of a plateau. Water levels were monitored along the sequence over a period of 2 years by means of piezometers. Water was sampled in zero‐tension lysimeters for groundwater and for surface water in the drainage network of the depression. The pH and concentrations of organic carbon and major elements (Si, Fe and Al) were determined. The contrasted changes reported for concentrations of Si, organic carbon and metals (Fe, Al) mainly reflect the dynamics of the groundwater and the weathering conditions that prevail in the soils. Iron is released by the reductive dissolution of Fe oxides, mostly in the Bg horizons of the upslope Acrisols. It moves laterally under the control of hydraulic gradients and migrates through the iron‐depleted Podzols where it is exported to the river network. Aluminium is released from the dissolution of Al‐bearing minerals (gibbsite and kaolinite) at the margin of the podzolic area but is immobilized as organo‐Al complexes in spodic horizons. In downslope positions, the quick recharge of the groundwater and large release of organic compounds lead to acidification and a loss of metals (mainly Al), previously stored in the Podzols.     

agr-Amanitin Tolerance in Mycophagous Drosophila

Six species of Drosophila were tested for tolerance to the mushroom toxin alpha-amanitin, a potent inhibitor of RNA polymerase II. Three nonmycophagous species-D. melanogaster, D. immigrans, and D. pseudoobscura-showed very low survival and long development times in the presence of amanitin. Three mycophagous species-D. putrida, D. recens, and D. tripunctata-showed little or no sensitivity. Analysis in vitro indicated that this tolerance is not based on alteration of the molecular structure of RNA polymerase II.     

Accuracy of the prediction of parturition date through ultrasonographic measurement of fetal parameters in the queen

Veterinary Research Communications -     

Is invasion of deforested Amazonia by the earthworm Pontoscolex corethrurus driven by soil texture and chemical properties?

Pontoscolex corethurus (Müller, 1857) is the most common invasive earthworm in disturbed lands in the tropics. Conditions required for its successful colonization of new plots are still not understood since some areas can be invaded while others, sometimes in the vicinity, are not. We kept newly hatched P. corethrurus in a wide range of Amazonian soils where population densities had been previously evaluated. We identified soil conditions that best sustain survival, soil ingestion and growth of P. corethrurus in controlled laboratory conditions and checked if presence/absence in the field was consistent with laboratory observations. While pH and Ca influenced survival; Mg and C content were the greatest determinants for growth and C:P, Mg and clay contents determined soil ingestion rates. Soil ingestion and growth rate were correlated. There were no differences in earthworm soil ingestion rates between invaded and non-invaded soils. However, growth rate and survival were higher in soils from invaded sites than in soils from non invaded sites, indicating that soil quality may play a role in the invasion process. We identified two cases where P. corethrurus did not occur: (1) unfavourable soil texture and chemical properties, but also some areas with and (2) favourable soil texture and chemical properties but no invasion. Other parameters, like vegetation cover (grass or trees), soil structure and compaction, soil hydrologic processes or biotic resistance of native earthworm communities could potentially also be key elements for understanding why P. corethrurus populations occur in some sites and not in others.     

Aurantoside J: a new tetramic acid glycoside from Theonella swinhoei. Insights into the antifungal potential of aurantosides

The chemical investigation of an Indonesian specimen of Theonella swinhoei afforded four aurantosides, one of which, aurantoside J (5), is a new compound. The structure of this metabolite, exhibiting the unprecedented N-α-glycosidic linkage between the pentose and the tetramate units, has been determined through detailed spectroscopic analysis. The four obtained aurantosides have been tested against five fungal strains (four Candida and one Fusarium) responsible of invasive infections in immuno-compromised patients. The non-cytotoxic aurantoside I (4) was the single compound to show an excellent potency against all the tested strains, thus providing valuable insights about the antifungal potential of this class of compounds and the structure-activity relationships.