Nitrogen fertilizer–induced mineralization of soil organic C and N in six contrasting soils of Bangladesh

A 90‐day laboratory incubation study was carried out using six contrasting subtropical soils (calcareous, peat, saline, noncalcareous, terrace, and acid sulfate) from Bangladesh. A control treatment without nitrogen (N) application was compared with treatments where urea, ammonium sulfate (AS), and ammonium nitrate (AN) were applied at a rate of 100 mg N (kg soil)^–1. To study the effect of N fertilizers on soil carbon (C) turnover, the CO₂‐C flux was determined at nine sampling dates during the incubation, and the total loss of soil carbon (TC) was calculated. Nitrogen turnover was characterized by measuring net nitrogen mineralization (NNM) and net nitrification (NN). Simple and stepwise multiple regressions were calculated between CO₂‐C flux, TC, NNM, and NN on the one hand and selected soil properties (organic C, total N, C : N ratio, CEC, pH, clay and sand content) on the other hand. In general, CO₂‐C fluxes were clearly higher during the first 2 weeks of the incubation compared to the later phases. Soils with high pH and/or indigenous C displayed the highest CO₂‐C flux. However, soils having low C levels (i.e., calcareous and terrace soils) displayed a large relative TC loss (up to 22.3%) and the added N–induced TC loss from these soils reached a maximum of 10.6%. Loss of TC differed depending on the N treatments (urea > AS > AN >> control). Significantly higher NNM was found in the acidic soils (terrace and acid sulfate). On average, NNM after urea application was higher than for AS and AN (80.3 vs. 71.9 and 70.9 N (kg soil)^–1, respectively). However, specific interactions between N‐fertilizer form and soil type have to be taken into consideration. High pH soils displayed larger NN (75.9–98.1 mg N (kg soil)^–1) than low pH soils. Averaged over the six soils, NN after application of urea and AS (83.3 and 82.2 mg N (kg soil)^–1, respectively) was significantly higher than after application of AN (60.6 mg N (kg soil)^–1). Significant relationships were found between total CO₂ flux and certain soil properties (organic C, total N, CEC, clay and sand content). The most important soil property for NNM as well as NN was soil pH, showing a correlation coefficient of –0.33** and 0.45***, respectively. The results indicate that application of urea to acidic soils and AS to high‐pH soils could be an effective measure to improve the availability of added N for crop uptake.     

Complexing of lead by DTPA in calcareous soils

Ten agricultural soils were spiked with 100 μg of Cu, Zn, and Pb g^?1 of soil. The complexation of Pb by 10^?4 M DTPA was determined after 60 days of metal equilibrium. A theoretical stability model of Fe, Mn, Cu, Zn, Ca, and Pb, between pH 1 and 10 was developed. It showed that CuL^3? (55.4 to 63%), CuHL^2? (0.1 to 9.4%), PbL^3? (29.1 to 33.3%), PbHL^2? (0.01 to 2.5%) and MnL^3? (2.8 to 3.2%) as the predominant species between pH 6 and 9. Other species like CaL^3?, CaHL^2?, FeL^2?, FeHL^?, FeL^3?, FeHL^2?, ZnL^3?, ZnHL^2? and MnHL^2? were less than 0.1% between pH 6 and 9. In the experimental soils, DTPA-Pb complexes accounted for 12.3 to 21.2% of metal complexed after 3 days of DTPA equilibriation. DTPA-Cu complexes were the major complexed species in the soils ranging between 72.5 and 82.2% after 3 days equilibriation with 10^?4 M DTPA. The proportion of Zn complexed by DTPA (3.8 to 10.1%) was much greater than predicted by the theoretical model. On the contrary, Mn was not complexed in appreciable amounts by DTPA.     

Molecular simulations probing Kushecarpin A as a new lipoxygenase inhibitor

Zizyphus oxyphylla Edgew is used in Pakistan as a folk medicinal remedy for inflammatory conditions, pains especially rheumatic pain, fevers, allergy and diabetes. The aim of the current study was to scientifically validate the folk use of Z. oxyphylla Edgew by using the isolated compound in vitro and in vivo levels. Kushecarpin A was isolated from ethyl acetate fraction of the plant crude extract. Molecular docking simulations predicted Kushecarpin A as a potential new lipoxygenase (LOX) inhibitor. Kushecarpin A showed significant lipoxygenase inhibition (IC50: 7.2 ± 0.02 μM) thus validated computational prediction. It also exhibited significant and highly significant inhibition (p < 0.05 and p < 0.01) of carrageenan-induced hind paw oedema at the doses of 5, 10 and 20 mg/kg. Kushecarpin A seems to be a potentially new anti-inflammatory compound responsible for anti-inflammatory activities of Z. oxyphylla Edgew. In vitro and in vivo anti-inflammatory inflammatory activities were found in good agreement with the folk medicinal use of Z. oxyphylla Edgew in inflammatory disorders.     

Molecular simulations of Taxawallin I inside classical taxol binding site of β-tubulin

A new taxoid Taxawallin I (1) along with two known taxoids (2-3) were isolated from methanolic bark extract of Taxus wallichiana Zucc. Structural characterization was confirmed by mass and NMR spectral techniques. Taxawallin I exhibited significant in-vitro anticancer activity against HepG2, A498, NCI-H226 and MDR 2780AD cancer lines. Tubulin binding assay was performed to assess its tubulin binding activity. Molecular docking analysis was performed to study the potential binding mode inside the taxol binding site of β-tubulin.     

Diversity in phosphorus mobilisation and uptake in ectomycorrhizal fungi

• Introduction   

Phosphorus (P) is often the first or second element limiting aboveground net primary productivity of forests. Besides low available inorganic orthophosphate (Pi) concentrations, soil may contain high total P contents, as insoluble mineral P or as organic P. Most plants form mycorrhizal associations that improve their P nutrition. Three main hypotheses have been proposed to explain this positive effect through an increase of (1) P mobilisation from mineral P, (2) P mobilisation from organic P and (3) soil exploration and P uptake. However, the positive effect of mycorrhizal symbiosis may be variable with the fungal species forming the association. This could be due to the different abilities of mycorrhizal fungi to mobilise P and/or to take up Pi from the soil.     

Fruit antioxidant activity, ascorbic acid, total phenol, quercetin, and carotene of Irwin mango fruits stored at low temperature after high electric field pretreatment

Greenhouse-grown tree ripe (TR) and mature green (MG) mangoes (cv. Irwin) were exposed to high electric field treatment before 20 and 30 days of storage at 5 degrees C. MG fruits were allowed to ripen at room temperature after low-temperature storage. Fruit physical quality attributes, ascorbic acid, carotene, quercetin, total phenols, and antioxidant capacity were estimated before and after the storage period. Antioxidant capacity of fruit juice was estimated using the ferric reducing antioxidant power (FRAP) assay. Fruit firmness decreased significantly during storage. Titratable acidity decreased 20 days after storage. Total soluble solids did not change during storage. Antioxidant capacity of fruits remained unchanged up to 20 days of storage period and decreased thereafter. Total phenol and carotenes increased during storage. Antioxidant capacity of fruits was significantly correlated only to ascorbic acids. Peel color and carotenes were higher in TR fruits, whereas titratable acidity and firmness were higher in MG fruits. There was no significant difference in other parameters between the stages of picking. Electric field pretreatment affected the respiration and antioxidant capacity of TR fruits and did not have any significant affect on other parameters. TR mangoes of cv. Irwin are more suitable for low-temperature storage and can be successfully stored for up to 20 days at 5 degrees C without any significant losses in functional properties and quality attributes.     

Genetic tracking of the brown bear in northern Pakistan and implications for conservation

Asian bears face major threats due to the impact of human activities as well as a critical lack of knowledge about their status, distribution and needs for survival. Once abundant in northern Pakistan, the Himalayan brown bear (Ursus arctos isabellinus) has been exterminated in most of its former distribution range. It presently occurs sparsely, in small populations, the Deosai National Park supporting the largest isolate. This decline might imply a reduction in genetic diversity, compromising the survival of the population. Using a combination of fecal DNA analysis and field data, our study aimed at assessing the size and genetic status of the Deosai population and give guidelines for its conservation and management. Using fecal genetic analysis, we estimated the population to be 40-50 bears, which compares well with the field census of 38 bears. The northern Pakistani brown bear population may have undergone an approximate 200-300-fold decrease during the last thousand years, probably due to glaciations and the influence of growing human population. However, in spite of the presence of a bottleneck genetic signature, the Deosai population has a moderate level of genetic diversity and is not at immediate risk of inbreeding depression. Gene flow might exist with adjacent populations. We recommend careful monitoring of this population in the future both with field observations and genetic analyses, including sampling of adjacent populations to assess incoming gene flow. The connectivity with adjacent populations in Pakistan and India will be of prime importance for the long-term survival of Deosai bears.     

Characterizing Groundwater Dynamics Based on Impact of Pulp and Paper Mill Effluent Irrigation and Climate Variability

Automated synoptic weather typing and robust orthogonal stepwise regression analysis (via principal components analysis) were applied together to develop within-weather-type air pollution prediction models for a variety of pollutants (specifically, carbon monoxide – CO, nitrogen dioxide – NO₂, ozone – O₃, sulphur dioxide – SO₂, and suspended particles – SP) for the period 1974–2000 in south-central Canada. The SAS robust regression procedure was used to limit the influence of outliers on air pollution prediction algorithms. Six-hourly Environment Canada surface observed meteorological data and 6-hourly US National Centers for Environmental Prediction (NCEP) reanalysis data of various weather elements were used in the analysis. The models were developed using two-thirds of the total years for meteorological and air pollution data; the remaining one-third (randomly selected) was used for model validation. Robust stepwise regression analysis was performed to analytically determine the meteorological variables that might be used to predict air pollution concentrations. There was a significant correlation between observed daily mean air pollution concentrations and model predictions. About 20, 50, and 80% of the 80 prediction models across the study area possessed R ² values ≥ 0.7, 0.6, and 0.5, respectively. The results of model validation were similar to those of model development, with slightly smaller model R ² values.     

Infection and colonization of aseptically micropropagated sugarcane seedlings by nitrogen-fixing endophytic bacterium, Herbaspirillum sp. B501gfp1

In this study, we used Herbaspirillum sp. B501gfp1 (B501gfp1), an isolate from wild rice, to investigate the interaction between a non-host nitrogen-fixing endophytic bacterium and micropropagated sugarcane plants under aseptic condition. Two Japanese sugarcane plants (Saccharum sp.) cultivars (cvs) NiF8 and Ni15 were inoculated using B501gfp1 in two inoculum doses of 10⁸ and 10² bacterial-cells-per-milliliter suspension. The results showed that bacterial cells colonized both the root and stem tissues, and colonization was apparent in the intercellular spaces. Higher bacterial numbers were detected in plant tissues inoculated with the higher inoculum concentration treatment. Bacterial numbers also varied between the two cultivars, with the higher values determined in cv Ni15. This study provides evidence that Herbaspirillum sp. B501gfp1, a rice isolate, could colonize sugarcane tissues, suggesting non-specificity of host plant among endophytes.     

Zinc fertilization of lentil for grain yield and grain zinc concentration in ten Saskatchewan soils

Fertilization of grain legumes with zinc (Zn) can affect both marketable yield and Zn content of the grain, which is important in addressing human nutritional deficiencies in certain regions of the world. A pot experiment was conducted to determine the response of three different market classes of lentil to Zn fertilization using ten surface soils from Saskatchewan (Canada). The distribution of Zn among labile and stable fractions chemically separated from the soil was also determined in the ten prairie soils and related to the lentil responses observed. The three market classes of lentils (large and small green, small red) were grown without Zn (control), and with 2.5 and 5 kg Zn ha^?1 added as zinc sulfate to each soil prior to planting. Zinc fertilizer application significantly influenced grain yield and was soil dependent. A significant increase in grain yield over the control was observed from application of Zn on some low organic matter, high pH Brown Chernozem soils whereas a decrease in grain yield over control was observed in other soils such as a Black Chernozem of high organic matter content and low (<7) pH. Lack of positive yield response to addition of Zn were related to measured high diethylene triamine pentaacetic acid (DTPA) extractable and plant root simulator (PRS) resin membrane probe Zn, and large amounts of native Zn in exchangeable and iron/manganese (Fe/Mn) oxide bound fractions. Application of Zn fertilizer generally increased the grain concentration of Zn. For example, an increase of ～20% in Zn concentration over control was observed when 5 kg Zn ha^?1 was added to a loamy textured low organic matter Brown Chernozem soil. Overall, small green lentil was more consistent in producing a positive response to Zn fertilizer application on soils with low plant available Zn compared to large green lentil and small red lentil.