Genetic diversity of rhizobia associated with alfalfa in Serbian soils

We have evaluated the genetic diversity and phylogeny of alfalfa rhizobia, originating from different types of soils in Serbia and their ability to establish an effective symbiosis with alfalfa (Medicago sativa L.). A collection of 65 strains isolated from root nodules of alfalfa were characterized by rep-PCR analysis, partial and complete 16S rDNA gene and recA gene sequencing, as well as atpD gene sequencing and DNA–DNA hybridizations. The results of the sequence analyses revealed that Sinorhizobium meliloti is the dominant species in alfalfa nodules. Only one strain was identified as Sinorhizobium medicae, two strains as Rhizobium tibeticum and one strain as Rhizobium sp. Despite the fact that the majority of strains were identified as S. meliloti, a high genetic diversity at strain level was detected. Almost all isolates shared the ability to nodulate and fix nitrogen with M. sativa, except 11 of them, which were incapable of fixing nitrogen with this species. About 50% of the isolates showed values of symbiotic effectiveness (SE) above 50%, while 10% of the strains were highly effective with SE values above 70%. Some of the strains which were highly effective in nitrogen fixation at the same time could intensively solubilize phosphates, offering a possibility for multipurpose inoculum development. This was the first genetic study of rhizobia isolated from this region and also the first report of natural presence of R. tibeticum in root nodules of M. sativa.     

An instructional model for training competence in solving clinical problems

We examined the design of a course that aims to ease the transition from pre-clinical learning into clinical work. This course is based on the premise that many of the difficulties with which students are confronted in this transition result from a lack of experience in applying knowledge in real practice situations. It is focused on the development of competence in solving clinical problems; uses an instructional model with alternating clinical practicals, demonstrations, and tutorials; and extends throughout the last pre-clinical year. We used a "proof-of-concept" approach to establish whether the core principles of the course design are feasible with regard to achieving the intended results. With the learning functions and processes as a frame of reference, retrospective analysis of the course's design features shows that this design matches the conditions from theories of the development of competence in solving clinical problems and instructional design. Three areas of uncertainty in the design are identified: the quality of the cases (information, openness), effective teaching (student and teacher roles), and adjustment to the development of competence (progress, coherence).     

Analysis of bacterial load and prevalence of mixed infections with Lawsonia intracellularis, Brachyspira hyodysenteriae and/or Brachyspira pilosicoli in German pigs with diarrhoea

Lawsonia (L.) intracellularis, Brachyspira (B.) hyodysenteriae and B. pilosicoli are important pathogens in domestic pig production world-wide, responsible for porcine intestinal adenomatosis, swine dysentery, and porcine intestinal spirochetosis, respectively. Conventional PCR is the major diagnostic tool in the detection of the three pathogens, but the sole detection of bacterial DNA might lead to misinterpretations of results with respect to their clinical relevance, especially with mixed infections. Thus, the present study targeted the detection and quantification of the three pathogens in samples from herds with a case history of diarrhoea. Herds and samples were selected by the practitioners on a voluntary basis. Results were based on 1176 individual samples from 95 herds from Southern Germany. The pathogens were detected simultaneously by multiplex real-time PCR. The overall prevalence for L. intracellularis, B. hyodysenteriae and B. pilosicoli was 12.6%, 8.4% and 3.2% in faecal samples and 48.4%, 24.2% and 31.6% in herds, respectively. Sixty one percent, 82.6%, and 73.4% of herds positive for L. intracellularis, B. hyodysenteriae, and B. pilosicoli, respectively, had mixed infections. Median log values of DNA equivalents/g of faeces for L. intracellularis, B. hyodysenteriae and B. pilosicoli were 3.3, 5.9 and 3.2, with maxima of 8.3, 8.0 and 6.3, respectively. Within herd prevalence of B. hyodysenteriae and B. pilosicoli as well as the load of B. hyodysenteriae were significantly associated with the severity of diarrhoea.     

Differences between the ovine tonsils based on an immunohistochemical quantification of the lymphocyte subpopulations

In sheep, the pharyngeal first defence line against oral and inhaled antigens is organized in six tonsils. Since tonsils are regarded as secondary lymphoid tissue and part of the acquired immune system which is subjected to induction through contact with antigens, an evaluation of the different lymphocyte populations in tonsils is useful to determine a tendency of the specific tonsils to more inductive or more effective immunity. By means of immunohistochemistry, different lymphocyte populations were quantified and localized using a panel of eight antibodies, i.e. anti-CD45, anti-CD21, anti-CD2, anti-CD3, anti-CD4, anti-CD8, anti-WC1 and anti-Ki67. The CD21+ B lymphocytes were localized within the tonsillar lymphoid follicles. The CD2+/CD3+ T lymphocytes were numerous in the interfollicular regions and were aligned underneath and within the epithelium but were also observed at the CD21+ pole of the lymphoid follicles. Near the lingual and tubal tonsils, and the tonsil of the soft palate, the CD45+ cells around the seromucous glands and in the lamina propria were mainly CD3+ T cells. In all tonsils, the WC1+ gamma delta T cells formed a small lymphocyte population which harboured the lamina propria and the interfollicular region. The relative percentages of the different lymphocyte populations of the large palatine and pharyngeal tonsils, which are macroscopically the most developed, were comparable. In contrast, the lingual tonsil was significantly different from the other tonsils not only by its small size and lack of lymphoid follicles, but also by the lymphocyte populations. Based on the lymphocyte populations, the ovine tonsils can be divided in three groups with the tonsil of the soft palate, the tubal and paraepiglottic tonsil forming an intermediate between the palatine and pharyngeal tonsils as true tonsils on the one side, and the lingual tonsil as a scattered lymphocyte aggregation on the other side.     

Compost Amendment to Sandy Soil Affects Soil Properties and Greenhouse Tomato Productivity

Sandy soils, with low productivity, could be improved by compost application to sustain crop production. This study aimed to examine the effect of three compost types (vegetable, fruit and yard waste compost, garden waste compost, and spent mushroom compost) on basic properties of a loamy sand and greenhouse tomato productivity. Disturbed and intact soil samples were taken from a decade-long compost field experiment on loamy sand with three compost types at application rate of 30 m³ ha^?1 yr^?1 (7.5 ton ha^?1 yr^?1). The soils were characterized for chemical and physical properties. Tomato was planted in a greenhouse using soil samples from the field and vegetative and yield parameters (plant height, stem diameter, leaf number, and fruit yield), water productivity, and harvest index were evaluated. All compost types significantly increased soil total carbon, total nitrogen, pH, electrical conductivity and significantly decreased bulk density, with no effect on plant available water compared to the control. Fresh and dry fruit weights were significantly increased after compost addition. Plant height, leaf number, stem diameter, and total biomass did not significantly improve after compost addition. Spent mushroom compost had greater effect in improving tomato productivity. A decade-long application of composts on loamy sand improved basic chemical and physical properties which were reflected in increased fruit yield in tomato. Since no negative effect of compost was observed, we suggest that sandy soils may serve as a safe end use option for these composts and potentially support crop growth.     

Analysis of return flows in a tank cascade system in Sri Lanka

In Sri Lanka, irrigation reservoirs (tanks) are usually connected sequentially and form cascades along the landscape. A study was carried out in the Anuradhapura District in the dry zone of Sri Lanka to understand the role of return flows in such tank cascade systems. The water balance of a tank cascade system was estimated using hydrological data collected over a one-year period. The system was extended about 25 km along a river composed of three small reservoirs having the command area of 31, 55, and 55 ha, respectively. In this system, about 46% of seepage water from tanks entered the paddy fields of the command area. The crop consumed part of the water and the rest returned to the downstream tank through the drainage canals. Percolation loss in the command areas was low (3.6 mm/day) since a considerable portion of the percolation returned to the downstream tank. These results showed that return flows, which are generally disregarded in the water budget, contributed considerably to the water supply of the tank cascade system.     

A global benchmark map of water productivity for rainfed and irrigated wheat

The growing pressure on fresh water resources demands that agriculture becomes more productive with its current water use. Increasing water productivity is an often cited solution, though the current levels of water productivity are not systematically mapped. A global map of water productivity helps to identify where water resources are productively used, and identifies places where improvements are possible. The WATPRO water productivity model for wheat, using remote sensing data products as input, was applied at a global scale with global data sets of the NDVI and surface albedo to benchmark water productivity of wheat for the beginning of this millennium. Time profiles of the NDVI were used to determine the time frame from crop establishment to harvest on a pixel basis, which was considered the modelling period. It was found that water productivity varies from approximately 0.2 to 1.8 kg of harvestable wheat per cubic metre of water consumed. From the 10 largest producers of wheat, France and Germany score the highest country average water productivity of 1.42 and 1.35 kg m⁻³, respectively. The results were compared with modelling information by Liu et al. (2007) who applied the GEPIC model at a global scale to map water productivity, and by Chapagain and Hoekstra (2004) who used FAO statistics to determine water productivity per country. A comparison with Liu et al. showed a good correlation for most countries, but the correlation with the results by Chapagain and Hoekstra was less obvious. The global patterns of the water productivity map were compared with global data sets of precipitation and reference evapotranspiration to determine the impact of climate and of water availability reflected by precipitation. It appears that the highest levels of water productivity are to be expected in temperate climates with high precipitation. Due to its non-linear relationship with precipitation, it is expected that large gains in water productivity can be made with in situ rain water harvesting or supplemental irrigation in dry areas with low seasonal precipitation. A full understanding of the spatial patterns by country or river basin will support decisions on where to invest and what measures to take to make agriculture more water productive.     

Functional evaluation of the various calculation methods for precompression stress

Precompression stress (σ_p) is commonly used as an indicator for the load carrying capacity of a soil and its stress history. Several calculation methods have been proposed to determine σ_p, but they have proven to be not interchangeable. The aim of this study was to perform a functional evaluation of seven existing methods to test which method would be most recommended to assess soil strength in cultivated fields. This was achieved by investigating the relation of the obtained σ_p of undisturbed soil samples to other soil properties and stress history. Additionally, the robustness of the methods was evaluated by checking their sensitivity to perturbation of the measured strains. The two most commonly used methods, the Casagrande method and Gompertz model fit method, were found to be the least suitable to calculate σ_p. These methods lack robustness and do not yield a significant relation with the relevant soil properties or stress history. Better results were obtained with Intersecting linear regressions or at the inflection point of a fourth-degree polynomial.