Behavioural responses to visual environment in early stage Atlantic cod Gadus morhua L. larvae

Marine fish larvae exhibit species‐specific sensitivity to light, which changes during ontogeny. Our aim was to explore how visual environment, characterized by light intensity, microalgae addition and wall colour, affects spatial distribution of Atlantic cod larvae. We applied two different small‐scale factorial designs, each of them as a series of independent short‐term trials at fixed larval ages from 5 to 35 days post hatch (DPH). Positive phototaxis increased in larvae from 5 to ≈24 DPH, followed by reduced response at later ages. Effects from the experimental factors on larval behaviour changed with age, and significant interactions between factors were present. Algae significantly affected larvae only at 5 DPH, increasing phototactic response. White wall colour induced distribution of larvae close to the tank walls at all ages. The experimental approach demonstrated clear effects from visual environment on larval distribution, and revealed both relative importance of individual factors, interactive effects and temporal changes due to larval ontogeny. Our results suggest that by fine‐tuning the visual environment in tanks, the larval distribution may be managed to improve overall rearing conditions through a more even distribution with reduced closeness to tank walls.     

Interpreting realized pollen flow in terms of pollinator travel paths and land-use resistance in heterogeneous landscapes

Widespread ecosystem change has led to declines in species world-wide. The loss of pollinators in particular constitutes a problem for ecosystem function and crop production. Understanding how landscape change affects pollinator movement, effective pollen flow, and plant and pollinator survival is therefore a global priority. In this study we investigated patterns of effective pollen flow, using wild cherry tree (Prunus avium) progeny arrays, to address two questions in three case studies: Do land-use types present different resistances to pollinator movement? Which pollinator travel path best explains the pollination data (straight lines, weighted straight lines, least cost paths or pair-wise resistance)? Trees and progeny arrays were genotyped and effective pollen flow and pollinator movement were estimated using the spatially explicit mating model. We found that pollinators did modify their travel paths in response to land-use type and arrangement, but the travel path that best described pollinator movement and the resistance rank of the land uses depended on the type and size of land-use patches and the landscape context. We propose a novel theoretical framework rooted in behavioural ecology, the resource model, for interpreting pollinator behaviour in heterogeneous landscapes. We conclude by discussing the importance and practicality of conservation and management strategies in which native and non-native land-use types together provide functional habitat and support ecosystem services across economic landscapes.     

In situ imaging highlights local structural changes during heating: the case of meat

Understanding and monitoring deformation and water content changes in meat during cooking is of prime importance. We show the possibilities offered by nuclear magnetic resonance imaging (MRI) for the in situ dynamic measurement of deformation fields and water content mapping during beef heating from 20 to 75 °C. MRIs were acquired during heating, and image registration was used to calculate the deformation field. The temperature distribution in the sample was simulated numerically to link structural modifications and water transfer to temperature values. During heating, proton density decreases because of a magnetic susceptibility drop with temperature and water expulsion due to muscle contraction. A positive relationship was found between local cumulative deformation and water content. This new approach makes it possible to identify the deformation field and water transfer simultaneously and to trace thermal history to build heuristic models linking these parameters.     

Leak syndrome of potato in Tunisia caused byPythium aphanidermatum andPythium ultimum

Summary TwoPythium spp. were isolated from diseased tubers exhibiting rots at harvest, in summer stores and also in refrigerated storage. Symptoms shared features described for both pink rot caused byPhytophthora erythroseptica and leak caused byPythium spp. The causal agents were identified asPythium aphanidermatum andP. ultimum by morphological and physiological observations and by fingerprinting using oomycete specific primers to amplify the internal transcribed spacer (ITS1) within ribosomal DNAs. The optimum temperatures for infection were 30°C forP. aphanidermatum and 25°C forP. ultimum, corresponding to the optimum temperatures for growth in vitro. The optimum concentration for infection of tubers inoculated by dipping in a suspension of oospores or hyphal swellings after wounding was found to be 10³ reproductive organs/ml, whereas the infection threshold was 10 reproductive organs/ml.     

Effects of soil solarization on soil-borne populations ofPythium aphanidermatum andFusarium solani and on the potato crop in Tunisia

Summary Soil solarization by mulching with polyethylene for 60 days during summer in Tunisia, was effective in reducing dramatically to a depth of 30 cm inoculum levels ofFusarium solani (Fs) from 3,000 to 450 propagules gram⁻¹ of dry soil. Population densities ofPythium aphanidermatum (Pa) were reduced from 1,700 and 3,000 to 0.5 and 1 propagule gram⁻¹ of dry soil in the top 15 cm and at 1–30 cm depth, respectively. After a subsequent autumn potato crop, populations ofPa remained very low in the previously solarized soil whereas propagule density in non-solarized soils was similar to the initial density. Also, inoculum level ofFs increased by 40% in nonsolarized soils while it remained unchanged in solarized soils, suggesting microbial processes that prevented soil reinfestation. All the annual weeds were eradicated by solar heating but not the perennial weedConvolvulus arvensis. Potato plant growth and yields were improved in solarized plots.     

Ostreid herpesvirus 1 detection and relationship with Crassostrea gigas spat mortality in France between 1998 and 2006

ABSTRACT: Since its molecular characterisation, Ostreid herpesvirus 1 (OsHV-1) has been regularly detected in Crassostrea gigas in France. Although its pathogenicity was demonstrated on larval stages, its involvement during mortality outbreaks at the juvenile stage was highly suspected but not evidenced. To investigate mortality outbreaks, the French National Network for Surveillance and Monitoring of Mollusc Health (REPAMO) carried out two surveys in juvenile C. gigas. The first survey lasted from 1998 to 2006 and was an epidemiological inquiry occurring when oyster farmers reported mortality outbreaks. The second survey, a longitudinal one, was set up in 1998 to complete the network observations on OsHV-1. Data analysis showed a specific pattern of mortality outbreaks associated with OsHV-1 detection. Ostreid herpesvirus 1 detection mainly appeared during the summer, suggesting the influence of the seawater temperature on its occurrence. It mostly presented a patchy distribution in the field in contrast to the nursery. Significant relationship between OsHV-1 detection and spat mortality was found, preferentially in sheltered and closed environments. The longitudinal survey confirmed most of the network observations. Although subsequent works particularly epidemiological surveys would be useful to confirm the causal link between the detection of OsHV-1 and the mortality outbreaks in juvenile C. gigas, the role of OsHV-1 in oyster mortality is progressing.     

Can the protozoan parasite Bonamia ostreae infect larvae of flat oysters Ostrea edulis?

Bonamia ostreae is an intracellular protistan parasite affecting flat oysters Ostrea edulis. It can be detected in juveniles but mortalities mainly affect oysters which are more than 2 years old. The parasite is usually observed inside haemocytes and sometimes free, notably in gill epithelia suggesting a parasite release through this organ. However, the infective form and ways of entry and release remain undetermined. Flat oysters incubate their larvae in their pallial cavity for 8-10 days before releasing them into the water column. Flat oysters in Bay of Quiberon in South Brittany (France) are known to be infected with B. ostreae since 1979 and is the most important area in France for O. edulis spat collection. Flat oysters incubating larvae were sampled in this area during summertime between 2007 and 2009. Both adults and larvae were preserved and assayed by PCR and in situ hybridisation (ISH). PCR tests revealed the presence of parasite DNA in some adults and larvae. Specific labelling could be detected by ISH in gills, digestive system, gonad and mantle in adults and in the epithelium surrounding the visceral cavity of some larvae. Our results demonstrate that larvae can be infected with B. ostreae. Larvae might thus contribute to the spread of the parasite during their planktonic life. In addition, their transfer for aquaculture purpose should be controlled especially when they are exported from infected zones.     

Impact of plant cell wall network on biodegradation in soil: Role of lignin composition and phenolic acids in roots from 16 maize genotypes

Residue quality is a key factor governing biodegradation and the fate of C in soil. Most investigations of relationships existing between crop residue quality and soil decomposition have been based on determining the relative proportions of soluble, cellulose, hemicellulose and lignin components. However, cell wall cohesion is increased by tight interconnections between polysaccharides and lignin that involve cross-linking agents (phenolic acids). The aim of this study was to determine the role of lignin composition and phenolic acids on short- to medium-term decomposition of maize roots in soil. Sixteen maize genotypes, presenting a range of chemical characteristics related to root lignin and phenolic acids, were used. The main components were characterized by Van Soest (VS) extraction and cell wall acid hydrolysis, and the non-condensed Syringyl and Guaicyl lignin monomers, esterified phenolic acids and etherified phenolic acids were determined. Maize roots were then incubated in soil under controlled conditions (15 °C, −80 kPa moisture) for 796 days. Results showed that VS extraction over-estimated the structural hemicellulose content and that VS lignin was more recalcitrant than Klason lignin. The tremendous effect of cell wall chemical characteristics was shown by marked variations (almost two-fold differences in C mineralization), between the 16 maize roots. Decomposition was controlled by soluble residue components in the short term whereas lignin and the interconnections between cell wall polymers were important in the long-term. Notably the cell wall domain rich in non-condensed lignin and esterified phenolic acids was prone to decomposition whereas the presence of etherified ferulic acids seemed to hamper cell wall decomposition.     

Growth and Physiological Responses of Triticum aestivum and Deschampsia caespitosa Exposed to Petroleum Coke

Methylibium petroleiphilum PM1, which is capable of degrading of methyl tert-butyl ether (MTBE), was immobilized in calcium alginate gel beads. Various applications were explored to increase the mechanical strength of these gel beads. The introduction of 0.3 mol/L calcium chloride into the crosslinking solution, 0.002 mol/L calcium chloride into the growth medium, and 0.2% polyethyleneimine (PEI) as chemical crosslinking agent increased the stability of the Ca-alginate gel beads under the operation conditions of the bioreactor. The degradation rates of MTBE by the immobilized cells in the bioreactor system operated in batch and continuous mode , respectively, were compared. A MTBE biodegradation rate of 5.79 mg/L·h was reached for over 400 h (50 batches), and the immobilized cells in the bioreactor removed >96% MTBE during 50 days of operation. Molecular analysis of the PM1 cells revealed that microbial growth occurred predominantly as microcolonies in the outer area of the beads during the first 20 days of operation. The results of this study show that a continuous-mode, fixed-bed bioreactor reactor coupled with PM1-immobilized cells is a promising technology for remediating MTBE-contaminated groundwater.     

Early degradation of plant alkanes in soils: A litterbag experiment using C-labelled leaves

We monitored the carbon isotope composition of bulk leaves and specific long-chain alkanes during a four-year litterbag experiment using ¹³C-labelled leaves and unlabelled reference leaves of the European beech tree (Fagus sylvatica L.). Whereas the isotope composition of alkanes from ¹³C-enriched leaves exhibited a marked decrease in ¹³C-content, the isotope composition of unlabelled reference leaves remained nearly constant. We interpreted this difference as evidence for a microbial contribution to the long-chain alkane pool of the decomposing leaves and related it to the progressive invasion of leaves by soil organisms which was revealed upon microscopic examination. These results suggest that long-chain alkanes may not provide an unaltered record of organic carbon isotope composition in soils and sediments.