Species Composition,Diversity and Productivity of Homesteads in Southeastern Bangladesh

A homestead is an integrated production system where trees, crops, livestock and poultry are found in and around the household residence in Bangladesh. It is a potential production unit that provides various product, service and ecological functions. Almost all people in Bangladesh including landless households have homesteads in which they grow trees and crops even in a small piece of land. This study characterizes the species composition, diversity and productivity of the homestead production system in the Teknaf peninsula, southeastern Bangladesh. Survey data collection was from a total of 180 homesteads covering five household categories: large, medium, small, marginal and landless. Vegetable, fruit, timber, and livestock and poultry were common components in the homestead production system. Various types of plants were mainly concentrated in back yards, front yards, boundaries and corners of homesteads. The mean number of tree species per homestead was about 15. In total, 189 tree and shrub species were recorded, and were distinctly high and low in the large (363.7) and landless (55.7) household categories. Species composition, diversity and productivity of homesteads were found to be related to household categories. Richness and diversity of tree and shrub species increased with household size. Betel nut was the dominant tree species followed by mango, jackfruit and coconut. Annual income from homesteads also varied among the household categories, with a mean contribution of the homestead to annual income of about 25 %. A large portion of homestead income came from betel nut trees. There is scope to increase species diversity and income by designing homesteads with the engagement of women and other family members.     

Interference with cell-to-cell movement of <Emphasis Type="Italic">Tomato mosaic virus</Emphasis> by transient overexpression of <Emphasis Type="Italic">Arabidopsis thaliana</Emphasis> KELP homologs from different plant species

The KELP protein of Arabidopsis thaliana (AtKELP), which binds to the Tomato mosaic virus (ToMV) movement protein in vitro, can interfere with cell-to-cell movement of the virus under transient overexpression conditions. In this study, we constructed expression plasmids encoding a fluorescent protein fused to AtKELP or to its homolog from Brassica, Nicotiana, Solanum, or Oryza species. When expressed transiently, all the AtKELP homologs inhibited the cell-to-cell movement of ToMV with different efficiencies. The results of domain swapping between two selected AtKELP homologs suggest the importance of combination between the N- and C-terminal half regions for high inhibitory function.     

The smell and odorous components of dried shiitake mushroom, Lentinula edodes VI: increase in odorous compounds of dried shiitake mushroom cultivated on bed logs

Odor is one of the most important characteristics affecting consumer preference for dried shiitake mushrooms [Lentinula edodes (Berk.) Pegler]. In our previous studies, we found that the odor content of commercial dried products was too weak for most people, and that the odorous compound content could be increased by adding amino acids to sawdust media. Currently, however, bed-log cultivation is used to produce fruiting bodies for dried products. The purpose of this study was to fi nd a method to increase the content of odorous compounds in dried products cultivated on bed logs. Pressure injection of amino acids from the side of the bed log was the most effi cient method, but it had some problems. Hence, a simpler and less troublesome method was developed, i.e., injecting amino acid solution from small bottles set in deep holes bored in the sides of the bed logs. In fruiting bodies cultivated on bed logs injected with amino acid solution by the improved method, the mean contents of lentinic acid, a precursor of the odorous compound lenthionine, approximately doubled compared to that in the untreated logs, although the infi ltration area of the solution injected by the improved method was smaller than that by the former method.     

The smell and odorous components of dried shiitake mushroom, Lentinula edodes V: changes in lenthionine and lentinic acid contents during the drying process

This study on dried shiitake mushroom [Lentinula edodes (Berk.) Pegler] focuses on the behavior of the aromatic lenthionine compound and its precursor, lentinic acid, during the drying process. Only a small amount of lenthionine was present after the drying process, regardless of the drying temperature or time; however, the amount increased during the rehydration process using pH 8.0 buffer. The lenthionine content after incubation in the buffer was correlated with the lentinic acid content in the dried shiitake mushroom. The lentinic acid content increased signifi cantly during the drying process at 40°C up to 4 h. The results show that the characteristic smell of dried shiitake mushroom was weak after drying, and that rehydration in a mild alkaline solution was necessary to increase the smell. The lentinic acid content of dried shiitake could serve as an indicator of the smell produced by rehydration and would be useful in screening to select odor-rich strains. Moderate heating likely caused the increase in lentinic acid content, which might be related to a reaction to heat.     

Epigenetic assessment of environmental chemicals detected in maternal peripheral and cord blood samples

Epigenetic alteration is an emerging paradigm underlying the long-term effects of chemicals on gene functions. Various chemicals, including organophosphate insecticides and heavy metals, have been detected in the human fetal environment. Epigenetics by DNA methylation and histone modifications, through dynamic chromatin remodeling, is a mechanism for genome stability and gene functions. To investigate whether such environmental chemicals may cause epigenetic alterations, we studied the effects of selected chemicals on morphological changes in heterochromatin and DNA methylation status in mouse ES cells (ESCs). Twenty-five chemicals, including organophosphate insecticides, heavy metals and their metabolites, were assessed for their effect on the epigenetic status of mouse ESCs by monitoring heterochromatin stained with 4￠,6-diamino-2-phenylindole (DAPI). The cells were surveyed after 48 or 96 h of exposure to the chemicals at the serum concentrations of cord blood. The candidates for epigenetic mutagens were examined for the effect on DNA methylation at genic regions. Of the 25 chemicals, five chemicals (diethyl phosphate (DEP), mercury (Hg), cotinine, selenium (Se) and octachlorodipropyl ether (S-421)) caused alterations in nuclear staining, suggesting that they affected heterochromatin conditions. Hg and Se caused aberrant DNA methylation at gene loci. Furthermore, DEP at 0.1 ppb caused irreversible heterochromatin changes in ESCs, and DEP-, Hg- and S-421-exposed cells also exhibited impaired formation of the embryoid body (EB), which is an in vitro model for early embryos. We established a system for assessment of epigenetic mutagens. We identified environmental chemicals that could have effects on the human fetus epigenetic status.     

How different or similar are nematode communities between a paddy and an upland rice fields across a flooding-drainage cycle?

The paddy field is being recognised as a biodiversity hotspot fostering a variety of organisms. However, there are few studies on the ecology of paddy field nematodes. We characterised nematode communities in rice paddy fields by comparing them with upland fields of rice or soybean. We examined nematode communities of the top (0-15 mm) and second (15-50 mm) soil layers before flooding (March or April), during flooding (June or July) and during the draining period (October) 2007-2009. We found that the nematode community in the paddy was different than that in the upland fields during all periods. Rhabdolaimus, Tobrilus, Mesodorylaims and Monhysteridae characterised the top of the paddy and Hirschmanniella characterised the second layer of the paddy. Total nematode density was generally lower in the paddy than in the upland field. However, the density in the paddy top layer increased with time from the flooding period to the draining period, during which time it was about the same as (or even greater than) the peak density in the upland fields. The density in the second layer of the paddy remained lower than that in the top layer of the paddy throughout the time course. Community diversity values were generally greater in the paddy top layer than in the paddy second layer across the six sampling periods, but periodic differences between the paddy and upland fields or between soil layers were not significant. During the flooding period, the F/(F + B) (13-37) and Enrichment Index (17-38) values were lower in the paddy than in the upland fields (32-47, 37-74, respectively) to reflect that bacteria dominate over fungi with slow decomposition due to anaerobic conditions in the flooded paddy field. In addition, particularly in the top layer, the Maturity (2.0-2.4) and Structure Index (23-72) values were greater in the paddy than in the upland fields (1.7-2.1, 9-15, respectively), indicating a well-developed ecosystem under water. These unique nematode communities persisted during the draining period, but there was a rapid increase in opportunistic bacterivores, which increased the EI values. We suggest that bactivorous nematodes in the families Cephalobidae and Chronogasteridae, herbivores in the genus Hirschmanniella, and fungivores in the genus Filenchus may be specific to paddy field soil rather than to pond and lake sediments.     

Hepatitis E in southern Vietnam: Seroepidemiology in humans and molecular epidemiology in pigs

Viral pathogens account for a significant proportion of the burden of emerging infectious diseases in humans. The Wellcome Trust‐Vietnamese Initiative on Zoonotic Infections (WT‐VIZIONS) is aiming to understand the circulation of viral zoonotic pathogens in animals that pose a potential risk to human health. Evidence suggests that human exposure and infections with hepatitis E virus (HEV) genotypes (GT) 3 and 4 results from zoonotic transmission. Hypothesising that HEV GT3 and GT4 are circulating in the Vietnamese pig population and can be transmitted to humans, we aimed to estimate the seroprevalence of HEV exposure in a population of farmers and the general population. We additionally performed sequence analysis of HEV in pig populations in the same region to address knowledge gaps regarding HEV circulation and to evaluate if pigs were a potential source of HEV exposure. We found a high prevalence of HEV GT3 viral RNA in pigs (19.1% in faecal samples and 8.2% in rectal swabs) and a high HEV seroprevalence in pig farmers (16.0%) and a hospital‐attending population (31.7%) in southern Vietnam. The hospital population was recruited as a general‐population proxy even though this particular population subgroup may introduce bias. The detection of HEV RNA in pigs indicates that HEV may be a zoonotic disease risk in this location, although a larger sample size is required to infer an association between HEV positivity in pigs and seroprevalence in humans.     

The smell and odorous components of dried shiitake mushroom, Lentinula edodes III: substances that increase the odorous compound content

This study formed part of an effort to improve the quality of dried shiitake mushroom [Lentinula edodes (Berk.) Pegler], in accordance with consumer preferences, and deals with the search for substances that increase the odorous component content. From analysis of sulfur and sulfur-containing substances in the culture substrate, rice bran was found to be the main source of sulfur, and 75% of this was present as cysteine and methionine. The sulfur-containing substances were added to a sawdust medium containing only rice bran and sawdust as a substrate; shiitake mushrooms were cultivated in the medium, the fruiting bodies were dried, and the 1,2,4-trithiolane content in the fruiting bodies was measured as an indicator of the odorous compounds. Of the sulfur-containing substances, those that increased odorous compounds the most were cysteine and methionine. The efficiency of cysteine in this regard was higher than that of methionine. It was also noted that the amount of glutamic acid increased the odorous compounds in combination with cysteine and methionine. Furthermore, the addition of both amino acids and glutamic acid had no negative effect on the yield. These results showed that it is possible to produce dried shiitake mushrooms with a smell suitable for particular consumer preferences.     

The impact of forest clear-cutting on soil temperature: a comparison between before and after cutting,and between clear-cut and control sites

Soil temperature is one of the most important factors governing biological activity in the soil. This study was conducted to investigate how forest clear-cutting changes soil temperature. Soil temperatures at 0.5, 1.0, 2.0, and 3.0m depths were measured in two neighboring forest watersheds (35°12N, 140°06E) in Chiba Prefecture, Japan, from 1994 to 2000. One watershed was clear-cut 5 years after the observations began. After clear-cutting, the annual mean soil temperature at 0.5, 1.0, 2.0, and 3.0m depths rose by about 2.2, 2.0, 1.7, and 1.4°C, respectively. The maximum respective soil temperatures rose by about 3.2, 3.0, 2.2, and 1.8°C. The minimum soil temperature rose slightly (1°C). The range of temperatures increased by 3.0, 2.4, 1.6, and 1.4°C, respectively. In our study, forest clear-cutting raised maximum and average soil temperatures but hardly changed minimum soil temperature. This is probably because solar radiation dominated in the summer season and increased soil temperature; on the other hand, net long-wave radiation, and releases of latent and sensible heat from the soil surface, were predominant in the cool season.