Non-lactational traits of importance in dairy cows and applications for emerging biotechnologies

Dairy cattle have traditionally been selected for their ability to produce milk and milk components. The traditional single-minded approach to selection of dairy cattle has now changed and secondary traits are being included in selection indices by decreasing the emphasis on production. Greater emphasis on non-production traits reflects the industry's desire for functional dairy cattle. Six broad categories of non-lactational traits are discussed in this review. They are: type; growth, body size and composition; efficiency of feed utilisation; disease resistance, e.g. udder health as measured by somatic cell score; reproduction; and management. Most of these traits can be found within selection indices worldwide, although relative emphasis varies.

The non-lactational traits mentioned above are quantitative, meaning that the phenotype in the whole animal represents the sum of lesser traits that cannot be easily measured. The physiological mechanisms that underlie quantitative traits are extremely complex. Genetic selection can be applied to quantitative traits but it is difficult to link successful genetic selection with the underlying physiological mechanisms. The importance that the bovine genome sequence will play in the future of the genetics of dairy cattle cannot be understated. Completing the bovine genome sequence is the first step towards modernising our approach to the genetics of dairy cattle.

Finding genes in the genome is difficult and scanning billions of base pairs of DNA is an imperfect task. The function of most genes is either unknown or incompletely understood. Combining all of the information into a useable format is known as bioinformatics. At the present time, our capacity to generate information is great but our capacity to understand the information is small. The important information resides within subtle changes in gene expression and within the cumulative effect that these have.

Traditional methods of genetic selection in dairy cattle will be used for the foreseeable future. Most non-lactational traits are heritable and will be included in selection indices if the traits have value. The long-term prognosis for genome science is good but advances will take time. Genetic selection in the genome era will be different because DNA sequence analysis may replace traditional methods of genetic selection.     

Elevated [CO2] and warming increase the macronutrient use efficiency and biomass of Stylosanthes capitata Vogel under field conditions

Stylosanthes capitata Vogel is a C3 forage legume widely cultivated in tropical and subtropical pastures. However, the nutrient dynamics of this species under future climate change is unknown. Therefore, this study aimed to evaluate the nutrient content, nutrient accumulation, nutrient use efficiency and growth of S. capitata exposed to increased [CO₂] and temperature under field conditions using two levels of atmospheric [CO₂] (ambient and elevated—600 ppm) and two canopy temperature (ambient and elevated—2°C). Treatments were applied at field conditions, for 30 days, using a free-air carbon dioxide enrichment (FACE) and a free-air temperature-controlled enhancement (T-FACE) systems. Warming showed no effects on macronutrient content, but increased the accumulation of nitrogen, potassium, calcium, magnesium and sulphur, the nutrient use efficiency and root dry mass. Elevated [CO₂] alone had no effect on most of the parameters evaluated. However, the combination of elevated [CO₂] with warming improved the nutrient accumulation, nutrient use efficiency and whole-plant growth more than under isolated conditions of elevated [CO₂] or warming. Based on our short-term results, we concluded that an increment of atmospheric [CO₂] and temperature will benefit S. capitata growth, suggesting no alterations in the actual fertilizer programs for this species.     

Managing leaf‐cutting ants: peculiarities,trends and challenges

Leaf‐cutting ants are generally recognized as important pest species in Neotropical America. They are eusocial insects that exhibit social organization, foraging, fungus‐cultivation, hygiene and a complex nest structure, which render their management notoriously difficult. A lack of economic thresholds and sampling plans focused on the main pest species preclude the management of leaf‐cutting ants; such management would facilitate their control and lessen insecticide overuse, particularly the use of insecticidal baits. Recent restrictions on the use of synthetic compounds for such purposes impose additional challenges for the management of leaf‐cutting ants. Considerable effort has been exerted regarding these challenges, which are addressed herein, but which also remain challenges that are yet to be conquered. © 2013 Society of Chemical Industry     

Coffee rust genome measured using flow cytometry: does size matter?

The genome size of most rust species is unknown due, in part, to technical constraints, especially the difficulty in accessing spores to extract the nuclei for cytometry. Using the urediniospores of coffee rust, Hemileia vastatrix, an improved methodology involving flow cytometry was developed for accurate measurement of the nuclear genome size. The results revealed that the genome of this primitive rust fungus is unusually large – measuring 1C‐value = 0·75 pg (733·5 Mb) – significantly bigger than other species quantified thus far in the more advanced rust lineages. The evolutionary consequences and the potential ecological constraints of this large genome size are discussed in relation to the epidemiology of coffee rust.     

Carbon and nitrogen mineralization in soil of leguminous trees in a degraded pasture in northern Rio de Janeiro,Brazil

Use of legume trees can improve soil quality in degraded pastures. The aim of this study was to characterize C and N mineralization kinetics and estimate the potentially mineralizable C and N in soil under Mimosa caesalpiniifolia Benth. and Acacia auriculiformis A. Cunn.ex Benth. secondary forest and pasture in red-yellow latosols in southeast Brazil. We conducted a laboratory aerobic incubation experiment using a completely randomized design of four replicates and four types of plant cover using a modified version of the Stanford and Smith technique(1972) to study C and N mineralization potential.Potentially mineralizable N(N_o) ranged from 135 to170 mg kg-~(1). The predominant form of mineral N for all types of plant cover was N-NO_3~-. M. caesalpiniifolia was the only species that had a positive influence on N mineralization. Neither of the legumes influenced C mineralization in pasture or secondary forest. The model of N mineralization corresponded to a sigmoidal curve while C mineralization corresponded to an exponential curve,revealing that the N and C mineralization processes were distinct. N mineralized by M. caesalpiniifolia(216 kg of N ha~(-1)) was adequate to meet the N requirement for a livestock-forest system.     

Expression levels of mRNA-encoding PDGF receptors in goat ovaries and the influence of PDGF on the in vitro development of caprine pre-antral follicles

The aims of this study were to investigate the expression levels of mRNA for platelet-derived growth factor (PDGF) receptors (PDGFR-α and -β) in caprine follicles at different developmental stages and to evaluate the influence of PDGF on the in vitro development of pre-antral follicles. For this, goat primordial, primary and secondary follicles, as well as small (1-3 mm) and large (3-6 mm) antral follicles, were obtained, and PDGFR-α and -β mRNA levels were quantified by real-time PCR. Furthermore, pre-antral follicles (≥ 200 μm) were isolated from goat ovaries and cultured for 18 days in α- minimum essential medium supplemented with PDGF at 50 or 100 ng/ml, containing or not FSH. Real-time PCR showed highest PDGFR-α mRNA levels in secondary follicles, while PDGFR-β mRNA levels were highest in primary follicles onwards. Both receptors showed higher mRNA levels in granulosa/theca cells from small and large antral follicles than in their corresponding cumulus-oocyte complexes. In culture, the percentage of antrum formation was significantly higher in 100 ng/ml PDGF compared with the same PDGF concentration associated with FSH. After 18 days, PDGF in both concentrations associated with FSH promoted follicular growth significantly higher than the control. Moreover, the addition of FSH to 50 ng/ml PDGF positively influenced the follicular growth when compared with the same PDGF concentration in the absence of FSH. In conclusion, PDGF is important for early goat folliculogenesis, because the presence of PDGFR-α and -β mRNA was detected in all follicular categories, and PDGF associated with FSH stimulated the growth of goat pre-antral follicles isolated and cultured in vitro.     

Proteomic analyses of Ehrlichia ruminantium highlight differential expression of MAP1-family proteins

The Rickettsiales Ehrlichia ruminantium (ER) is the causative agent of heartwater, a fatal tick-borne disease of livestock in sub-Saharan Africa and in the Caribbean, posing strong economical constraints to livestock production. In an attempt to identify the most prominent proteins expressed by this bacterium, especially those encoded by the major antigenic protein 1 (map1) multigene family, a proteome map of ER cultivated in endothelial cells was constructed by using two dimensional gel electrophoresis combined with mass spectrometry. Among the sixty-four spots detected, we could identify only four proteins from the MAP1-family; the other proteins detected were mainly related to energy, amino acid and general metabolism (26%), to protein turnover, chaperones and survival (21%) and to information processes (14%) or classified as hypothetical proteins (23%). Additional studies on MAP1-family protein using immunochemical labeling also revealed that these proteins are differentially expressed along the bacterium life cycle, presenting different structural organization. Interestingly, when infectious elementary bodies (EBs) are released from host cells, MAP1 appears to be organized in SDS and heat-resistant dimers and trimers stabilized by disulfide bridges. Overall, the results presented herein not only reveal the first partial proteome map of ER but provide new insights on the expression ER MAP1-family proteins in host endothelial cells.     

QTL mapping and identification of corresponding genomic regions for black pod disease resistance to three <Emphasis Type="Italic">Phytophthora</Emphasis> species in <Emphasis Type="Italic">Theobroma cacao</Emphasis> L.

The cacao tree (Theobroma cacao L.) is a species of great importance because cacao beans are the raw material used in the production of chocolate. However, the economic success of cacao is largely limited by important diseases such as black pod, which is responsible for losses of up to 30–40% of the global cacao harvest. The discovery of resistance genes could extensively reduce these losses. Therefore, the aims of this study were to construct an integrated multipoint genetic map, align polymorphisms against the available cacao genome, and identify quantitative trait loci (QTLs) associated with resistance to black pod disease in cacao. The genetic map had a total length of 956.41 cM and included 186 simple sequence repeat (SSR) markers distributed among 10 linkage groups. The physical “in silico” map covered more than 200 Mb of the cacao genome. Based on the mixed model predicted means of Phytophthora evaluation, a total of 6 QTLs were detected for Phytophthora palmivora (1 QTL), Phytophthora citrophthora (1 QTL), and Phytophthora capsici (4 QTLs). Approximately 1.77–3.29% of the phenotypic variation could be explained by the mapped QTLs. Several SSR marker-flanking regions containing mapped QTLs were located in proximity to disease regions. The greatest number of resistance genes was detected in linkage group 6, which provides strong evidence for a QTL. This joint analysis involving multipoint and mixed-model approaches may provide a potentially promising technique for detecting genes resistant to black pod and could be very useful for future studies in cacao breeding.     

Past land-use and ecological resilience in a lowland Brazilian Atlantic Forest: implications for passive restoration

The ecological resilience of abandoned pastures has important implications for the potential of passive restoration in the Brazilian Atlantic Forest, especially in the face of the ambitious restoration targets for this biodiversity hotspot. In the present study, we aimed to investigate the influence of past land-use on natural regeneration in two secondary forests that established on abandoned pastures with different land use histories (Abandoned + Fire—15 years since the last fire event and Abandoned—36 years ago) in a lowland Brazilian Atlantic Forest. Both secondary forests exhibit low resilience for the three analyzed attributes: vegetation structure, richness, and species composition. Secondary forests affected by fire have the lowest values for species richness, aboveground biomass and leaf area index compared to old-growth forests. Secondary forests were dominated by Moquiniastrum polymorphum—Asteraceae, which was absent from the old-growth forests. Fire resistance, capacity to establish in nutrient-poor soils and efficient seed dispersal in human-modified landscapes are important attributes that may explain the dominance of this species. We demonstrate that even in sites considered appropriate for passive restoration a priori (e.g. located in a protected area, 36 years since abandonment and close to old-growth forests), secondary forests exhibited low aboveground biomass and communities were dominated by few species. Therefore, our results highlight the effects of past land-use on natural regeneration and suggest the necessity to use interventions such as enrichment plantings, nucleation techniques and assisted natural regeneration in order to accelerate forest restoration.