Analysis of new temperament traits to better understand the trait spirit assessed in breeding field tests for Icelandic horses

This study investigated different aspects of the trait spirit that is routinely recorded in breeding field tests (BFTs) for Icelandic horses. Genetic parameters were estimated for spirit and six newly introduced temperament suppleness traits assessed by judges and riders in Icelandic BFTs, and for everyday life temperament traits assessed by owners of breeding horses in 2014 and 2015. The findings suggested moderate heritability for some temperament traits assessed by riders in BFTs and showed that the assessment method needs to be improved in order for judges to discern the variation in these traits. Furthermore, according to estimated correlations the score for spirit described only part of the general temperament of the horse, where aspects of general nerve strength was not well covered. Nevertheless, no clearly unfavourable correlations with spirit were found and the majority of horse owners surveyed in this study were satisfied with the assessment for spirit.     

Importance of personality traits in horses to breeders and riders

Especially in horses, personality traits play an important role because horses' behavior influences their quality as a riding partner. In contrast to that, no objective assessment of horses' personality traits is available at present. Although initial efforts are made in this field, a successful implementation of behavior tests into horse performance tests depends on the acceptance of the riders and breeders. Therefore, the aim of the present study was to assess the importance of personality traits to breeders and riders as well as the degree of riders' acceptance of a temperament test as a more objective means of assessing equine personality traits. Using a web-based survey consisting of a 41-item questionnaire, a total of 1087 competition riders (49.3%), breeders (39.0%), leisure riders (37.9%), and professional riders (8.6%) of 13 countries were recruited to participate in the survey. When asked to split 1000 Euro among the different traits listed in the breeding goal, respondents clearly assigned more weight to the personality-related character and temperament traits (least squares mean ± standard error; P < 0.005: €228.7 ± 17.6) and willingness to work (€123.0 ± 9.6) compared with performance traits, such as the quality of trot (€77.7 ± 6.9) or show jumping (€68.0 ± 12.3). Nevertheless, expected differences in relative weighting of traits between the different groups of riders were confirmed (e.g., character and temperament: €209.3 ± 6.1 [leisure riders] vs. €149.7 ± 5.4 [competition riders], P < 0.0001). When asking why personality traits are so important, the simplification of daily work with the horses (47.9%) and relationship between horse and human (44.9%) as well as a more comfortable and safer handling (31.5%) were most commonly listed. As much as 45.6% of all participants see quality problems with the current assessment and suggested the evaluation of all breeding animals (30.1%), followed by a better standardization of assessment procedures (25.5%) and a move to more objective criteria such as the introduction of a temperament test (20.3%) for solving the problems. The present survey revealed that behavior traits are very important to all groups of riders and breeders, although there are diverse opinions about it. According to the participants, there is a need for and a high potential in the move toward more objective assessment methods of horses' personality traits, and participants would support a restructuring of the current assessment.     

Genetic analyses of new movement traits using detailed evaluations of warmblood foals and mares

Detailed movement evaluations of warmblood foals and mares were performed in connection with regular breeding events of the Oldenburg horse breeding societies in 2009 and 2010. Unfavourable movement characteristics considered indicative for impaired balance were noted by a special judge (SJ) and the regular judges of the breeding events (RJ) and served as the basis for definition of new movement traits. Detailed movement information on 3374 foals and 2844 mares showed that more severe findings like irregular motion pattern in hind legs or irregularity in general motion pattern occurred only sporadically (prevalences of 1-2%). Irregular tail tone or posture was documented for 4% of the foals and 5% of the mares, resulting in prevalences of the comprehensive trait indications of imbalance (IMB) of 6.2% (foals) and 5.5% (mares). Binary coding was used for all traits, and genetic parameters were estimated bivariately in linear animal models with residual maximum likelihood. Comparative analyses between judges revealed that differences between trait definitions of SJ and RJ were larger in the mares than in the foals, but justified combined use of SJ and RJ information in both age groups. Heritability estimates for the movement traits ranged on the original scale from 0.02 to 0.26 in the foals and from 0.03 to 0.12 in the mares, with heritabilities for IMB on the underlying liability scale of 0.46 (foals) and 0.22 (mares). Comparative analyses between age groups indicated that common genetic factors may be responsible for findings of impaired balance in foals and mares. The results implied that horse breeding may benefit from using the early available information on the movement of foals obtained by detailed movement evaluations, although favourable combination of foal and mare data in future genetic evaluations may require refined recording of unfavourable movement characteristics in the adult horses.     

Should We Agree to Disagree? An Evaluation of the Inter-Rater Reliability of Gait Quality Traits in Franches-Montagnes Stallions

Gait quality, that is, the way horses move according to functional and aesthetic principles, englobes many traits that are scored by experts during breeding competitions. The experts can score a trait on a subjective valuating (SV) scale or on a linear profiling (LP) scale representing the biological extremes of the population. However, the reliability of the appraisal of gait quality traits has not been extensively evaluated. In this study, seven breed experts appraised the walk and trot quality of 24 Franches-Montagnes stallions presented in hand on a sand track. Inter-rater reliabilities of six traits (five SV and one LP) at the walk and eight traits (five SV and three LP) at the trot were estimated with intraclass correlation coefficients (ICCs). The inter-rater reliabilities were poor (ICC < 0.50). The scale anchoring varied between experts, and the variance of scores was low. There were no systematic differences in inter-rater reliability between LP and SV traits. Future studies should determine whether the inter-rater reliabilities may be increased by a more precise definition of the scores within each trait to improve the absolute agreement between experts, by a more uniform scale anchoring between experts, and by decreasing the number of scale items. However, considering the inherent limitations of the human eye in observing high-speed movement, the use of a field-applicable kinematic measurement system may support breeding experts in the appraisal of gait quality traits in the future.     

A Note on the Heritability of Reactivity Assessed at Field Tests for Danish Warmblood Horses

Temperament traits in horses, especially reactivity, are an important trait in relation to human–horse accidents and the welfare of the horses. However, so far, temperament is often not included in many horse breeding programs. Most of the behavioral genetic studies in horses have been based on indirect indications of a sire effect and not on estimations of the heritability of temperament traits. Therefore, the aim of this study was to estimate the heritability of behavior reactions related to reactivity observed in a practical situation, that is, during the evaluation of the conformation of the horse at field tests. The study included 323 3-year-old Warmblood horses. Data were analyzed according to an animal model, and the estimation was based on restricted maximum likelihood. Results showed a low (0.17) heritability of reactivity. Probably because of the limited number of horses in the study, a high standard error was untainted. Nevertheless, results suggested a genetic variation of reactivity when assessed at field tests, but further research is needed before reactivity can be incorporated as a selection criteria into a breeding program.     

Genetic analysis of 'breeding field test status' in Icelandic horses

Genetic evaluation of Icelandic horses is currently based on results from breeding field tests where riding ability and conformation of the horses are evaluated over the course of 1-2 days. Only a small part of registered horses attend these field tests, and it can be assumed that these are not a random sample of the population. In this study, the trait test status was introduced, describing whether a horse was assessed in a breeding field test. This trait was analysed to find out whether it has a genetic variation and how it correlates genetically to other traits in the breeding goal. Breeding field test data included 39,443 mares born in Iceland in 1990-2001, of which 7431 were assessed in the period 1994-2007. The trait was defined in relation to age, gender and stud of horses. Variance and covariance components were estimated using the Markov Chain Monte Carlo method by applying the Gibbs sampler procedure in the DMU program. Three multivariate analyses were performed where the test status trait was analysed with breeding field test traits. Animal models and sire models were applied. Based on estimated heritabilities (0.51-0.67) and genetic correlations (0.00-0.87), the test status trait showed significant genetic variation and was strongly correlated to some traits. The test status trait reflects preselection in the breeding field test traits and should be included in the genetic evaluation to enhance the procedure, reduce selection bias and increase accuracy of the estimation.     

Genetic parameters estimation in an Italian horse native breed to support the conversion from agricultural uses to riding purposes

Horses are nowadays mainly used for sport and leisure purposes, and several local breeds, traditionally used in agriculture, are exposed to the risk of extinction. The long-term survival of local horse breeds depends on strategies to both monitor their genetic diversity and to find their sustainable role in the equine market. Thus, several local horse breeds need to adapt their breeding objective to allow a modernization process. The Bardigiano is an example of such horse breeds; we, therefore, studied the existing evaluation protocol from a genetic standpoint to assess the protocol's suitability to convert the Bardigiano from an agricultural to a riding horse. To this end, we estimated genetic parameters for four conformation measurements, ten grading traits and 23 linear traits. For conformation measurements, the heritabilities ranged from 0.31 for cannon bone circumference to 0.63 for height at withers. For conformation and attitude grading traits, the highest heritability (0.34) was estimated for development and the lowest (0.09) for gaits. The heritabilities for linear traits ranged from 0.05 for the leg straightness to 0.32 for the coat colour. Genetic correlations between linear traits and corresponding grading traits varied considerably, ranging from −0.42 to 0.98. This study showed that the current evaluation protocol in the Bardigiano horse is appropriate for genetic evaluation. Genetic parameters estimation can, in turn, be used to develop novel breeding values to help this conversion. Our study paves the way to optimize the Bardigiano horse breeding programme, and it may help several other local horse breeds experiencing similar issues.     

Genetic correlations between performance traits and radiographic findings in the limbs of German Warmblood riding horses

Results of mare performance tests in the field (MPT-F) of 10,949 mares, mare performance tests at station (MPT-S) of 1,712 mares, and inspections of horses intended for sale at riding horse auctions (AU) of 4,772 horses were used to investigate genetic correlations between corresponding performance traits. Mare performance tests were held in 1995 to 2004 and auction inspections in 1999 to 2004. Scores on a scale from 0 to 10 were given for gaits under rider (walk, trot, canter), rideability (evaluated by judging commission and test rider), free-jumping (ability, style, total), and character. Radiography results of 5,102 Hanoverian Warmblood horses were used to investigate genetic correlations between performance traits and particular radiographic findings. The radiographic findings included osseous fragments in fetlock and hock joints, deforming arthropathy in hock joints, and distinct radiographic findings in the navicular bones, which were analyzed as binary traits, and radiographic appearance of the navicular bones, which was analyzed as a quasi-linear trait. Genetic parameters were estimated multivariately in linear animal models with REML using information on the horses radiographed and their contemporaries (n = 18,609). Heritability of performance traits ranged between 0.14 and 0.61, and heritability of radiographic findings between 0.14 and 0.33. Additive genetic correlations between corresponding performance traits were close to unity for MPT-F and MPT-S, ranged from 0.81 to 0.90 for MPT-F and AU, and were 0.75 to 0.92 for MPT-S and AU. Genetic correlations between performance and radiography results were mostly close to zero. Indications of negative additive genetic correlations were observed for deforming arthropathy in hock joints and canter, rideability evaluated by test rider, jumping traits and character, and osseous fragments in hock joints and character. Selection of horses for radiological health of their limbs will assist further genetic improvement of the performance of young Warm-blood riding horses.     

Effect of different head–neck positions on physical and psychological stress parameters in the ridden horse

Different head–neck positions (HNPs) are used in equestrian sports and are regarded as desirable for training and competition by riders, judges and trainers. Even though some studies have been indicative of hyperflexion having negative effects on horses, this unnatural position is frequently used. In the present study, the influence of different HNPs on physical and psychological stress parameters in the ridden horse was investigated. Heart rate (HR), heart rate variability (HRV) and blood cortisol levels were measured in 18 horses. Low frequency (LF) and high frequency (HF) are power components in the frequency domain measurement of HRV which show the activity of the sympathetic and parasympathetic nervous system. Values were recorded at rest, while riding with a working HNP and while riding with hyperflexion of the horse's head, neck and poll. In addition, rideability and behaviour during the different investigation stages were evaluated by the rider and by an observer. Neither the HR nor the HRV showed a significant difference between working HNP (HR = 105 ± 22/min; LF/HF = 3.89 ± 5.68; LF = 37.28 ± 10.77%) and hyperflexion (HR = 110 ± 18; LF/HF = 1.94 ± 2.21; LF = 38.39 ± 13.01%). Blood cortisol levels revealed a significant increase comparing working HNP (158 ± 60 nm ) and hyperflexion (176 ± 64 nm , p = 0.01). The evaluation of rider and observer resulted in clear changes of rideability and behavioural changes for the worse in all parameters collected between a working HNP and hyperflexion. In conclusion, changes of the cortisol blood level as a physical parameter led to the assumption that hyperflexion of head, neck and poll effects a stress reaction in the horse, and observation of the behaviour illustrates adverse effects on the well‐being of horses during hyperflexion.     

Morphological analysis and effect of selection for conformation in the Noriker draught horse population

To evaluate the breeding program in the Austrian Noriker draught horse population, which is mostly based on conformation, 31 body measurements from 497 horses in seven breeding areas of Austria were recorded. In addition, the data of 2376 horses (the current breeding population) from the studbook, containing 10 scored conformation traits and 4 body measurements per individual, were analysed. We assumed breeding regions, coat colour strains and breeding classes assigned according to conformation evaluation to be the main factors in phenotypic diversity of this Austrian draught horse breed. Significant differences and distances were found for all of these factors. Whereas differences between breeding areas mostly are due to housing conditions and feeding strategies, the breeding classes provide a very distinct picture of the current trends in Noriker breeding. Breeding organisations favour a long and high Noriker draught horse, a tendency that is the same for all departments. Heritability estimates for morphological traits vary from 0 to 0.67, and from 0.08 to 0.37 for linear type traits.     

Improvement in the national genetic evaluation of warmblood riding horses by including information from related studbooks

Abstract

Young horse performance test data from two warmblood riding horse populations, Norwegian warmblood (NWB) and Swedish warmblood (SWB), were analysed to examine whether including information from a related studbook would increase the accuracy of the genetic evaluations within a population. Ten conformation and performance traits from 31,588 horses, 774 NWB and 30,814 SWB were analysed separately and jointly using single trait animal models. Heritabilities were moderate to high, and varied from 0.15 (conformation, joint data) to 0.74 (jumping technique, NWB data). The genetic similarity (GS) between populations was 31%, with the SWB, as expected given the size of the populations, contributing most to the GS (98%). Genetic correlations between the same traits in the two populations were 0.43–0.90 but with large standard errors (0.2–0.3). Including information from the other population increased the average accuracy of estimated breeding values for common stallions, on average 4% for SWB and 110% for NWB.     

Overview of genetic evaluation in dairy cattle

It is costly and time‐consuming to carry out dairy cattle selection on a large experimental scale. For this reason, sire and cow evaluations are almost exclusively based on field data, which are highly affected by a large array of environmental factors. Therefore, it is crucial to adjust for those environmental effects in order to accurately estimate the genetic merits of sires and cows. Index selection is a simple extension of the ordinary least squares under the assumption that the fixed effects are assumed known without error. The mixed‐model equations (MME) of Henderson provide a simpler alternative to the generalized least squares procedure, which is computationally difficult to apply to large data sets. Solution to the MME yields the best linear unbiased estimator of the fixed effects and the best linear unbiased predictor (BLUP) of the random effects. In an animal breeding situation, the random effects such as sire or animal represent the animal's estimated breeding value, which provides a basis for selection decision. The BLUP procedure under sire model assumes random mating between sires and dams. The genetic evaluation procedure has progressed a long way from the dam‐daughter comparison method to animal model, from single trait to multiple trait analysis, and from lactational to test‐day model, to improve accuracy of evaluations. Multiple‐trait evaluation appears desirable because it takes into account the genetic and environmental variance‐covariance of all traits evaluated. For these reasons, multiple‐trait evaluation would reduce bias from selection and achieve a better accuracy of prediction as compared to single‐trait evaluation. The number of traits included in multiple‐trait evaluation should depend upon the breeding goal. Recent advances in molecular and reproductive technologies have created great potential for quantitative geneticists concerning genetic dissection of quantitative traits, and marker‐assisted genetic evaluation and selection.     

Estimation of genetic parameters and prediction of breeding values for multivariate threshold and continuous data in a simulated horse population using Gibbs sampling and residual maximum likelihood

Simulated horse data were used to compare multivariate estimation of genetic parameters and prediction of breeding values (BV) for categorical, continuous and molecular genetic data using linear animal models via residual maximum likelihood (REML) and best linear unbiased prediction (BLUP) and mixed linear-threshold animal models via Gibbs sampling (GS). Simulation included additive genetic values, residuals and fixed effects for one continuous trait, liabilities of four binary traits, and quantitative trait locus (QTL) effects and genetic markers with different recombination rates and polymorphism information content for one of the liabilities. Analysed data sets differed in the number of animals with trait records and availability of genetic marker information. Consideration of genetic marker information in the model resulted in marked overestimation of the heritability of the QTL trait. If information on 10,000 or 5,000 animals was used, bias of heritabilities and additive genetic correlations was mostly smaller, correlation between true and predicted BV was always higher and identification of genetically superior and inferior animals was - with regard to the moderately heritable traits, in many cases - more reliable with GS than with REML/BLUP. If information on only 1,000 animals was used, neither GS nor REML/BLUP produced genetic parameter estimates with relative bias 50% for all traits. Selection decisions for binary traits should rather be based on GS than on REML/BLUP breeding values.     

Influence of imported sport horses on the genetic evaluation of Swedish Warmblood stallions

There is substantial international influence on the Swedish Warmblood (SWB) sport horse population. The SWB Association suspects that imported horses are pre-selected based on their anticipated performance level, which could lead to biased estimated breeding values (EBVs) for stallions. This study examined different strategies to handle records for imported horses in the genetic evaluation. The stallions were evaluated for 10 traits using 3 different EBV estimation methods that were compared based on ranking comparisons of stallions, accuracy, correlations and absolute differences between EBVs. The results showed that the stallions’ EBVs were affected by imported offspring which, as a group, had higher average scores than horses born in Sweden. Sire EBVs differed by up to 0.6 genetic standard deviation of the trait between methods for stallions with >50% imported offspring. Excluding imported offspring lowered the accuracies and caused larger re-ranking compared with including a fixed effect of origin in the model.     

Breed Differences in Dopamine Receptor D4 Gene (DRD4) in Horses

Genetic polymorphisms in genes related to neurotransmitters or hormones affect personality or behavioral traits in many animal species including humans. In domestic animals, the allele frequency of such genes has been reported to be different among breeds and it may account for breed differences in behavior. In this study, we investigated breed differences in horses in the dopamine receptor D4 gene (DRD4), which has been reported to affect horse personality. We collected samples from seven horse breeds including those native to Japan and Korea, and compared the sequence of the DRD4 exon3 region among these breeds. We found that there were two types of polymorphisms (VNTR and SNPs) in the exon3 region, and some of them seemed to be breed-specific. In addition, we found that the allele frequency of G292A, reported to be associated with horse personality, differed greatly between native Japanese horses and Thoroughbred horses. The frequency of the A allele which is associated with low curiosity and high vigilance, was much lower in native Japanese horses (Hokkaido, 0.03; Taishu, 0.08) than in Thoroughbreds (0.62). This difference may account for breed differences in personality or behavioral traits. Further studies of the function of these polymorphisms and their effect on behavior are indicated.     

Breakeven prices for recording of indicator traits to reduce the environmental impact of milk production

A breeding scheme using genomic selection and an indicator trait for environmental impact (EI) was studied to find the most effective recording strategy in terms of annual monetary genetic gain and breakeven price for the recording of indicator traits. The breakeven price shows the investment space for developing a recording system for an indicator trait. The breeding goal consisted of three traits – milk production, functional trait and environmental impact – with economic values of €83, €82 and €?83, respectively. The first scenario included only breeding goal traits and no indicator traits (NoIT). The other scenarios included all three breeding goal traits and one indicator trait (IT) for EI. The indicator traits were recorded on a large scale (stayability after first lactation and stature), medium scale (live weight and greenhouse gases (GHG) measured in the breath of the cow during milking) or small scale (residual feed intake and total enteric methane measured in a respiration chamber). In the scenario with stayability, the genetic gain in EI was over 11% higher than it was in NoIT. The breakeven price of recording stayability was €8 per record. Stayability is easy to record in the national milk recording system, and its use as an indicator trait for EI would not generate any additional recording costs. Therefore, stayability would be a good indicator trait to use to mitigate EI. The highest genetic gain in EI (23% higher compared to NoIT) was achieved when the GHG measured in the breath of the cow was used as indicator trait. The breakeven price for this indicator trait was €29 per record in the reference population. Ideally the recording of a specific indicator trait for EI would take place when: (i) the genetic correlation between the IT and EI is high; and (ii) the number of phenotypic records for the indicator trait is high enough to achieve a moderately high reliability of direct genomic values.     

Genetic Testing and the Future of Equine Genomics

Genetic tests are now available for most coat color traits and many simple Mendelian diseases in the horse. The horse genome sequence was completed in 2006, with sequence available online to researchers in June of that year. This wealth of new data has already been exploited to provide some very powerful tools that can be used to define more simply inherited diseases in horses at the molecular level, as well as potentially more complex diseases. With the continued availability of genetic testing in horses, veterinarians, and particularly reproduction experts, need to have a good basic understanding of these tests to assist their clients in making informed breeding decisions.     

Behavior Observation During Conformation Evaluation at a Field Test for Danish Warmblood Horses and Associations with Rideability and Performance Traits

Reactivity in horses, defined as a state of high arousal, has an impact on the daily handling and welfare of horses and can have an impact on the risk of causing human injuries. Behavior tests have been developed to assess reactivity, but these tests are difficult to apply in practice. The objectives of this study were to investigate how reactivity measured in a practical situation associates with rideability and performance and to explore the association between the measured reactivity and reactivity assessed by the horse's owner. A total of 234 Danish Warmblood females, 3 years of age, were videotaped and scored for reactivity during the evaluation of their conformation, and a questionnaire was completed by the owners. Associations between reactivity and performance traits were investigated by computing partial correlations (Pearson, r_p). A low negative correlation was found between rideability and reactivity (r_p = −0.16, P = .02) and between reactivity and free jumping (r_p = −0.14, P = .03). These results suggest that highly reactive horses received lower grades in rideability and free jumping. However, no association with performance traits in dressage was found. Likewise, low but significant association was found between reactivity and ratings from owners (r_p = 0.15, P = .02), indicating that horses considered to be nervous by their owners also were scored as reactive. In conclusion, it appears possible to measure reactivity in a practical situation. This study also concluded low negative associations between reactivity and the two performance traits rideability and free jumping.     

Economic weights of production and functional traits for Holstein‐Friesian cattle in Hungary

A bio‐economic model was used to estimate economic values of 15 milk production, functional, growth and carcass traits for Hungarian Holstein‐Friesian cattle. The calculations were carried out for the situation in Hungary from 2000 to 2007, assuming no production quotas. The marginal economic values were defined as partial derivatives of the profit function with respect to each trait in a production system with dairy cow herds and with sales of surplus male calves. The economic weights for maternal and direct components of traits were calculated multiplying the marginal economic values by the number of discounted expression summed over a 25‐year investment period for 2‐year‐old bulls (candidates for selection). The standardized economic weight (economic weight × genetic standard deviation) of the trait or trait component expressed as percentage of the sum of the standardized economic weights for all traits and trait components represented the relative economic importance of this trait or trait component. The highest relative economic importance was obtained for milk yield (25%), followed by productive lifetime of cows (23%), protein yield and the direct component of a cow’s total conception rate (9% each), the maternal effect of the total conception rate of cows and the somatic cell score (approximately 7% each), fat yield (5%) and mature weight of cows and daily gain in rearing of calves (approximately 4% each). Other functional traits (clinical mastitis incidence, calving difficulty score, total conception rate of heifers and calf mortality) reached a relative economic importance between 0.5% and 2%. Birth weight and dressing percentage were least important (<0.5%). Based on these results, the inclusion of productive lifetime and cow fertility in the breeding programme for Holstein‐Friesian cattle in Hungary is advisable.