Characterization of Populations of Rhizoctonia solani in Paddy Rice Fields in Côte d'Ivoire

ABSTRACT Isolates of Rhizoctonia solani were obtained from plant and soil samples that had been systematically collected in a field experiment in C?te d'Ivoire to study the diversity of the pathogen and the influence of three different rice rotations on the pathogen population. Characterization by morphology, anastomosis testing, pathogenicity testing, and restriction fragment length polymorphisms (RFLPs) of AT-rich DNA (AT-DNA) showed that there were no differences in isolates from different experimental plots, suggesting that the soil as well as the plant population of the fungus was indistinguishable throughout the experiment and was not influenced by crop rotation. Analysis of AT-DNA showed that the isolates obtained from plant material and one from soil shared a distinct banding pattern, identical with the AT-DNA RFLP obtained for the reference strain of anastomosis group 1 (AG-1). The remaining soil isolates produced a consistent RFLP pattern that was distinct from that of the plant isolates. Morphological characterization of isolates produced two major clusters consisting of the same groups of isolates as found by AT-DNA RFLP. Diversity in morphological characters was much higher in plant than in soil isolates and indicated that the population might consist of several clones. Anastomosis testing revealed that soil as well as plant isolates were able to fuse with the tester strain of AG-1. Significant differences in disease severity were observed between the two groups of isolates in pathogenicity tests on rice plants, with plant isolates being distinctively more virulent.     

Epidemiology of flavescence dorée in vineyards in northwestern Italy

ABSTRACT A serious outbreak of flavescence dorée (FD) was reported in Piemonte, northwestern Italy, in 1998, and since then, the disease has compromised the economy of this traditional wine-growing area, even following the application of compulsory insecticide treatments to control Scaphoideus titanus, the vector of the causal phytoplasma. Affected vines show severe symptoms, varying according to the cultivar, and are rogued to reduce disease spread. Following winter and pruning, a previously affected vine may appear symptomless and free of phytoplasmas in its aerial as well as its root system, even by nested-polymerase chain reaction assays. Such plants are considered to be "recovered". Since 1998 homogenous data on the incidence of newly infected, healthy, or recovered plants productivity, presence of vectors, and treatment schedules have been collected in seven severely affected vineyards of southern Piemonte for 5 years (1999 to 2003). Infectivity and recovery rates were also calculated each year. From 1999 to 2003, the average number of healthy plants decreased and the numbers of recovered plants and those with symptoms increased. Productivity of recovered vines, although lower than that of healthy ones, was always higher than that of vines with symptoms and was not influenced by the time elapsed from date of recovery. The relationships between the ln-transformed number of vectors trapped in the vineyards the previous year and the infection and the recovery rates were fitted by an exponential (R(2) = 0.95) and an asymptotic (R(2) = 0.93) model, respectively.     

Occurrence of boscalid resistance in cucumber powdery mildew in Japan and molecular characterization of the iron–sulfur protein of succinate dehydrogenase of the causal fungus

A total of 74 mass isolates of cucumber powdery mildew fungus (Podosphaera xanthii) were collected from commercial greenhouses with a history of boscalid use in Ibaraki Prefecture, Japan, and tested in a leaf disk assay for their sensitivity to boscalid. The mildew development of 40 of 74 isolates and five sensitive reference isolates on the disks was completely suppressed at 5 μg boscalid/ml. The minimum inhibitory concentrations (MIC) for the remaining 34 isolates were 50 μg/ml or higher, and 21 of these isolates also grew well at 500 μg/ml. Six single-spore isolates were resistant to boscalid with MIC values higher than 500 μg/ml; four of these were moderately resistant (MR), and two were very highly resistant (VHR) isolates. The growth of MR isolates was almost completely suppressed at 500 μg/ml, whereas two VHR isolates grew vigorously at 500 μg/ml. In foliar inoculation tests of potted cucumber plants, the efficacy of boscalid (500 μg/ml) against both MR and VHR isolates was very low. Partial DNA fragment of the iron–sulphur protein subunit (SdhB) gene of succinate dehydrogenase was PCR-amplified from five sensitive and five resistant isolates and directly sequenced, revealing that VHR isolates possess a substitution from a highly conserved histidine (CAT) to tyrosine (TAT) in a third cysteine-rich center of a putative SdhB, whereas MR isolates so far have not been found to have such substitution in SdhB.     

Sources of inoculum and reappearance of spot blotch of wheat in rice–wheat cropping

A study was undertaken to examine the main source of inoculum of Bipolaris sorokiniana responsible for its reappearance in rice–wheat cropping regions of eastern India. Soil samples were collected at monthly intervals during April–October in the years 2000 and 2001 from fields having rice–wheat cropping. Bipolaris sorokiniana conidia were isolated and their viability was found to decline sharply with the onset of flooding in the month of August. In contrast to 82% in April, viability was 4% and <1% in August and September, respectively. Viable conidia were multiplied in the laboratory and inoculated on to susceptible cv. Sonalika under controlled conditions for test of pathogenicity. Appearance of symptoms typical to spot blotch were recorded after 7 days. Twenty-two different species (weeds and grasses) normally found to be associated with rice–wheat fields were tested for the presence of B. sorokiniana to evaluate their possible role as alternative hosts. Only three species, i.e. Setaria glauca, Echinochloa colonum and Pennisetum typhoids, were found to naturally harbour B. sorokiniana. Isolates from these hosts were tested for pathogenicity and also for their possible spread to wheat. When reisolated from these hosts, the pathogen did not infect wheat. Seeds of 25 different wheat genotypes were tested for B. sorokiniana infection. All genotypes were infected and the incidence of infection varied from 26% to 86%. Five isolates of wheat and one isolate from each of the three species (S. glauca, E. colonum and P. typhoids) were subjected to RAPD analysis. Two broad clusters were formed, suggesting that the wheat isolates were different from the isolates originating from other hosts. The results indicate that seeds are the most important source of inoculum for the reappearance of spot blotch of wheat in rice-wheat cropping systems in eastern India.     

Genetics of Host Specificity in Epichloë typhina

ABSTRACT Epichlo? typhina perennially and systemically infects grass plants, causing choke disease in which maturation of host inflorescences is suppressed. In seedling-inoculation tests, isolate E8 from perennial ryegrass established and maintained infection in this host but not in orchardgrass. In contrast, isolates E469, E2466, and E2467 from orchardgrass varied in infection frequency and stability in orchardgrass, but all were unable to establish stable infections in perennial ryegrass. To investigate the genetics of host specificity, isolate E8 was crossed with each of the isolates from orchardgrass. Seedlings of parental host species were inoculated with F(1) progeny, and the frequencies of seedling infection and stability in adult plants were assessed. In the E8 x E2466 cross, the F(1) progeny exhibited a wide range of infection frequency and stability in each parental host. In crosses E8 x E469 and E8 x E2467, where the orchardgrass-derived parents infected 5 to 13% of inoculated perennial ryegrass seedlings, the distributions of infection frequencies for the F(1) progeny wereskewed toward levels comparable to that of the parent from perennial ryegrass. In all crosses, most progeny had low frequencies of infection in orchardgrass. However, transgression was evident in a cross of E8 with E469, an isolate that infected orchardgrass seedlings at a low frequency (2 to 3%). The E8 x E469 cross had a few F(1) progeny that infected orchardgrass at high efficiency (up to 81%). A Spearman rank correlation applied to the E8 x E2466 progeny indicated a significant negative correlation between infection frequencies in perennial ryegrass and orchardgrass. Also, there was a significant correlation of infection frequency and stability in perennial ryegrass but not in orchardgrass. To test whether only a few genes governed infection frequency in perennial ryegrass, an E8 x E2466 F(1) progeny (designated E386.04), which had intermediate compatibility with this host, was backcrossed to E8. The progeny of this backcross exhibited a distribution of infection frequencies in perennial ryegrass between that of E386.04 and the backcross parent, suggesting that multiple genes may determine compatibility at the seedling infection stage. The results of these experiments indicated multiple genetic determinants of compatibility or incompatibility with each host, with intermediate or high heritability.     

Characterisation of benzimidazole resistance of Cercospora beticola in Serbia using PCR-based detection of resistance-associated mutations of the β-tubulin gene

A survey to detect and characterise benzimidazole resistance within populations of Cercospora beticola in Serbia was performed. From 52 field isolates collected from sugar beet and beet root, only eight were found to be benzimidazole-sensitive based on the inhibition of mycelial growth by discriminatory concentrations of carbendazim and thiophanate-methyl. Sensitivity tests revealed the presence of three resistant phenotypes among the tested isolates: high-resistance (HR), low-resistance (LR) and moderate-resistance (MR). The benzimidazole resistant isolates were characterised based on the DNA sequence of the β-tubulin gene and temperature sensitivity. The HR isolates showed no temperature sensitivity regardless of carbendazim concentration, whereas the LR and MR isolates were sensitive at lower temperatures. Analysis of the β-tubulin gene sequence revealed two amino acid replacements in the benzimidazole-resistant isolates of C. beticola. One was a glutamic acid to alanine change at position 198 (codon GAG to GCG) that was identified in HR isolates; this mutation has previously been reported to be associated with the development of benzimidazole resistance in C. beticola. The second replacement was a novel point mutation of phenylalanine (TTC) to tyrosine (TAC) at position 167, identified in low and moderate benzimidazole-resistant isolates, sharing a single LR/MR β-tubulin genotype. A diagnostic PCR-RFLP assay utilising a BsaI restriction site present in the benzimidazole sensitive and LR/MR genotypes but absent in the HR genotype was developed for the routine detection of high resistance. A mutation-specific PCR assay was developed for the diagnosis of LR/MR genotype based on a mutation from T to A at codon 167, which is unique to this genotype.     

Evidence of the Presence of Two Serotypes of Rice Yellow Mottle Sobemovirus in Côte d'Ivoire

Serological variability of isolates of rice yellow mottle virus (RYMV) collected in Côte d'Ivoire was assessed by immunological tests with polyclonal and monoclonal antibodies (MAbs). Two serotypes (named S1 and S2) were distinguished. The S1 isolates had common epitopes which were absent in S2 isolates, whereas they lacked epitopes shared by S2 isolates. There was no evidence of S1 and S2 mixtures, although S1 and S2 isolates were sometimes found in nearby sites. Serotype S2 was more prevalent in Côte d'Ivoire than S1, and was in a large majority in the centre and the south of the country. By contrast, S1 occurred more widely in the north. S1 isolates were also found in neighbouring countries at the north of Côte d'Ivoire. In tests with monoclonal antibodies, three additional serotypes were found, one in West-Africa and two in East-Africa. Using the primers developed against an S2 isolate from Côte d'Ivoire, all S2 but not the S1 isolates were transcribed and amplified by RT-PCR, and another set of primers was developed to amplify S1 isolates. S1 and S2 have different biological properties, and competition between isolates of the two strains was apparent resulting in S2 dominance over S1. This was assessed using S1 and S2 strain specific MAbs, and it occurred whatever the pattern of inoculation or the rice variety tested. Differences in pathogenicity and virus titre did not account for strain competition, as there was no relation between symptom severity, virus content and serotype of the isolates in Oryza sativa indica cultivars.     

Hand pulling of Striga hermonthica in pearl millet∗

Abstract

Before 1960, Panama disease (fusarium wilt) was the most important disease in the banana export trades. Although the importance of Panama disease decreased after the Cavendish cultivars replaced Gros Michel, recent outbreaks have renewed interest in this problem. Race 4 affects cultivars of the Cavendish subgroup in the subtropics, as well as race 1 and race 2 suscepts. It has caused concern in the tropically based export trades which depend almost entirely on the Cavendish clones. Attention is also drawn to affected non‐exported bananas which are important cash crops or staple foods. Although they are not as well documented as those on the Cavendish subgroup, epidemics of the disease on non‐exported bananas are far more important.     

Characterization of moderate resistance to QoI fungicides in Pestalotiopsis longiseta and polymorphism in exon–intron structure of cytochrome b gene

Qo inhibitor (QoI) fungicides are used to control gray blight caused by Pestalotiopsis longiseta in Japanese tea cultivation. However, field isolates of P. longiseta highly resistant to QoI fungicides were found in 2008, resulting in failure of QoI fungicidal control. This resistance was attributed to a mutation in the cytochrome b gene (cytb) in which alanine was substituted for glycine at position 143 (G143A). In 2009–2010, we detected field isolates that had an intermediate reaction between sensitive and resistant isolates in a preliminary assay. These isolates showed intermediate sensitivity to azoxystrobin and kresoxim-methyl on PDA plates. The intermediate reaction to azoxystrobin was also confirmed on detached tea leaves. Consequently, they were considered moderately resistant to QoI fungicides. Nucleotide sequencing of cytb showed that moderate resistance correlated with a single point mutation; leucine was substituted for phenylalanine at amino acid position 129 (F129L). Sequence analysis also revealed two types of cytb, with or without an intron between codons 131 and 132, in P. longiseta. F129L and G143A mutations were detected in both types of cytb according to their QoI resistance. This result suggests that G143A and F129L mutations have each occurred at least twice in the P. longiseta population.     

Phenotypic and genotypic structure of Phytophthora infestans populations on tomato and potato in the North of Thailand in 2000–2002

A total of 80 single–lesion isolates of Phytophthora infestans were collected from tomatoes and potatoes in several locations in Chiang Mai and Tak provinces in 2000–2002. These isolates were analyzed for mating type, metalaxyl sensitivity, mitochondrial DNA (mtDNA) haplotype RFLP pattern as determined by probe RG57, and for microsatellite markers. All isolates were A1 mating type. Isolates from tomato were usually sensitive to metalaxyl, but isolates from potato were usually resistant to metalaxyl. With one exception, all tomato isolates were related to the US-1 clonal lineage. With two exceptions, all potato isolates were related to two European lineages. In these two provinces, the populations of P. infestans on tomatoes are clearly different from those on potatoes.     

Seasonal progression of leaf rust in ‘Niagara Rosada’ grapevine in a biannual crop system in Brazil

The soil-borne fungus Fusarium oxysporum can cause both Fusarium yellows and Fusarium root rot diseases with severe yield losses in cultivated sugar beet. These two diseases cause similar foliar symptoms but different root response and have been proposed to be caused by two distinct F. oxysporum formae speciales. Fusarium yellows, caused by F. oxysporum f. sp. betae, presents vascular discoloration, whereas Fusarium root rot, due to F. oxysporum f. sp. radicis-betae, appears as black rot visible on the root surface. The aim of this work was to study the host-pathogen interaction between sugar beet lines and isolates originally characterized as Fusarium oxysporum f. sp. betae. Eight susceptible sugar beet lines, selected by the USDA-ARS (US) and UNIPD (University of Padova, Italy) breeding programs, were inoculated with three different isolates of F. oxysporum f. sp. betae, the causal agent of Fusarium yellows, representing different genetic groups. All inoculated lines developed symptoms, but severity, expressed as area under the disease progress curve (AUDPC), differed significantly (P < 0.05) among lines. Two lines from UNIPD, 6 and 9, were the most susceptible to the disease, whereas the other lines showed similar levels. The three isolates of F. oxysporum f. sp. betae differed significantly (P < 0.05) in disease severity. Five weeks after inoculation the plants were harvested and roots examined. Surprisingly, severe root rot was observed in the susceptible UNIPD lines when inoculated with all three isolates, while this symptom was never observed in the USDA germplasm. The development of this disease symptom obviously depends on the plant genotype.     

Role of weed hosts and the western flower thrips, Frankliniella occidentalis, in epidemiology of Tomato spotted wilt virus in the Çukurova region of Turkey

Surveys of thrips and Tomato spotted wilt virus (TSWV) on weeds were conducted in the eastern Mediterranean region of Turkey during the years 2004–2006. Thrips species were collected by vigorously shaking weedy plants into a white container for 15 sec. Plant material collected during field surveys and plants which were used for mechanical inoculation of TSWV, were tested by DAS–ELISA. The weed species Ranunculus muricatus, Melilotus officinalis, Sinapis arvensis and Portulaca oleracea were used for the virus transmission experiments in an enclosed high plastic tunnel and in cage experiments. Western flower thrips, Frankliniella occidentlis (Pergande) (Thysanoptera: Thripidae), was the most common thrips, inhabiting 80 of the 82 weed species sampled. Adults of F. occidentalis and thrips larvae were significantly more abundant on S. arvensis than on the other weed species sampled (P<0.05). Adult and larval thrips showed peak densities on most weeds in April or May. Summer annual weeds were not good hosts for reproduction of the thrips. A total of 90 samples from 17 plant species belonging to 11 plant families were ELISA positive for TSWV. No TSWV was detected on 65 weed species belonging to 26 plant families. High numbers of plant samples infected by TSWV were obtained in P. oleracea (21 samples) and in R. muricatus (15 samples). In field surveys symptoms of TSWV were detected on only R. muricatus. Incidence of the TSWV on weeds ranged between 5% and 25%. Transmission rates of TSWV by F. occidentalis to the weeds ranged from 33% to 83% in the pepper plastic tunnel and cage experiments.     

Evidence for the involvement of Aphanomyces cochlioides and Pythium spp. in ‘girth scab’ disease of sugar beet in Bavaria

Journal of Plant Diseases and Protection - The term ‘girth scab’ describes a chronic disease of sugar beet roots (Beta vulgaris ssp. vulgaris) for which the causes still remain unclear....     

Cuticular penetration of β-cypermethrin in insecticide-susceptible and resistant strains of Bactrocera dorsalis

Semi-thin sectioning and transmission electron microscope techniques were employed to investigate the cuticle thickness, integument structure, and fat body of larvae from susceptible and resistant strains of Bactrocera dorsalis. The results showed that the cuticle of β-cypermethrin-resistant strains (25.96 ± 1.00 μm) was thicker than that of susceptible strains (19.36 ± 0.82 μm). The number of chitin layers in the endocuticle of β-cypermethrin-resistant strains (98.00 ± 3.61 layers) was more than that in susceptible strains (75.67 ± 2.40 layers). Compared with susceptible strains, the laminated structure of the chitin layers in the endocuticle of resistant strains revealed higher density and more distinctive structure, and the interspace of epidermal cells was thicker. Fat body in the resistant insects contained more fat granules than those in susceptible insects. Moreover, HPLC analysis showed that the cuticular penetration of β-cypermethrin into larvae of resistant strains was slower than that of susceptible strains. In addition, the metabolism of β-cypermethrin in resistant strains was faster than that in susceptible strains, indicating that the resistant strains could enhance detoxification metabolism. These results indicated that cuticle thickness, fat body, laminated structure of the chitin layers, and interspace of epidermal cells might be correlated with cuticular penetration between susceptible and resistant strains, suggesting that the resistant strains could decrease the rate of penetration of insecticide into the internal cavity.     

Cigar‐end disease of banana in the southern region of Oman (Dhofar)

Abstract

Cigar‐end disease of banana, Verticillium theobromae has become apparent in the southern region of Oman, and is prevalent under warm and humid conditions. Benomyl and thiabendazole were found to effectively control V. theobromae in artificially induced cigar‐end disease.     

Herbicides in Cotton—Combinations of Trifluralin with Other Products

Abstract

Results are given of a trial in which trifluralin, incorporated in the soil, at rates of 0.5 and 0.75 kg/ha, was combined with fluometuron at 1.6 kg/ha, and with prometryne at 1.0 kg/ha, both incorporated, pre- and post-em. and with noruron + MSMA (1.0:2.2) at 1.7 kg/ha post-em.

Best results were given by incorporated treatments of trifluralin + fluometuron (0.5 + 1.6) kg/ha, or by trifluralin incorporated at 0.5 or 0.75 kg/ha + fluometuron applied pre-em. at 1.6 kg/ha, or by trifluralin incorported at 0.75 kg/ha + prometryne applied pre-em. at 1.0 kg/ha.

It is recommended that noruron + MSMA (1.0:2.2) at 1.7 kg/ha be applied post-em. as a complementary treatment to trifluralin at 0.5 kg/ha in fields where Cyperus spp. are a problem.     

Variation of soil physical-chemical characteristics in salt-affected soil in the Qarhan Salt Lake,Qaidam Basin

Soil salinization has adverse effects on the soil physical-chemical characteristics.However,little is known about the changes in soil salt ion concentrations and other soil physical-chemical characteristics within the Qarhan Salt Lake and at different soil depths in the surrounding areas.Here,we selected five sampling sites(S1,S2,S3,S4,and S5)alongside the Qarhan Salt Lake and in the Xidatan segment of the Kunlun Mountains to investigate the relationship among soil salt ion concentrations,soil physical-chemical characteristics,and environmental variables in April 2019.The results indicated that most sites had strongly saline and very strongly saline conditions.The main salt ions present in the soil were Na⁺,K⁺,and Cl^-.Soil nutrients and soil microbial biomass(SMB)were significantly affected by the salinity(P<0.05).Moreover,soil salt ions(Na⁺,K⁺,Ca2+,Mg²⁺,Cl^-,CO₃^2-,SO₄^2-,and HCO₃^-)were positively correlated with electrical conductivity(EC)and soil water content(SWC),but negatively related to altitude and soil depth.Unlike soil salt ions,soil nutrients and SMB were positively correlated with altitude,but negatively related to EC and SWC.Moreover,soil nutrients and SMB were negatively correlated with soil salt ions.In conclusion,soil nutrients and SMB were mainly influenced by salinity,and were related to altitude,soil depth,and SWC in the areas from the Qarhan Salt Lake to the Xidatan segment.These results imply that the soil quality(mainly evaluated by soil physical-chemical characteristics)is mainly influenced by soil salt ions in the areas surrounding the Qarhan Salt Lake.Our results provide an accurate prediction of how the soil salt ions,soil nutrients,and SMB respond to the changes along a salt gradient.The underlying mechanisms controlling the soil salt ion distribution,soil nutrients,and SMB in an extremely arid desert climate playa should be studied in greater detail in the future.