基于MaxEnt模型的小麦印度腥黑穗病在中国的适生性分析

本文用MaxEnt软件对小麦印度腥黑穗病(Karnalbunt)在我国的潜在分布进行了预测。结果表明,小麦印度腥黑穗病在中国适生范围广。根据适生值的大小,中风险区和高风险区主要分布在我国华北、黄淮海、西南、西北、长江中下游和东北地区的小麦主产区,加强这些区域的调查监测和检疫对保护我国的小麦生产有重要意义。     

Reaction of selected winter wheat cultivars from Europe and United States to Karnal bunt

A study was conducted to determine the susceptibility of popular United States (U.S.) and European winter wheat cultivars to the fungal pathogen Tilletia indica. Historically, the disease has been limited to autumn-sown spring-habit wheat areas and not associated with winter wheat. In 1997, Karnal bunt was observed on winter wheat in limited regions of Texas. This region marks the southern end of the contiguous U.S. central winter wheat belt, which extends north into Canada. The aim of this study was to assess the levels of disease resistance in winter wheat. Fifty U.S. and European winter wheat cultivars were tested using two different greenhouse inoculation procedures. For each cultivar, 12 spikes in boot were inoculated by boot-injection with a sporidial suspension (1.0 ml/boot, 10,000 spores ml⁻¹), and 12 other emerged spikes were spray-inoculated with the same concentration. The experiment was repeated for three seasons. Among cultivars, mean seed infection ranged from 2.1 to 87.2% and 0 to 15.6% for boot-injected and spray-inoculated treatments, respectively. Results showed that the majority of winter wheat cultivars tested were susceptible to Karnal bunt.     

DArTseq physical mapping of QTLs linked to Karnal bunt (Tilletia indica) resistance in two historical wheat populations

Karnal bunt, a disease of wheat, durum, rye, and triticale, is subject to strict quarantine restrictions worldwide. The disease is considered a major threat to food security, due to its use as a non-tariff trade barrier by several wheat-importing countries. In this paper, we analysed seven years of phenotypic data to search for quantitative trait loci (QTLs) associated with resistance in common wheat, validated the QTLs using an independent population, and assessed the potential of genomic selection as a tool for pre-emptive breeding. The QTL study used phenotypic data collected from artificially inoculated field experiments involving two historical Karnal bunt resistance populations: WH542 × HD29 and WH542 × W485. QTL analyses detected four significant (p < 0.001) QTLs on chromosomes 1A, 3A, 4B, and 6B, which explained between 13.7% and 15.7% of the phenotypic variation. A panel of 130 cultivars was used to validate QTL effects. These were genotyped with the same DArTseq protocol, and two of the four QTLs were significantly (p < 0.001) associated with Karnal bunt resistance in the validation panel. The potential of genomic selection was investigated by comparing accuracies of a model trained with all available markers and a model based solely on validated QTL information from the biparental populations. Genomic prediction accuracy, based on the two scenarios, averaged 0.43 and 0.33, respectively, suggesting that even in situations where phenotyping is difficult due to quarantine restrictions, the prospects for pre-emptive breeding against Karnal bunt are encouraging, and resources are now available that will reduce the cost burden.     

Electron Microscopy in Biology

Abstract

Farmer surveys were conducted in the Yaqui Valley, Sonora, Mexico during 1983 and 1985 to investigate the relationship between agronomic practices used by the farmers and the incidence of Karnal bunt (Tilletia indica) disease of wheat. The variables investigated included soil type, land preparation, origin of seed, irrigation, nitrogen fertilizer, weed control and crop rotations. None of these variables were found to have a significant influence on the disease. This indicates that although management practices may have some effect on the incidence of the disease they are not the primary factor. The coincidence of rainfall and/or high humidity at flowering time appears to be of more importance than agronomic practices.     

Identification and Differentiation of Tilletia indica and T. walkeri Using the Polymerase Chain Reaction

ABSTRACT Karnal bunt of wheat, caused by Tilletia indica, was found in regions of the southwestern United States in 1996. Yield losses due to Karnal bunt are slight, and the greatest threat of Karnal bunt to the U.S. wheat industry is the loss of its export market. Many countries either prohibit or restrict wheat imports from countries with Karnal bunt. In 1997, teliospores morphologically resembling T. indica were isolated from bunted ryegrass seeds and wheat seed washes. Previously developed PCR assays failed to differentiate T. indica from the recently discovered ryegrass pathogen, T. walkeri. The nucleotide sequence of a 2.3 kb region of mitochondrial DNA, previously amplified by PCR only from T. indica, was determined for three isolates of T. indica and three isolates of T. walkeri. There was greater than 99% identity within either the T. indica group or the T. walkeri group of isolates, whereas there was =3% divergence between isolates of these two Tilletia species. Five sets of PCR primers were made specific to T. indica, and three sets were designed specifically for T. walkeri based upon nucleotide differences within the mitochondrial DNA region. In addition, a 212 bp amplicon was developed as a target sequence in a fluorogenic 5' nuclease PCR assay using the TaqMan system for the detection and discrimination of T. indica and T. walkeri.     

Towards a more reasoned assessment of the threat to wheat crops from <Emphasis Type="Italic">Tilletia indica</Emphasis>, the cause of Karnal bunt disease

The interpretation of information used to defend an assessment that T. indica, the cause of Karnal bunt of wheat, has a high risk of establishing in Europe and of causing significant yield/quality losses is questioned. Karnal bunt has only established in locations that are arid or semi-arid with hot summers and cool/mild winters. There is very strong circumstantial evidence that substantial amounts of seed contaminated with teliospores of T. indica were sown in Europe in the past without the appearance of Karnal bunt. It is unlikely that sufficient numbers of teliospores would survive long enough on the soil surface under European conditions and then synchronise germination during the period at heading when wheat is vulnerable to infection to guarantee disease expression. Karnal bunt is regarded as a minor disease everywhere it occurs. Almost two thirds of European wheat cultivars inoculated by a severe boot injection method have been categorised as either resistant or highly resistant to T. indica. Yield/quality losses would be expected to be low even if the pathogen were capable of establishing in Europe. The status of T. indica as an important quarantine pest is based on the indirect economic consequences of the appearance of the pathogen and not on the direct damage it causes to wheat crops. Arguments in this and previous reviews advocating a more reasoned and comprehensive assessment of the threat to Europe, North America and other locations from T. indica need to be taken into consideration in any new pest risk analyses. David Jones is a retired employee of the Central Science Laboratory (CSL). Statements and opinions expressed in this paper are those of the author and are not the views of CSL.     

Susceptibility of European bread and durum wheat cultivars to Tilletia indica

Representative European wheat cultivars were tested under quarantine containment for their susceptibility to Tilletia indica, the cause of Karnal bunt of wheat. Fifteen winter and 15 spring wheat ( Triticum aestivum ) and 11 durum wheat ( Triticum durum ) cultivars were inoculated by boot injection just prior to ear emergence to test their physiological susceptibility. Selected cultivars were then re-tested by spray inoculation after ear emergence to determine their morphological susceptibility, which is a better predictor of field susceptibility. At maturity, the ears and seeds were assessed for incidence and severity of disease. For the physiological susceptibility tests, 13/15 winter wheat cultivars were infected and the percentage of infected seeds ranged from 1 to 32%. For spring cultivars, 13/15 cultivars were infected and the percentage of infected seeds ranged from 1 to 48%. For the durum cultivars, 9/11 were infected and the percentage of infected seeds ranged from 2 to 95%. Across all cultivars, 35/41 were infected. Based on historical Karnal bunt susceptibility categories using coefficients of infection, one cultivar was classed as highly susceptible, three as susceptible, 11 as moderately susceptible, 20 as resistant and only six as highly resistant. The spray-inoculation morphological susceptibility tests broadly confirmed the physiological susceptibility results, although lower levels of infection were observed. Overall, the range of susceptibility was similar to that found in cultivars grown in Karnal bunt affected countries. The results demonstrate that European wheat cultivars are susceptible to T. indica and thus could potentially support the establishment of T. indica if introduced into Europe.     

Seed-borne Pathogens on Wheat (Particularly Smuts) in Turkey1

The important seed-borne diseases of wheat in Turkey are common bunt ( Tilletia caries and T. foetida ), loose smut ( Ustilago nuda tritici ), dwarf bunt ( T. contraversa ) and flag smut ( Urocystis tritici ). Seed treatment against common bunt is widely used in Turkey. The damage is about 10–15 %, sometimes 90 % in some fields where seeds are sown without treatment. About 10 % of wheat fields were infected with bunt during 1972–1974. Seed treatment with carboxin (Vitavax) is recommended against loose smut of wheat in Turkey, but has not yet been used. Some wheat varieties, especially Siirak (1593/51) wheat, are highly susceptible to loose smut. The proportion of smut-infected heads reached 30–40 % in this variety and about 32 % of wheat fields were infected with loose smut during 1972–1974. The damage was about 6 % in infected fields. Yield losses were at least 35,000 tons. Dwarf bunt is distributed at high altitude (1300–2000 m) in eastern Turkey; 2500 ha of wheat fields are infected with dwarf bunt. The disease causes 1–80 % losses in some fields. The wheat variety Yayla 305 is recommended for infected areas. Flag smut is present in some areas of Turkey, but yield losses are not important. Seed treatment is effective against seed-borne spores.     

An Allee Effect Reduces the Invasive Potential of Tilletia indica

ABSTRACT The Karnal bunt pathogen, Tilletia indica, is heterothallic and depends on encounters on wheat spikes between airborne secondary sporidia of different mating types for successful infection and reproduction. This life history characteristic results in reduced reproductive success for lower population densities. Such destabilizing density dependence at low population levels has been described for a range of animals and plants and is often termed an Allee effect. Our objective was to characterize how the Allee effect might reduce the invasive potential of this economically important pathogen. We developed a simple population model of T. indica that incorporates an Allee effect by calculating the probability of infection for different numbers of secondary sporidia in the infection court. An Allee effect is predicted to be important at the frontier of an invasion, for establishment of new foci by a small population of teliospores, and when the environment is nonconducive for the production of secondary sporidia. Using estimated model parameter values, we demonstrated a theoretical threshold population size below which populations of T. indica were predicted to decline rather than increase. This threshold will vary from season to season as a function of weather variables and their effect on the reproductive potential of T. indica. Deployment of partial resistance or use of fungicides may be more useful if they push population levels below this threshold.     

Teliospore Survival and Plant Quarantine Significance of Tilletia Indies (causal agent of Karnal bunt) Particularly in Relation to China

The influence of temperature, light and soil conditions on teliospore germination of Tilletia (Neovossia) Indica was investigated. The teliospores were germinated by incubation in an aqueous suspension in a concavity on a water agar surface and the germination percentage was scored directly under low magnification of the compound microscope. The optimal temperature range for germination was found to be 15 to 22°C. Germination was extremely low at 2°C, but total inhibition was only observed after prolonged exposure to 35®C (in darkness) or to - 18°C under dry conditions. Light was shown to have a stimulating effect on germination (artificial daylight was found to be better that near ultraviolet light). No stimulation was achieved by prolonging the illumination from 12 to 24 h. Teliospores from 5-year-old wheat samples were shown to be viable. The weather conditions of the various wheat- growing areas of China were compared with the results obtained for the survival of teliospores of T. indica. It is concluded that a considerable risk exists for establishment and spread of the Karnal bunt disease if first accidentally introduced into China. Strict quarantine precautions, and policies can minimize or even eliminate this risk.     

A predictive model for spotted wilt epidemics in peanut based on local weather conditions and the tomato spotted wilt virus risk index

Tomato spotted wilt virus (TSWV), a member of the genus Tospovirus (family Bunyaviridae), is an important plant virus that causes severe damage to peanut (Arachis hypogaea) in the southeastern United States. Disease severity has been extremely variable in individual fields in Georgia, due to several factors including variability in weather patterns. A TSWV risk index has been developed by the University of Georgia to aid peanut growers with the assessment and avoidance of high risk situations. This study was conducted to examine the relationship between weather parameters and spotted wilt severity in peanut, and to develop a predictive model that integrates localized weather information into the risk index. On-farm survey data collected during 1999, 2002, 2004, and 2005 growing seasons, and derived weather variables during the same years were analyzed using nonlinear and multiple regression analyses. Meteorological data were obtained from the Georgia Automated Environmental Monitoring Network. The best model explained 61% of the variation in spotted wilt severity (square root transformed) as a function of the interactions between the TSWV risk index, the average daily temperature in April (TavA), the average daily minimum temperature between March and April (TminMA), the accumulated rainfall in March (RainfallM), the accumulated rainfall in April (RainfallA), the number of rain days in April (RainDayA), evapotranspiration in April (EVTA), and the number of days from 1 January to the planting date (JulianDay). Integrating this weather-based model with the TSWV risk index may help peanut growers more effectively manage tomato spotted wilt disease.     

Arguments for a low risk of establishment of Karnal bunt disease of wheat in Europe

Tilletia indica, which causes Karnal bunt of wheat, has been perceived as a pathogen that has a high risk of establishment in the UK and other countries in Europe. This viewpoint is challenged with arguments for the risk of establishment being much lower. The present distribution of the pathogen and its likely widespread dissemination with consignments of germplasm and wheat seed from Mexico over a 20 year period without establishment outside the hot arid and semi-arid zones strongly suggests that T. indica is unsuited to environments other than those similar to where it is now found. A critical density of teliospores needs to remain viable and ungerminated between periods of wheat anthesis and then germinate during a narrow window of opportunity to ensure infection and establishment. Despite the results of outdoor teliospore longevity experiments, it is by no means certain that this can occur under European conditions. Generally cooler conditions and more frequent periods of rain in Europe are likely to trigger teliospore germination at times unsuitable for infection making establishment much more unlikely. A model based on year-round soil conditions, especially moisture content, is seen as appropriate to predict teliospore survival and germination potential. It is only after areas where teliospores can survive and germinate in sufficient numbers to guarantee regular infection cycles have been defined can another model, based on temperature, rainfall and/or humidity prior to anthesis, be applied to determine if environmental conditions are suitable for infection. David Jones is a retired employee of the Central Science Laboratory (CSL). Statements and opinions expressed in this paper are those of the author and are not the views of the Central Science Laboratory.     

Abscisic acid is a potent inhibitor of growth and sporidial formation inneovossia indica cultures: Dual mode of actionvia loss of polyamines and cellular turgidity

The inhibition of polyamine biosynthesis inNeovossia indica (Mitra) Mundkur by D,L— α-difluoromethylornithine (DFMO) caused an effective reduction of mycelial growth and sporidial production underin vitro conditions, which was reversed by ornithine application. Abscisic acid proved to be similarly effective, not only in inhibiting mycelial growth and sporidial formation but also the germination of teliospores, which constitute the primary inoculum of the pathogen. ABA-mediated inhibition resulted in decreased polyamine levels and loss of cellular turgidity of mycelial cultures. Scanning electron microscopy of ABA-treated cultures revealed extremely shrunken hyphae, in marked contrast to the turgid controls. It is suggested that the manipulation of ABA levels and/or tissue sensitivity in wheat could be a strategy to combat ‘Karnal’ bunt, the disease caused byN. indica.     

Susceptibility of Wheat to Tilletia indica During Stages of Spike Development

ABSTRACT Karnal bunt of wheat is caused by the fungus Tilletia indica, which partially converts kernels into sori filled with teliospores. Despite minor overall yield and quality losses, the disease is of considerable international quarantine concern. Plant development stages reported susceptible to infection vary considerably. A study was designed to better define the susceptibility period by inoculating wheat spikes at different growth stages with naturally liberated secondary sporidia under optimal conditions for disease development. Spikes of a resistant and susceptible cultivar were inoculated at eight growth stages from awns emerging to soft dough. Spikes became susceptible only after emerging from the boot and continued to be susceptible up to soft dough stage at which low levels of disease occurred. Disease severity in both cultivars peaked when spikes were inoculated after complete emergence, but before the onset of anthesis. Disease levels tapered off gradually in spikes inoculated after anthesis. The results broaden the known susceptibility period of wheat to T. indica to include stages long after anthesis, and indicate that infection from airborne inoculum is not possible during boot or awns emerging stages, which are commonly referred to as the most susceptible stages.     

Emmer wheat, a potential new host of Tilletia indica

Two representative Italian emmer wheat (Triticum dicoccum) landraces, two selected lines and three improved emmer wheat cultivars, derived from crosses with durum wheat (Molisano landrace × ‘Simeto’), were tested for their susceptibility to Tilletia indica, the cause of Karnal bunt of wheat. Plants of emmer wheat were inoculated by injecting allantoid sporidial suspensions into the boot cavity of plants, just prior to ear emergence. A highly susceptible Indian spring wheat cultivar (Triticum aestivum) was used as a comparative control. At maturity of the plants, the seeds were harvested and assessed for incidence and severity of disease. All emmer wheat genotypes tested were infected but showed differing levels of susceptibility. The percentage of infected seeds for individual genotypes ranged from 5.4 to 75.0% compared with 99.1% for WL-711. The severity of infection was less in the old landraces, but it was higher in all the improved emmer wheat cultivars. In conclusion, Italian cultivars of emmer wheat were found to be highly susceptible to T. indica, and are potentially able to support the establishment of the pathogen.Authors L. Riccioni and M. Valvassori contributed equally to this work and should both be considered as first author.     

Internal Transcribed Spacer Sequence-Based Phylogeny and Polymerase Chain Reaction-Restriction Fragment Length Polymorphism Differentiation of Tilletia walkeri and T. indica

ABSTRACT A polymerase chain reaction-restriction fragment length polymorphism assay to distinguish Tilleita walkeri, a rye grass bunt fungus that occurs in the southeastern United States and Oregon, from T. indica, the Karnal bunt fungus, is described. The internal transcribed spacer (ITS) region of the ribosomal DNA repeat unit was amplified and sequenced for isolates of T. indica, T. walkeri, T. horrida, and a number of other taxa in the genus Tilletia. A unique restriction digest site in the ITS1 region of T. walkeri was identified that distinguishes it from the other taxa in the genus. Phylogenetic analysis of the taxa based on ITS sequence data revealed a close relationship between T. indica and T. walkeri, but more distant relationships between these two species and other morphologically similar taxa.     

Evaluation of relationships between weather patterns and prevalence of sorghum ergot in the Texas panhandle

ABSTRACT Sorghum ergot caused by Claviceps africana was observed for the first time in the United States in Southern Texas in 1997. That year there was a widespread ergot epidemic in hybrid seed production fields in the Texas Panhandle. However, occurrence of the disease has been sparse during the past 3 years, easing fears that the hybrid seed industry in the region might be endangered. To determine whether climatic factors were associated with observed variations in prevalence of ergot, weather data (temperature, precipitation, and relative humidity) were collected from seven weather stations in the Texas Panhandle. Sorghum ergot prevalence data for the period 1997 to 2000 were collected from records of seed companies in the Panhandle and related to weather variables. Results showed that, in the southern section of the Panhandle, maximum temperature and precipitation between 1 and 15 August were associated (r(2) = 0.98, P = 0.001 and r(2) = 0.81, P = 0.0193, respectively) with variations in the prevalence of ergot during the 4-year period. In the northern section, only maximum temperature during 16 to 31 July was significantly associated (r(2) = 0.91, P = 0.0111) with disease prevalence. Over all, 1997 was wetter and cooler, during the 1 to 15 August period, than each of the subsequent 3 years. In addition to creating humid conditions for ergot development, precipitation was associated with suppression of maximum temperature, enhancing ergot-favorable temperature conditions. Examination of historic weather data for the region showed that there were many instances in the past where temperature depression was associated with a rise in cumulative precipitation, creating ergot-favorable conditions similar to those in 1997. Cross-spectral analysis was used to determine whether such association is periodic. Weather data from five of the seven locations in the region showed peaks of significant coherency ( alpha< 0.05) at 2 to 4 years and 7 to 10 years or greater, indicating the existence of a periodic cycle in the temperature-precipitation association. The results of the investigation suggested that association of precipitation with temperature depression is a primary factor in development of ergot in the Texas Panhandle, and such association has a periodic cycle.     

陕西小麦条锈病发生面积预测模型

为提高陕西省小麦条锈病发生面积的预测准确度,以2010年-2018年陕西省小麦条锈菌冬繁区和越冬区的发生县区数、发生面积、温度和降雨量为数据集,通过Pearson相关性分析筛选病害流行的主要影响因子,利用全子集回归筛选病害流行的因子集。以筛选得到的影响病害流行的5个因子,即累计发生县区数、冬繁区条锈病发生面积、1月平均温度、1月平均降雨量和3月平均降雨量为自变量,采用全子集回归和BP神经网络算法开展小麦条锈病发生面积的预测研究。结果表明,全子集回归和BP神经网络算法对2019年-2020年的小麦条锈病发生面积预测准确度均达90%以上,预测2021年陕西省小麦条锈病发生面积分别为46.11万hm~2和52.85万hm~2。     

Models for predicting potential yield loss of wheat caused by stripe rust in the U.S. Pacific Northwest

Climatic variation in the U.S. Pacific Northwest (PNW) affects epidemics of wheat stripe rust caused by Puccinia striiformis f. sp. tritici. Previous models only estimated disease severity at the flowering stage, which may not predict the actual yield loss. To identify weather factors correlated to stripe rust epidemics and develop models for predicting potential yield loss, correlation and regression analyses were conducted using weather parameters and historical yield loss data from 1993 to 2007 for winter wheat and 1995 to 2007 for spring wheat. Among 1,376 weather variables, 54 were correlated to yield loss of winter wheat and 18 to yield loss of spring wheat. Among the seasons, winter temperature variables were more highly correlated to wheat yield loss than the other seasons. The sum of daily temperatures and accumulated negative degree days of February were more highly correlated to winter wheat yield loss than the other monthly winter variables. In addition, the number of winter rainfall days was found correlated with yield loss. Six yield loss models were selected for each of winter and spring wheats based on their better correlation coefficients, time of weather data availability during the crop season, and better performance in validation tests. Compared with previous models, the new system of using a series of the selected models has advantages that should make it more suitable for forecasting and managing stripe rust in the major wheat growing areas in the U.S. PNW, where the weather conditions have become more favorable to stripe rust.     

Image analysis for the identification of the quarantine pest Tilletia indica*

Diagnosis of the teliospores of Tilletia indica (Karnal bunt) detected in wash tests is complicated by the fact that wheat grain can be contaminated by ‘look‐alike’ species, namely Tilletia walkeri (ryegrass bunt) and Tilletia horrida (rice smut). Although morphological diagnosis is possible when there are relatively large numbers of teliospores present, it is difficult with only a few spores as there are significant overlaps in the characteristics of each species. Molecular methods can confirm presumptive identifications, but these take 2–3 weeks. Image analysis offers the potential for more rapid confirmation. An image analysis system was developed for use on bleached spores. Bleaching spores reveals additional morphological characters (spore profile and spore wall layers) that may be used in an image analysis system to discriminate species. The image‐processing software automatically locates spores on a given image and calculates perimeter, surface area, number of spines and spine size, maximum and minimum ray radius, aspect ratio and roundness. Principal components analysis (PCA) is performed on the parameters to obtain a linear separation of spore species. Accuracy of 97% in separating T. indica and T. walkeri has been achieved in preliminary tests using PCA, but further evaluation is required.