Role of stalk-anatomy and yield parameters in development of charcoal rot caused byMacrophomina phaseolina in winter sorghum

Charcoal rot caused byMacrophomina phaseolina (Tassi) Goid. damages stalk tissue and weakens stalk strength, leading to lodging of crop and loss in grain yield in sorghum. In an attempt to understand the pathogenicity byM. phaseolina in relation to stalk characters and plant outputs, the effects of morphological (stalk-thickness), anatomical (bundle-number, bundle-density, and vascular tissue) and physiological characters (water and soluble sugar content) of the stalks of winter sorghum genotypes on charcoal rot development were analyzed. Bundle-number and stalk-thickness had a significant influence on internal spread of charcoal rot. A thicker stalk facilitated the spread of lesions more than did a thinner one. A stalk with densely packed vascular bundles inhibited lesion advancement. Field studies with 24 winter sorghum genotypes demonstrated that most of the parameters that could improve grain and stover yield also increased the length of charcoal rot lesions. Lesion development in stalks showed a high degree of association with grain yield (R²=0.51) and 100-grain weight (R²=0.42). The rate of symptom development in stalks differed during dough and maturity stages. It was concluded that anatomical characters of sorghum stalk, especially bundle-number, along with yield parameters played an important role in determining the extent of stalk damage by charcoal rot in winter sorghum. http://www.phytoparasitica.org posting March 25, 2008.     

Macrophomina phaseolina–host interface: Insights into an emerging dry root rot pathogen of mungbean and urdbean,and its mitigation strategies

The necrotrophic fungus Macrophomina phaseolina is an important pathogen of many crops, such as strawberry, maize, sorghum, potato, soybean, chickpea, and pigeon pea, and causes multiple diseases throughout the world. The microsclerotia, which are the source of primary inoculum, play an important role in the survival and spread of M. phaseolina, as well as disease initiation and development. South Asia has unique characteristics relative to countries with temperate climates, that is, warm temperature, high humidity, and reduced rainfall that influence the interaction between M. phaseolina and its hosts. This review discusses the distribution pattern, pathogen background, pathogenic and genetic variability, and the mitigation strategies applied worldwide to reduce the impact of diseases caused by M. phaseolina with a focus on dry root rot of mungbean and urdbean in South Asia. Dry root rot, caused by M. phaseolina, is an emerging disease of mungbean and urdbean in South Asia. Dry root rot research in South Asia has focused mostly on adopting disease mitigation strategies evolved in tropical to temperate climates such as cultural practices, chemical control, genetic resistance, and biological control. Although the disease is prevalent in most of South Asia, there have been very few studies on M. phaseolina and its host–parasite interaction. Therefore, additional research is required in this domain, which could result in improved understanding and management of M. phaseolina in the face of present and future climate extremes.     

Root rot pathogens in field soil,roots and seeds in relation to common bean (Phaseolus vulgaris), disease and seed production

The interrelationships among bean productivity, prevalence of pathogens in roots, seeds and soil, and root rot disease were described at the pod maturity stage in 13 commercial fields. The soil population and frequency of pathogens isolated from seeds varied by pathogen species and field location. Fusarium solani was the most prevalent fungus isolated from bean seeds and field soil compared to Rhizoctonia solani, Macrophomina phaseolina and F. oxysporum. Principal component analysis revealed that the first component explaining 32% of the total variance was correlated with the root rot index. PC1 was more strongly linked to root and seed infections in comparison with soil populations of pathogens. Based on a correlation between PC2 (accounting for 23% of the total variance) and the number of seeds per bean plant, charcoal, Fusarium and Rhizoctonia root rots were recognized as more important determinants of seed losses to root rot disease. There were correlations among the major pathogens infecting either roots or seeds of beans. These findings provide useful information for future experimental plans to optimize management strategies for bean root rots.     

Evaluation of Bacillus spp. isolates as potential biocontrol agents against charcoal rot caused by Macrophomina phaseolina on common bean

The fungus Macrophomina phaseolina, the causal agent of charcoal rot of common beans, damages the roots, stems, and leaves of seedlings and plants and forms resistant structures, so that chemicals are not sufficient for disease control. Integrated management systems associated with the use of biological control techniques are a sustainable alternative. Here we collected 37 native bacterial isolates from the common bean rhizosphere and screened them for antagonistic activity against M. phaseolina. Four isolates (BA97, BN17, BN20, and BR20) identified as Bacillus spp. showed antagonism in vitro against M. phaseolina, inhibiting its growth by 62.5–85%. In an in planta antagonistic assay, isolate BN20 reduced disease severity the most. Isolates BA97, BN17, BN20, and BR20 produced volatile compounds as a mechanism of antagonism. They also produced indole acetic acid in vitro (1.98–3.87 μg/ml). These results suggest that seed bacterization with the rhizobacterial isolates for field planting may be an effective means to reduce crop damage by M. phaseolina.

     

Infection of mungbean seed by Macrophomina phaseolina is more likely to result from localized pod infection than from systemic plant infection

The ubiquitous fungal pathogen Macrophomina phaseolina is best known as causing charcoal rot and premature death when host plants are subject to post‐flowering stress. Overseas reports of M. phaseolina causing a rapid rot during the sprouting of Australian mungbean seed resulted in an investigation of the possible modes of infection of seed. Isolations from serial portions of 10 mungbean plants naturally infected with the pathogen revealed that on most plants there were discrete portions of infected tissue separated by apparently healthy tissue. The results from these studies, together with molecular analysis of isolates collected from infected tissue on two of the plants, suggested that aerial infection of aboveground parts by different isolates is common. Inoculations of roots and aboveground parts of mungbean plants at nine temperature × soil moisture incubation combinations and of detached green pods strongly supported the concept that seed infection results from infection of pods by microsclerotia, rather than from hyphae growing systemically through the plant after root or stem infection. This proposal is reinforced by anecdotal evidence that high levels of seed infection are common when rainfall occurs during pod fill, and by the isolation of M. phaseolina from soil peds collected on pods of mungbean plants in the field. However, other experiments showed that when inoculum was placed within 130 mm of a green developing pod and a herbicide containing paraquat and diquat was sprayed on the inoculated plants, M. phaseolina was capable of some systemic growth from vegetative tissue into the pods and seeds.     

Water relations,histopathology and growth of common bean (Phaseolus vulgaris L.) during pathogenesis of Macrophomina phaseolina under drought stress

Alterations in water relations, growth and histopathology caused by Macrophomina phaseolina, causal agent of charcoal rot, and drought stress were characterized in Phaseolus vulgaris L. under controlled conditions.P. vulgaris cultivars BAT 477 and TLP 19 (resistant) and Pinto UI-114 and Rio Tibagi (susceptible) were cultivated under irrigation and drought stress conditions in infested or uninfested pots with a highly virulent isolate ofM. phaseolina . Drought stress showed higher negative effects than M. phaseolina on water relations, vegetative growth and histopathology in P. vulgaris. Drought stress decreased transpiration rate, water potential, osmotic potential, turgor potential, relative water content, leaf area and dry weight of all vegetative structures of P. vulgaris. Drought stress increased charcoal rot development and stomatal resistance, and increased the association among physiological and growth characteristics and charcoal rot development. M. phaseolina invaded between epidermal cells of BAT 477 and Pinto UI-114 hypocotyls. The fungus infected cortex tissues, vascular cylinder, and pith cells of Pinto UI-114, but only epidermal and parenchyma cells of BAT 477. Typical symptoms caused by M. phaseolina were found to be associated with damage caused by the fungus on host tissues, and they were related to drought stress.     

Chemical Weed Control in Tobacco in Trinidad

Abstract

Ramie, the vegetable fibre, is obtained from the stem of Boehmeria nivea (L.) Gaud, and is used in many textile products. It is grown in tropical, sub-tropical and temperate regions and the main countries where it is grown are China, Brazil and the Philippines. However, it is only a minor crop in terms of world trade. The diseases of ramie are discussed in relation to their occurrence, symptoms and control measures. The major and most widespread diseases are white fungus caused by Rosellinia necatrix, leaf spot caused by Cercosporo spp. and Phyllosticta spp., seedling rot caused by Rhizoctonia solani, cane rot caused by Macrophomina phaseolina and eye rot caused by Myrothecium roridum. A number of diseases of minor importance are also reviewed.     

Combined effects of solarization and organic amendment on charcoal rot caused by<Emphasis Type="Italic">Macrophomina phaseolina</Emphasis> in the sahel

The effects of soil solarization combined or not with millet residues or paunch contents amendments, on the survival ofMacrophomina phaseolina (Tassi) Goid. and development of charcoal rot of cowpea (Vigna unguiculata), were assessed in a naturally infested soil. Solarization increased the soil temperature to 50°C for at least 4 h per day during June, leading to a significant reduction (44%) in soil inoculum ofM. phaseolina. Paunch contents or millet residues amendment (3 t ha⁻¹) caused 16% or 35% reduction of initial inoculum density, respectively. The combination of paunch contents or millet residues amendments followed by solarization, resulted in the strongest effects on inoculum density, with reductions of 46% or 66%, respectively. The reduction in disease severity, as expressed by the area under the disease progress curve, was 78% or 96% for the combination of millet residues or paunch contents amendments and solarization, respectively. The stronger effect of the treatments on disease severity than on inoculum density may be explained by a weakening effect caused by the treatments on the remaining inoculum. Our results suggest that in the Sahelian zone the combination of solarization and organic amendment can be a credible alternative to pesticides for managing charcoal rot disease and improving cowpea yield in fields with heavy infestations withM. phaseolina.     

Incorporation of <Emphasis Type="Italic">Brassica seed meal</Emphasis> soil amendment and wheat cultivation for control of <Emphasis Type="Italic">Macrophomina phaseolina</Emphasis> in strawberry

Macrophomina. phaseolina is the cause of charcoal rot, a disease of emerging importance in strawberry production systems. Brassicaceae seed meals (SM) and prior cultivation of soils with wheat were evaluated for the capacity to suppress charcoal rot of strawberry and to determine the relative contribution of seed meal derived chemistry and soil biology in disease control. Brassicaceae seed meal amendments suppressed the abundance of M. phaseolina detected in soil systems, but optimal SM-induced pathogen suppression required a functional soil biology. Suppression of M. phaseolina was obtained with SM sourced from various Brassicaceae species and was not associated with a biologically active chemistry such as that generated by Brassica juncea SM amendment (e.g. allyl isothiocyanate). Disease control observed in natural soil was abolished when SM amended soils were pasteurized prior to infestation with M. phaseolina, suggesting a functional role of soil biology in disease suppression that was observed. Cultivation of soils with wheat prior to pathogen infestation resulted in a level of disease control superior to SM amendment, however no additive effect on disease suppression was observed with integration of the two treatments. In small scale field trials, SM amendment induced phytotoxicity was observed and may have contributed to a lack of apparent control of charcoal rot. In the same trials, significant weed control was achieved in response to SM amendment. Across trials conducted in controlled and field environments there has been a lack of consistent association between the effect of SM amendment or wheat cultivation on M. phaseolina soil density and resulting level of root infection. This suggests that the observed disease control may have a greater dependence upon microbial interactions that transpire in the rhizosphere than that which occurs in the bulk soil environment.     

Interaction ofPseudomonas fluorescens withRhizobium for their effect on the management of peanut root rot

A biocontrol agent (Pseudomonas fluorescens) and a phytostimulator (Rhizobium) have been shown to have beneficial effects on plant growth and health. The study of plants inoculated withPseudomonas andRhizobium requires special attention because of the possibility that these agents may influence each other. Our study was conducted to test the effect of these inoculants on co-inoculation in peanut to control root rot, a severe soilborne disease caused byMacrophomina phaseolina. One fluorescent pseudomonad strain, Pf 1, which effectively inhibited the mycelial growth ofM. phaseolina underin vitro conditions, was studied for its compatibility with the biofertilizer bacterial strainRhizobium TNAU 14. Dual culture and colorimetric studies indicated the existence of a positive interaction between the microbial inoculants. However, glasshouse and field studies showed seed treatment and soil application ofPseudomonas fluorescens Pf 1 to be the most effective treatment in reducing root rot incidence and improving the crop vigor index, in comparison with treatments in which both inoculants were applied. http://www.phytoparasitica.org posting Feb. 11, 2002.     

Inactivation of Macrophomina phaseolina Propagules during Composting and Effect of Composts on Dry Root Rot Severity and on Seed Yield of Clusterbean

Survival of a heat-tolerant pathogen Macrophomina phaseolina, causing dry root rot of clusterbean, was studied by incorporation and retrieval of infected residue samples at various stages of the composting process of pearl millet (Pennisetum glaucum) and clusterbean (Cyamopsis tetragonoloba) residues. During the heating phase, temperatures varied from 48–51°C at 30cm and 60–62°C at 60cm depth in compost pits. Reduction in survival of M. phaseolina propagules (13–23%) was significantly higher in the residues enriched with 4% urea-N and kept at 60cm compared to 2% urea-N and at 30cm. However, a heat phase (48–62°C) was not enough to completely eradicate M. phaseolina propagules from infected residues. Further reductions (54–61%) in survived propagules were achieved by sub-lethal temperatures (48–53°C) when moistened compost materials were exposed to heat during summer days. Beneficial effects of composts were ascertained on dry root rot intensity, seed yield of clusterbean and densities of M. phaseolina, Nitrosomonas and antagonists in soil. In a two-year field study, all the composts significantly reduced plant mortality due to dry root rot and increased the yield of clusterbean. The highest disease suppression and yield promotion were recorded in soil amended with pearl millet compost and cauliflower leaf residue compost, respectively. Soil amendment with compost also lead to a significant reduced density of M. phaseolina and an increased density of antagonistic actinomycetes, lytic bacteria and Nitrosomonas. Among composts, greater potential of cauliflower compost in enhancing population of antagonists in soil was discernible.     

Characterization of isolates that cause black rot of crucifers in East Africa

A study was conducted in the East African countries of Kenya, Tanzania and Uganda in the months of July and August 2009 with the objectives of assessing the status of black rot and race structure of Xanthomonas campestris pv. campestris in the three countries. Samples infected with black rot were collected from farmers’ fields mainly from Brassica oleracea crops (broccoli, cabbage, cauliflower and kales). A total of 399 farms were surveyed of which 260 were from Kenya, 91 from Tanzania and 48 from Uganda. Following successful isolations, a total of 249 isolates of the causal agent, Xanthomonas campestris pv. campestris were recovered. Pathogenicity of all isolates was confirmed on B. oleracea susceptible cultivars Copenhagen Market F1 and Wirosa F1. Sixty of the 250 isolates were race-typed using a differential set Brassica spp. Only two races, 1 (Kenya and Tanzania) and 4 (Kenya, Tanzania and Uganda) were observed however, another race (5) was observed from one isolate recovered from a B. rapa sample obtained from Tanzania in 2003. Genomic fingerprinting with repetitive-PCR revealed clusters that did not depict significant correlations between isolates and geographical location, isolates and host adaptation or isolates and race. However, it did demonstrate existence of genetic differences within the East African X. campestris pv. campestris population indicating that it is not a similar clonal population of the same genetic background.     

Biological Control of Black Rot (Xanthomonas Campestris Pv. campestris) of Brassicas with an Antagonistic Strain of Bacillus Subtilis in Zimbabwe

Biological control efficiency of an antagonistic, endophytic strain of Bacillus subtilis (strain BB) was evaluated against three strains of the black rot pathogen, Xanthomonas campestris pv. campestris (Xcc), in four Brassica crops (cabbage, cauliflower, rape and broccoli) grown during three consecutive growing seasons and on two soil types, in two different areas in Zimbabwe. Strain BB controlled the disease caused by strain Xcc B-147 in all Brassica crops during the dry and short rainy seasons. A similar effect was observed in cabbage using the strain Xcc 33908. Biological control was effective in broccoli, but not in cabbage and rape during the main rainy season in clay loam soil and limited biological control effect was still observed when these crops were grown in sandy loam soil. The endophytic colonisation of cabbage roots by strain BB was confirmed by immuno-blotting during the whole growing season. Biological control of black rot with strain BB is discussed in relation to its effect on Xcc strains, Brassica crops and to the effect of weather and soil conditions.     

Opportunities for the microbial control of Allium white rot1

The microbial control of Allium white rot (Sclerotium cepivorum) has shown promise experimentally but has yet to be used in commerce. Allium crops are grown from dry or fluiddrilled seed at a range of seed rates, from bare root and module-grown transplants and from sets and cloves. The period of susceptibility to infection may be prolonged or short in cool and hot climates, respectively. Primary infection of the Allium host results from the growth of hyphae from germinating sclerotia to the roots; secondary infection results from hyphal growth between plants. Sclerotial populations in the soil are often low, hence sclerotia are widely dispersed and therefore inaccessible to microbial control. New sclerotia form on host stem tissue, rarely on roots, rendering them accessible to microbial control. Hyphal parasites may therefore be effective at reducing primary and secondary infection and the formation of new sclerotia. Parasites of sclerotia may restrict the survival of new sclerotia and hence reduce primary infection in future, but not the current season's crops. The opportunities and problems that the variety of growing techniques and conditions of Allium crops present for microbial control of white rot will be reviewed.     

Molecular characterization,comparison of screening methods,and evaluation of cross‐pathogenicity of black rot (Xanthomonas campestris pv. campestris) strains from cabbage,choy sum,leafy mustard and pak choi from Taiwan

Choy sum (Brassica rapa var. parachinensis), leafy mustard (Brassica juncea) and pak choi (B. rapa var. chinensis) are highly nutritious components of diets in Taiwan and other Asian countries, and bacterial black rot caused by Xanthomonas campestris pv. campestris (Xcc) is a major biotic constraint in these crops. As very little was known about the Xcc strains from these crops in these regions, including their cross‐pathogenicity and aggressiveness on different hosts, Xcc strains were obtained from cabbage (Brassica oleracea var. capitata), choy sum, leafy mustard and pak choi crops in Taiwan. Two previously published PCR‐based assays reliably distinguished the Xcc strains from other Xanthomonas species and subspecies. Phylogenetic analysis based on repetitive sequence‐based PCR assays placed the Xcc strains in a clade distinct from other Xanthomonas species, and also showed host specificity. Although all of the Xcc strains from the different host species were pathogenic on all five Brassica test species in both a detached leaf assay and an intact plant assay, in the intact plant assay they showed differences in virulence or aggression on the different test hosts. The Xcc strains from leafy mustard and pak choi were consistently highly aggressive on all the test host genotypes, but the strains from choy sum and cabbage were less aggressive on leafy mustard and choy sum. The intact plant assay proved more discriminating and reliable than the detached leaf assay for comparing the aggressiveness of Xcc strains on different host genotypes, and so, with the new Xcc strains isolated in this study, will be useful for screening leafy brassica germplasm accessions for resistance to black rot.     

Evidence that nematodes may vector the soft rot‐causing enterobacterial phytopathogens

Bacterial soft rot is a globally significant plant disease that causes major losses in the production of many popular crops, such as potato. Little is known about the dispersal and ecology of soft‐rot enterobacteria, and few animals have been identified as vectors for these pathogens. This study investigates whether soil‐living and bacterial‐feeding nematodes could act as vectors for the dispersal of soft‐rot enterobacteria to plants. Soft‐rot enterobacteria associated with nematodes were quantified and visualized through bacterial enumeration, GFP‐tagging, and confocal and electron scanning microscopy. Soft‐rot enterobacteria were able to withstand nematode grazing, colonize the gut of Caenorhabditis elegans and subsequently disperse to plant material while remaining virulent. Two nematode species were also isolated from a rotten potato sample obtained from a potato storage facility in Finland. Furthermore, one of these isolates (Pristionchus sp. FIN‐1) was shown to be able to disperse soft‐rot enterobacteria to plant material. The interaction of nematodes and soft‐rot enterobacteria seems to be more mutualistic rather than pathogenic, but more research is needed to explain how soft‐rot enterobacteria remain viable inside nematodes.     

Epidemiology of root rot caused by <Emphasis Type="Italic">Leptosphaeria maculans</Emphasis> in <Emphasis Type="Italic">Brassica napus</Emphasis> crops

The infection of above-ground tissues of Brassica napus by Leptosphaeria maculans is well understood. However, root infection (root rot) under field conditions, the development of root rot over time and its relationship to other disease symptoms caused by L. maculans has not been described. A survey of B. napus crops was conducted in Australia to investigate the incidence and severity of root rot. Additionally, the pathway of root infection was examined in field experiments. Root rot was present in 95% of the 127 crops surveyed. The severity and incidence of root rot was significantly correlated with that of crown canker; however, the strength of this relationship was dependent on the season. Root rot symptoms appeared before flowering and increased in severity during flowering and at maturity, a pattern similar to crown canker suggesting that the infection of the root is an extension of the crown canker phase of the L. maculans lifecycle. All isolates of L. maculans tested in glasshouse experiments caused root rot and crown canker in B. napus and Brassica juncea. In the field, the main pathway of root infection is via invasion of cotyledons or leaves by airborne ascospores, rather than from inoculum in the soil. Root rot was present in crops in fields that had never been sown to B. napus previously, in plants grown in fumigated fields, and in glasshouse-grown plants inoculated in the hypocotyl with L. maculans.     

In-vitro characterization of the behaviour of Macrophomina phaseolina (Tassi) Goid at the rhizosphere and during early infection of roots of resistant and susceptible varieties of sesame

There are major gaps in our knowledge of the stages of infection in soil borne pathogens. Soil borne diseases, such as charcoal root rot caused by Macrophomina phaseolina on sesame, have been studied, yet due to the difficulty in observing fungal behaviour in the soil, there has been no detailed study of the infection events. Moreover no study has attempted to compare the infection events in roots of resistant versus susceptible hosts. We present the first ultra-structural report to characterize the behaviour of the fungus in the proximity of the root, the appearance of fungal hyphae on the surface of roots, microsclerotia formation on hyphal strands, early penetration events and subsequent infection processes of M. phaseolina in sesame. We observed distinct differences in fungal behaviour in the rhizosphere and during infection of susceptible and resistant varieties. This study also describes a framework for comparative experiments. The possible reasons for the difference in behaviour of M. phaseolina in the vicinity of and during infection of roots of resistant vs. susceptible varieties of sesame and its implications for disease resistance are discussed.     

Discriminating microsatellites from Macrophomina phaseolina and their potential association to biological functions

One hundred and eighty‐two microsatellites or simple‐sequence‐repeat (SSR) markers for Macrophomina phaseolina were developed. These were tested on 24 isolates of M. phaseolina obtained from seven plant species, and the genetic variation of isolates was studied in relation to potential biological processes that could be affected in this fungus. A total of 120 SSR markers were polymorphic, amplifying >90% of the 24 isolates tested. Thirty percent of the markers showed multiple alleles on individual samples. A large number of markers showed unique alleles in isolates collected from pumpkin and snap bean. DNA sequences corresponding to 43 markers had significant hits on blast x and/or blast2go , and the polymorphism of 36 of those markers showed specific allele patterns for one or more plant host origin of the isolates. Additional tests on growth rate and copper resistance of the isolates identified markers that could be related to those traits. In addition, 27 markers were monomorphic and amplified all 24 isolates. Whereas polymorphic markers can be used for population genetics studies of M. phaseolina, the group of 27 monomorphic markers could help in the fast identification of this species in clinical specimens. The SSR markers developed here will enrich the limited molecular marker resource in M. phaseolina and could be used as the basis for more in‐depth studies of the host‐pathogen interactions of M. phaseolina.     

Rhizoctonia solani: taxonomy,population biology and management of rhizoctonia seedling disease of soybean

Rhizoctonia solani, the most important species within the genus Rhizoctonia, is a soilborne plant pathogen with considerable diversity in cultural morphology, host range and aggressiveness. Despite its history as a destructive pathogen of economically important crops worldwide, our understanding of its taxonomic relationship with other Rhizoctonia‐like fungi, incompatibility systems, and population biology is rather limited. Among the host of diseases it has been associated with, seedling diseases inflicted on soybean are of significant importance, especially in the soybean growing regions of North America. Due to the dearth of resistant soybean genotypes, as well as the paucity of information on the mechanisms of host–pathogen interactions and other molecular aspects of pathogenicity, effective management options have mostly relied upon a combination of cultural and chemical control options. The first section of this review summarizes what is currently known about the taxonomy and systematics, population biology and molecular genetics of R. solani. The second section provides an overview of the pathology and management of rhizoctonia root and hypocotyl rot of soybean, a seedling disease of importance in North America.