Forecasting the Genetic Impacts of Net Pen Failures on Gulf of Mexico Cobia Populations Using Individual‐based Model Simulations

Offshore net pen fish farming provides a cost‐efficient means for production of marine finfish, and there is great interest in development of net pen operations in domestic waters. However, there are concerns over the possible genetic and ecological impacts that escaped fish may have on wild populations. We used individual‐based simulations, with parameter values informed by life history and genetic data, to investigate the short‐term (50 yr) impacts of net pen failures on the genetic composition of cobia, Rachycentron canadum, stocks in the Gulf of Mexico. Higher net pen failure rates resulted in greater genetic impacts on the wild population. Additionally, the use of more genetically differentiated source populations led to larger influxes of non‐native alleles and greater temporal genetic change in the population as a result of net pen failure. Our results highlight the importance of considering the appropriate source population for broodstock collection in net pen aquaculture systems and help to provide a general set of best management practices for broodstock selection and maintenance in net pen aquaculture operations. A thorough understanding of the genetic diversity, stock structure, and population demography of target species is important to determine the impact escapees can have on wild populations.     

Assessing the sublethal impacts of anthropogenic stressors on fish: An energy‐budget approach

Fish are increasingly exposed to anthropogenic stressors from human developments and activities such as agriculture, urbanization, pollution and fishing. Lethal impacts of these stressors have been studied but the potential sublethal impacts, such as behavioural changes or reduced growth and reproduction, have often been overlooked. Unlike mortality, sublethal impacts are broad and difficult to quantify experimentally. As a result, sublethal impacts are often ignored in regulatory frameworks and management decisions. Building on established fish bioenergetic models, we present a general method for using the population consequences of disturbance framework to investigate how stressors influence ecologically relevant life processes of fish. We partition impact into the initial energetic cost of attempts to escape from the stressor, followed by the energetic impacts of any injury or behavioural change, and their consequent effects on life processes. As a case study, we assess the sublethal effects of catch and release angling for the European sea bass (Dicentrachus labrax, Moronidae), a popular target species for recreational fishers. The energy budget model described is not intended to replace existing experimental approaches but does provide a simple way to account for sublethal impacts in assessment of the impact of recreational fisheries and aid development of robust management approaches. There is potential to apply our energy budget approach to investigate a broad range of stressors and cumulative impacts for many fish species while also using individual‐based models to estimate population‐level impacts.     

Should we allow human‐induced migration of the Indo–West Pacific fish,barramundi Lates calcarifer (Bloch) within Australia?

Some biologists have expressed concerns about the possible genetic impacts of translocation between stocks of barramundi Lates calcarifer (Bloch) in Australia. Recent genetic, biogeographical studies have provided an understanding of the evolution of the currently observed population structure in Australian barramundi by assessing the impacts of ice‐age, sea‐level changes on their distribution. These studies found that genetic differences between most barramundi populations are extremely small, have arisen in the past 17 000 years, and substantial migration and hybridization between eastern and western populations, isolated for at least 110 000 years, has occurred naturally. Some phenotypic support for these minor genetic differences can be inferred from the lack of adaptation to temperature in growth and survival responses of widely separated stocks (tropical and temperate). Based on a low level of genetic differentiation and high levels of gene flow between populations, with little evidence of local adaptation, translocation between populations should not pose a significant risk or problem.     

The Three‐spined Stickleback,Gasterosteus aculeatus Linnaeus 1758, plays a minor role as a host of Lepeophtheirus salmonis (Krøyer 1837) in the Gulf of Maine

The sea louse, Lepeophtheirus salmonis (Krøyer 1837), is a significant parasite of farmed salmon throughout the Northern Hemisphere. Management of on‐farm louse populations can be improved by understanding the role that wild fish play in sustaining and providing refuge for the local population of sea lice. In this study, 1,064 sticklebacks were captured. Of these animals, 176 individuals were carrying a total of 238 sea lice, yielding a prevalence and intensity of 16.5% and 1.4 lice per fish, respectively. Detailed examination of the sea lice on the three‐spined sticklebacks captured in Cobscook Bay found two L. salmonis individuals using three‐spined sticklebacks as hosts. A 2012 survey of wild fish in Cobscook Bay, Maine, found multiple wild hosts for Caligus elongatus (von Nordmann 1832), including three‐spined sticklebacks (Gasterosteus aculeatus L.), but no L. salmonis were found in this earlier study.     

The capacity of oysters to regulate energy metabolism‐related processes may be key to their resilience against ocean acidification

Bivalve molluscs, such as oysters, are threatened by shifts in seawater chemistry resulting from climate change. However, a few species and populations within a species stand out for their capacity to cope with the impacts of climate change‐associated stressors. Understanding the intracellular basis of such differential responses can contribute to the development of strategies to minimise the pervasive effects of a changing ocean on marine organisms. In this study, we explored the intracellular responses to ocean acidification in two genetically distinct populations of Sydney rock oysters (Saccostrea glomerata). Selectively bred and wild type oysters exhibited markedly different mitochondrial integrities (mitochondrial membrane potential) and levels of reactive oxygen species (ROS) in their hemocytes under CO₂ stress. Analysis of these cellular parameters after 4 and 15 days of exposure to elevated CO₂ indicated that the onset of intracellular responses occurred earlier in the selectively bred oysters when compared to the wild type population. This may be due to an inherent capacity for increased intracellular energy production or adaptive energy reallocation in the selectively bred population. The differences observed in mitochondrial integrity and in ROS formation between oyster breeding lines reveal candidate biological processes that may underlie resilience or susceptibility to ocean acidification. Such processes can be targeted in breeding programs aiming to mitigate the impacts of climate change on threatened species.     

Catch‐related fish injury and catch efficiency of stow‐net‐based fish recovery installations for fish‐monitoring at hydropower plants

Hydropower‐related damage to fish remains a great challenge, making objective monitoring of turbine‐related fish injury a necessity. The catch of fish at turbine outlets is currently realised by net fishing, but potential catch‐related injuries are largely unknown. Catch efficiency and fish‐friendliness in relation to fish handling, exposure time, floating debris and fish biomass of four fish recovery installations were assessed using seven species. Highly species‐specific lethal and sublethal effects were observed. Exposure time had the strongest effects on catch‐related damage, being up to 150‐fold increase after 12 hr compared to 1 hr. Up to 84% mortality occurred in the most sensitive species Thymallus thymallus L. Besides exposure time, higher current speed and biomass within the net resulted in greater fish damage. To minimise catch‐related effects, keeping emptying periods <1–2 hr and considering the effects of current speed, fish and debris biomass are crucial to increase data comparability among studies.     

Factors controlling the early stages of viral haemorrhagic septicaemia epizootics: low exposure levels, virus amplification and fish-to-fish transmission

Viral haemorrhagic septicaemia virus, Genogroup IVa (VHSV), was highly infectious to Pacific herring, Clupea pallasii (Valenciennes), even at exposure doses occurring below the threshold of sensitivity for a standard viral plaque assay; however, further progression of the disease to a population‐level epizootic required viral amplification and effective fish‐to‐fish transmission. Among groups of herring injected with VHSV, the prevalence of infection was dose‐dependent, ranging from 100%, 75% and 38% after exposure to 19, 0.7 and 0.07 plaque‐forming units (PFU)/fish, respectively. Among Pacific herring exposed to waterborne VHSV (140 PFU mL^?1), the prevalence of infection, geometric mean viral tissue titre and cumulative mortality were greater among cohabitated herring than among cohorts that were held in individual aquaria, where fish‐to‐fish transmission was prevented. Fish‐to‐fish transmission among cohabitated herring probably occurred via exposure to shed virus which peaked at 680 PFU mL^?1; shed virus was not detected in the tank water from any isolated individuals. The results provide insights into mechanisms that initiate epizootic cascades in populations of wild herring and have implications for the design of VHSV surveys in wild fish populations.     

A survey of microparasites present in adult migrating Chinook salmon (Oncorhynchus tshawytscha) in south‐western British Columbia determined by high‐throughput quantitative polymerase chain reaction

Microparasites play an important role in the demography, ecology and evolution of Pacific salmonids. As salmon stocks continue to decline and the impacts of global climate change on fish populations become apparent, a greater understanding of microparasites in wild salmon populations is warranted. We used high‐throughput, quantitative PCR (HT‐qRT‐PCR) to rapidly screen 82 adult Chinook salmon from five geographically or genetically distinct groups (mostly returning to tributaries of the Fraser River) for 45 microparasite taxa. We detected 20 microparasite species, four of which have not previously been documented in Chinook salmon, and four of which have not been previously detected in any salmonids in the Fraser River. Comparisons of microparasite load to blood plasma variables revealed some positive associations between Flavobacterium psychrophilum, Cryptobia salmositica and Ceratonova shasta and physiological indices suggestive of morbidity. We include a comparison of our findings for each microparasite taxa with previous knowledge of its distribution in British Columbia.     

Conservation of endemic landlocked salmonids in regulated rivers: a case‐study from Lake Vänern,Sweden

Conservation of migratory salmonids requires understanding their ecology at multiple scales, combined with assessing anthropogenic impacts. We present a case‐study from over 100 years of data for the endemic landlocked Atlantic salmon (Salmo salar, Salmonidae) and brown trout (Salmo trutta, Salmonidae) in Lake Vänern, Sweden. We use this case‐study to develop life history‐based research and monitoring priorities for migratory salmonids. In Vänern, small wild populations of salmon and trout remain only in the heavily regulated Rivers Klar (Klarälven) and Gullspång (Gullspångsälven), and commercial and sport fisheries are maintained by hatchery stocking. These populations represent some of the last remaining large‐bodied (up to 20 kg) landlocked salmon stocks worldwide. We found that one of four stocks of wild fish has increased since 1996; the other three remain critically low. Hatchery return rates for three of four stocks appear stable at roughly 1% and annual fisheries catch is roughly 75 metric tons, with an estimated 7.5% of hatchery smolts being recruited to the fishery; this also appears relatively stable since 1990. Our analysis reveals much uncertainty in key data requirements, including both river return and fisheries catch rates, estimates of wild smolt production and survival, and hatchery breeding and genetics protocols. These uncertainties, coupled with a lack of information on their riverine and lacustrine ecology, preclude effective management of these unique populations. We conclude with a framework for a life history‐based approach to research and monitoring for Vänern salmon and trout, which should be applicable for all endemic, migratory salmonid populations.     

A critical analysis of the direct effects of dredging on fish

Dredging can have significant impacts on aquatic environments, but the direct effects on fish have not been critically evaluated. Here, a meta‐analysis following a conservative approach is used to understand how dredging‐related stressors, including suspended sediment, contaminated sediment, hydraulic entrainment and underwater noise, directly influence the effect size and the response elicited in fish across all aquatic ecosystems and all life‐history stages. This is followed by an in‐depth review summarizing the effects of each dredging‐related stressor on fish. Across all dredging‐related stressors, studies that reported fish mortality had significantly higher effect sizes than those that describe physiological responses, although indicators of dredge impacts should endeavour to detect effects before excessive mortality occurs. Studies examining the effects of contaminated sediment also had significantly higher effect sizes than studies on clean sediment alone or noise, suggesting additive or synergistic impacts from dredging‐related stressors. The early life stages such as eggs and larvae were most likely to suffer lethal impacts, while behavioural effects were more likely to occur in adult catadromous fishes. Both suspended sediment concentration and duration of exposure greatly influenced the type of fish response observed, with both higher concentrations and longer exposure durations associated with fish mortality. The review highlights the need for in situ studies on the effects of dredging on fish which consider the interactive effects of multiple dredging‐related stressors and their impact on sensitive species of ecological and fisheries value. This information will improve the management of dredging projects and ultimately minimize their impacts on fish.     

Impacts of hatchery release on genetic structure of rock carp <Emphasis Type="Italic">Procypris rabaudi</Emphasis> in the upper Yangtze River,China

Rock carp Procypris rabaudi is a vulnerable endemic fish in the upper Yangtze River. Hatchery release has been carried out as a major stock enhancement strategy for this species. Ten microsatellite loci were chosen to compare genetic variation between one wild population and two hatchery groups to evaluate the potential impacts of hatchery release on the genetic structure of the wild population. Two different models indicated strong evidence of recent bottlenecks in all groups. The hatchery groups were lower in the mean number of alleles per locus, allelic richness, and allelic diversity compared with the wild population. The 80% membership coefficient indicated that 14% of the wild fish could be assigned as hybrids of wild and hatchery fish. Our results suggested that hatchery release will further reduce the natural genetic diversity in the wild population, change the genetic structure of the rock carp population, and may not benefit restoration of this vulnerable fish species.     

Acoustic effects of underwater drilling and piling noise on growth and physiological response of Nile tilapia (Oreochromis niloticus)

Human‐generated noises are considered as underwater sound pollution with potential short‐ or long‐term impacts on behavioural responses and physiological reaction of aquatic living organisms. Few investigations are available so far on long‐term influences of impulsive and continuous sound sources on physiological response of fish. In the present study, opercula beat rates and pectoral wing rates were monitored as a physiological stress response of ventilation in Nile tilapia (Oreochromis niloticus) exposed to long‐term repeated and continued sounds generated from underwater construction work. Fish responded to underwater sound treatment with significantly increased opercula beat—and pectoral wing movements. Maximum ventilation rate was observed as a startle response of fish at initial exposure to underwater sound. The ventilation rates remained at high levels over the first 4 weeks and showed a declining trend thereafter. Fish growth was almost stable for the first 4 weeks, but shifted forward from day 45 onwards. We found strong evidence that fish could attune to repeated playbacks of underwater noise exposures since we found higher specific growth rates for the sound exposed fish from day 45 onwards until day 120, a so‐called ‘catch‐up growth endeavour’.     

Biochemical and histological changes in the brain tissue of spotted murrel, <Emphasis Type="Italic">Channa punctatus</Emphasis> (Bloch), exposed to endosulfan

The present experiment was conducted to establish the relationship between selected physiological parameters and histological responses of Channa punctatus brain tissue to endosulfan exposure. The fish (35.6 ± 0.7 g) was exposed to sublethal endosulfan concentration (8.1 μg l⁻¹) for a period of 12, 24, 36, 48, 72, and 96 h. Results showed that brain glucose level increased significantly after exposure, indicating a hyperglycemic state of the fish. Brain vitamin C level decreased with an increase in the exposure time. Acetylcholine esterase and adenosine triphosphatase enzyme activities also showed a significant reduction upon endosulfan exposure. Brain histopathology after 96 h endosulfan exposure showed that the apical lobe of the cerebrum (the only portion examined) had mild necrosis. Focal area of gliosis could be seen in the cerebrum, which were absent in the control fish. The results indicate that exposure of sublethal concentration of endosulfan to C. punctatus may have a direct effect on the histology of the fish's brain tissue, thereby affecting its metabolism.     

Energy balance of juvenile <Emphasis Type="Italic">Cyprinus carpio</Emphasis> after a short-term exposure to sublethal water-borne cadmium

Stress in fish can be assessed by means of a bioenergetic approach, based on the evaluation of changes in their physiological parameters. The objective of this study was to determine the impact of sublethal water-borne cadmium (Cd) on the energetic balance of juvenile Cyprinus carpio under laboratory conditions after a short-term exposure. Fish were exposed to a concentration of Cd (0.15 mg Cd l⁻¹) for 2 weeks. This concentration is environmentally realistic since it is usually found, even at higher values, in heavily polluted periurban water bodies of Argentina. No mortality was recorded among the animals used in the experiments. Food intake, food assimilation and assimilation efficiency, fecal production, liver glycogen content, oxygen consumption, oxygen extraction efficiency, specific metabolic rate, ammonia excretion and ammonia quotient (AQ), condition factor, and liver somatic index were determined. The overall balance was expressed as the scope for growth (SFG). The morphological indices and the liver glycogen content of Cd-exposed fish showed no significant differences when compared to those of controls. There was a significant decrease in the food intake, fecal production, and food assimilation rates as well as in AQ; the SFG exhibited a highly significant decrease. The remaining parameters (assimilation efficiency, oxygen consumption, oxygen extraction efficiency, specific metabolic rate, and ammonia excretion) increased after the exposure to Cd. We concluded that the sub-chronic exposure of Cyprinus carpio to a sublethal concentration of Cd causes important alterations in the energy-related homeostasis of fish. Most of the responses are indicative of physiological adaptations to compensate an increased energy requirement due to the impairments caused by the metal.     

Size‐dependent stress response in juvenile Arctic charr (Salvelinus alpinus) under prolonged predator conditioning

Predator conditioning can be used to improve post‐release antipredator recognition of hatchery‐reared salmonids. However, possible negative stress‐related effects of prolonged predator conditioning on juvenile fish physiology are poorly understood. We studied the effects of prolonged (91 days) predator odour exposure on whole‐body cortisol level and spleen size in six full‐sib families of juvenile hatchery‐bred Arctic charr (Salvelinus alpinus). Chemical cues from water containing charr‐fed pikeperch (Sander lucioperca) were used as the predator exposure stimuli and lakewater was used as a chemical control. Our study revealed that juvenile body cortisol levels post‐predator conditioning were affected by treatment, fish size and their interaction. Importantly, among the smaller (i.e. slowest growing) charr, the predator‐exposed fish had higher cortisol levels than control fish, while the opposite pattern was true for the larger fish. These results suggest that chemical cues from charr‐fed predators induce a prolonged stress response in juvenile charr. As prolonged predation exposure seems to elevate stress levels in a size‐dependent manner, the larger, faster growing fish could possibly have intrinsically lower stress responses to predation threats than smaller, slower growing fish. Possible coupling between stress sensitivity and growth requires further attention due to the likely implications for the management of unintended domestication among captive‐reared salmonids.     

Impact of sublethal di‐n‐butyl phthalate on the aquaculture fish species Nile tilapia (Oreochromis niloticus): histopathology and oxidative stress assessment

Phthalates such as di‐n‐butyl phthalate (DBP) and their esters are widely used plasticizers, their ubiquitous presence in daily life, inevitably leads to their restricted use due to important environmental pollution and health impacts and endocrine disruption potential. The aim of this study was to examine the effects of a sublethal concentration of 10 mg L^?1 DBP on haematocrit (HCT) values, gills and liver histology, malondialdehyde (MDA, 2‐thiobarbituric acid‐TBA reactivity) and reduced glutathione (GSH) levels in gills and liver tissue as oxidative stress biomarkers in the aquaculture fish species Nile tilapia (Oreochromis niloticus) after 24 (DBP‐24) and 96 (DBP‐96) h exposure. No differences were found between per cent HCT values in the 24 h exposure groups (P > 0.05). Response of antioxidant defence systems in liver and gill tissues of the fish were dependent on exposure duration and changed to a higher extent during 96 h. MDA levels in liver tissue increased in DBP treated fish in comparison to the control fish. However, the differences between the exposure and control groups were not significant (P > 0.05). A statistically significant decrease (P > 0.05) was recorded in gill MDA levels in the DBP‐96 group when compared to the control and DBP‐24 groups. The liver GSH levels were unchanged in the DBP treated fish. However, GSH levels were significantly lower in the gill tissue of the DBP‐96 group. Exposure to DBP caused several degenerative changes in the histology of gill and liver tissue. Gills displayed hyperaemia, epithelial lifting, oedema, talengiectasia, epithelial hyperplasia and fusion of secondary lamellae, whereas in liver several circulatory anomalies (hyperaemia, blood congestion and sinosoid dilatation) and vacuolization of hepatocytes were observed. Histopathological results demonstrated that the gills were more affected than the liver perhaps due to their direct contact with DBP.     

Genetic dynamics of a small population system: a model applicable to interactions between hatchery and wild fish

Straying between wild anadromous salmon populations is a natural process, and it is likely that the amount of gene migration from straying fish results from and reflects coadaptation between local populations. In contrast, introgression from cultured or transplanted fish may be disruptive. Data used to describe the genetic structure of populations usually come from biochemical genetic traits which may not reflect the strong selection that affects life-history characteristics. Simulations of a simple model of populations which included selection, genetic exchange and gene sampling error were conducted to examine the influences of these processes on population structure within the system. Results of these simulations indicate that data from loci not influenced by natural selection may provide a very different picture of population structure than data from loci subject to dispersive selection. Even relatively small decreases in average population fitness (0.0075) that accompany relatively weak selection can produce divergence between populations in the presence of local immigration rates of between 1 and 10%. Because of natural or anthropogenic causes, many population systems may not be in genetic equilibrium. Estimates from these simulations of parameters such as N_e, G_ST, N_em, and the G-statistic for heterogeneity, which are used to describe population genetic structure, may differ substantially from equilibrium values and from expectations for neutral loci. Statistically significant divergence between populations can occur even in the presence of 10 immigrants per generation. Results of simulations provide a means to examine potential results of introgression of alien fish into natural populations; but without knowing the extent of gene migration which occurs among wild populations and the magnitude of loss in average fitness of populations which results from introgression, it is not possible to predict what the impact will be.     

Fish invasion in the river systems of Guangdong Province,South China: Possible indicators of their success

Although a large number of fish species have been introduced into Guangdong Province in Southern China, a few species, such as tilapia (Tilapia spp.), North African catfish Clarias gariepinus Burchell, mrigal carp, Cirrhinus mrigala (Bloch) and the sucker mouth catfish (Hypostomus sp.), have established natural populations and can be considered “successful invaders” in large rivers. The specific mechanisms underlying these contrasting results among different introduced fish species remain understudied. The relationship between multiple abiotic–biotic factors and the success of four invasive species was investigated using survey data for the Guangdong Province river ecosystem. In contrast to previous studies that have considered species‐specific traits, the focus was on economic, ecological and anthropogenic factors to predict invasion success. Four main predictive indicators were found: (1) successful invaders were of low or no commercial value; (2) successful invaders tolerated a wide range of environmental conditions, including poor water quality; (3) biodiversity loss accelerated the growth of non‐native populations; (4) human disturbance facilitated population growth and spread of invasive fish species. To lessen the impacts of invasive fish species, the selection of breeding species and breeding areas, maintenance of water quality and reduction in water pollution, protection of the diversity of fish species and reduction of human interference should be addressed.     

Efficacy of fluorescent calcein mark retention and identification in endangered Colorado pikeminnow Ptychocheilus lucius

Distinguishing hatchery‐reared fishes from wild conspecifics can be required to quantify the success of augmentation programmes. This study estimated the probability of identifying calcein‐marked, hatchery‐reared Colorado pikeminnow Ptychocheilus lucius Girard from external and internal structures. Both control and marked fish held in the laboratory were correctly identified 80% of the time after 300 days. A fluorometer was more accurate 180 days post‐marking, whereas visual observation was more discriminating at 300 days. There were no differences in detection rates among structures in laboratory fish, and for most structures of fish held outdoors, detection rates were <20%. Overall, a strong negative effect of light on mark persistence was observed. Also, an initial positive effect of fish size on mark fluorescence and a negative effect of fish growth were detected. These results suggest the potential use of calcein as a batch‐marking tool would be aided by future studies that better quantify light exposure and calcein mark persistence in both field and experimental settings.     

Alarm substances elicit limited population‐level responses in fathead minnow

Abstract – Alarm substances, chemical cues released by injured prey, are associated with increased predation risk. In the laboratory, fathead minnows limit conspicuous behaviours, such as foraging and nest guarding, when exposed to these cues. Although such responses could lead to reductions in growth and reproduction, with subsequent demographic consequences (e.g., recruitment), effects of alarm substances at the population level are largely unknown. In three field experiments, ponds and cattle troughs stocked with fathead minnow populations were treated with alarm substances or a water control over the summer breeding and growing season. Alarm substances had no effect on male parental behaviour. In one experiment, spawning occurred earlier with exposure to alarm substances; however, there was no subsequent effect on recruitment of young in this or in the other two experiments. Despite individual‐level effects in short‐term experiments, repeated exposure to alarm substances over a season had no measureable impact at the population scale.