Current status & prospects of farming the giant river prawn (Macrobrachium rosenbergii de Man 1879) in Thailand

Thailand was second only to P.R.China in annual production of giant river prawn. This article briefly describes the seed production of giant river prawn technology in Thailand and notes that broodstock management has paid scant attention to genetic issues. There are, however, ongoing selective breeding programmes on giant river prawn aimed to improve growth and disease resistance. In the conventional culture technology, postlarvae are stocked at a high density and prawns are harvested partially. The cropping period is long and the practice has led to disease outbreaks and deteriorated pond bottoms that result in frequent detection of antibiotic residue. The improved culture technology involves manual sexing of the prawns at 3 months and restocking only the male prawns into new ponds at low density. The technique gives higher yield and reduces incidence of disease and thus the need for prophylactics. The constraints to giant river prawn culture business in Thailand include low yield and a limited export market. The article describes three ways to expand and sustain the business of giant river prawn farming in the country: development of more genetically improved strains; culture of all‐male stock, and new culture techniques.     

Genetic diversity of cultured and wild populations of the giant freshwater prawn Macrobrachium rosenbergii (de Man, 1879) based on microsatellite analysis

Freshwater prawn (Macrobrachium rosenbergii) culture in the Western Hemisphere is primarily, if not entirely, derived from 36 individual prawns originally introduced to Hawaii from Malaysia in 1965 and 1966. Little information is available regarding genetic variation within and among cultured prawn stocks worldwide. The goal of the current study was to characterize genetic diversity in various prawn populations with emphasis on those cultured in North America. Five microsatellite loci were screened to estimate genetic diversity in two wild (Myanmar and India‐wild) and seven cultured (Hawaii‐1, Hawaii‐2, India‐cultured, Israel, Kentucky, Mississippi and Texas) populations. Average allelic richness ranged from 3.96 (Israel) to 20.45 (Myanmar). Average expected heterozygosity ranged from 0.580 (Israel) to 0.935 (Myanmar). Many of the cultured populations exhibited reduced genetic diversity when compared with the Myanmar and the India‐cultured populations. Significant deficiency in heterozygotes was detected in the India‐cultured, Mississippi and Kentucky populations (overall F_is estimated of 0.053, 0.067 and 0.108 respectively) reflecting moderate levels of inbreeding. Overall estimate of fixation index (F_st = 0.1569) revealed moderately high levels of differentiation among the populations. Outcome of this study provide a baseline assessment of genetic diversity in some available strains that will be useful for the development of breeding programmes.     

Additive genetic and heterotic effects in a 4 × 4 complete diallel cross‐population of Nile tilapia (Oreochromis niloticus,Linnaeus, 1758) reared in different water temperature environments in Northern Vietnam

This study aims to estimate the strain additive genetic and heterotic effects on growth and survival in a 4 × 4 complete diallel cross‐population of Nile tilapia. Mass spawning was practised in replicate hapas to simultaneously produce progeny of all crosses for performance testing in three environments (in ponds at 20–30°C, in tanks at 15–20°C and in tanks at 20–25°C). A total of 6735 individually tagged fish were tested over a grow‐out period of 278 days. Statistical analyses were carried out on 5097 body trait records available at harvest. Across the test environments, the NOVIT4 strain exhibited the highest additive genetic values for both growth and survival (19% and 33% above the pure strain mean respectively). The heterosis effect was low and not different from zero for both traits. The ranking of strains with respect to their additive genetic values generally did not change between tank environments (15–20 vs. 20–25°C). The correlations of the additive genetic performance between tank environments were also high (0.84), suggesting that strain by water temperature interaction was likely not biologically important. By contrast, the differences in both performance and survival between pond and tank environments were statistically significant, indicating that this effect should be accounted for in future breeding programmes. The large additive genetic effect among strains coupled with the non‐significant heterotic effects in our study suggest that future breeding programme in this population of Nile tilapia should be based on a wise choice of strain or by exploiting the additive genetic variation through selective breeding.     

Genetic improvement of cold-water fish species

Carnivorous fish are two to three times as efficient as pigs and broilers in converting energy and protein to edible food for humans. As the domestication of fish continues, they will become more and more efficient and competitive with these industries. In the future, this will be very important, as more efficient utilization of available food resources is required to supply the growing human population with enough food. Today, about 1% of aquaculture production is based on genetically improved fish and shellfish. For salmonid fishes, we have the necessary knowledge to establish efficient breeding programmes. Large genetic variation has been associated with important economic traits. For growth rate, heritability ranges from 0.2 to 0.3, with a coefficient of variation of 20–30%. This implies that it is possible to obtain large responses from selection for growth rate. In several large‐scale experiments and in breeding programmes, 10–15% genetic change has been obtained per generation, which is much higher than that reported for other farm animals. In Norway, extensive breeding experiments with Atlantic salmon and rainbow trout were started in 1971. For the first two generations of selection, the breeding goal was growth rate. Age at sexual maturation (measured as frequency of grilse) was then included. From the fifth generation, disease resistance (measured by challenge test for furunculosis and the virus ISA) and meat quality (measured as fat percentage, fat distribution and flesh colour) were included. Today, Norsk Lakseavl AS (Norwegian Salmon Breeding Company Ltd) or NLA runs the National Breeding Programme and has two breeding stations where 400 full‐sib and half‐sib families of Atlantic salmon are tested in each of four year classes. For rainbow trout, the number of families totals 120 in each of three year classes. In 1997, the Norwegian production was 310 000 tons of Atlantic salmon and 33 000 tons of rainbow trout. At present, about 65% of the salmon and trout produced in Norway use genetically improved fish from NLA and multipliers. The cost–benefit ratio for the National Breeding Programme in Norway is estimated to be 1:15.     

First evidence of spawning migration by goldfish (Carassius auratus); implications for control of a globally invasive species

Goldfish (Carassius auratus) was one of the first fishes to be domesticated and has been widely introduced across the globe, but is now considered one of the world's worst invasive aquatic species. Surprisingly, there is a dearth of information on its spatial and temporal movement patterns, which hampers the development of effective control programmes. We examined the movement patterns of an introduced population of C. auratus in a south‐western Australian river using passive acoustic telemetry. The study population had a high residency index within the array (i.e. proportion of all days at liberty that, on average, each fish was detected by a receiver) with fish being detected on 64% of days. The individuals were also reasonably mobile, travelling a mean of 0.30 km (linear river kilometres).day^‐1 within the array, and one fish moved 231.3 km over the 365‐day study period (including 5.4 km in a 24 hr period). Importantly, C. auratus displayed significant seasonal movement patterns including a clear shift in habitats during its breeding period with most mature individuals being detected in an off‐channel wetland during that time. The results of this study strongly suggest that C. auratus undertook a spawning migration into a lentic habitat. These results have important implications for developing control programmes for the species, such as targeting connections to off‐channel lentic systems during its breeding period.     

An Assessment of Hatchery Cohort Growth Rates of South African Abalone,Haliotis midae,Across Four Commercial Environments

The abalone, Haliotis midae (commonly referred to as “perlemoen”), is an important aquaculture species in South Africa, accounting for the highest percentage of total aquaculture production revenue. The industry largely makes use of wild, undomesticated broodstock and thus a consortium of top producers was formed to develop a genetic improvement program to increase efficiency and sustainability of the industry. As such, the current study aimed to evaluate growth trait performance (wet weight and shell length) of four hatchery‐derived cohorts of South African abalone, across four differing production environments. No significant cohort‐by‐location effects were found for weight and length traits; however, differences were detected between respective cohorts and locations. It is concluded that a single synthetic population comprised of all hatchery cohorts under a single breeding goal is suitable for production at all test locations. Furthermore, advances in artificial reproductive technologies, genetic markers, and individual identification hold promise for genetic improvement of the species.     

Characterization of single‐nucleotide polymorphism markers in the Mediterranean mussel,Mytilus galloprovincialis

The Mediterranean mussel, Mytilus galloprovincialis, is one of the most important aquaculture species in Europe. Appropriate molecular markers are required to evaluate genetic resources and to trace genealogies in breeding programmes for improving mussel culture. Microsatellites have been commonly applied to this purpose in other species. However, Mediterranean mussel microsatellites have demonstrated high frequencies of null alleles that hamper accurate estimates of population parameters and confident parentage inferences. As alternative markers, we have characterized in silico 25 potential single‐nucleotide polymorphism (SNP) markers in the Mediterranean mussel from expressed sequence tag (EST) public databases. The genotyping of SNPs was performed using a single‐base extension approach. Their polymorphism was evaluated in 47 individuals from an Atlantic population. Out of the 25 potential SNPs tested, 12 were technically feasible (producing a single amplicon) and polymorphic. All were biallelic and had an unbiased heterozygosity ranging from 0.160 to 0.504. One SNP was from a mitochondrial gene. The combined potential of nuclear SNPs for parentage assignment gave an exclusion probability of a false couple of parents of 0.9471. These markers will be useful for evaluating resources and tracing genealogies in genetic breeding programmes implemented to solve the main problems of mussel culture.     

A novel breeding design to produce genetically protected homogenous fish populations for on‐growing

We present a novel KING breeding design to produce genetically protected homogeneous fish material for commercial producers from a breeding nucleus. KING F2‐production population is established from the nucleus, first through full‐sib mating within two unrelated high‐quality families to produce inbred F1‐progeny and then resolving the inbreeding in F2 through mating of the unrelated F1‐individuals. Owing to a small number of founders and the inbred F1‐parents, the remaining additive genetic variance is 37.5% of the original. This restricts the use of F2‐progeny to establish new breeding programmes, thereby protecting the genetic material of the nucleus. The theoretical calculations show that a concomitant decrease of phenotypic variance is possible. However, the reduction is considerable only for traits with high heritability (h² > 0.50). The method was tested with rainbow trout. The results revealed that the mean body weight of the KING‐progeny was similar, but, surprisingly, phenotypic variation (especially due to residual variance) was higher compared with either their outbred control group or the nucleus breeding population. Although further evaluation of this breeding design is needed, the results suggest that while genetic protection is achieved, the efficiency of the method to reduce phenotypic variation is limited for economically important traits with low‐to‐moderate heritability.     

Single nucleotide polymorphisms in the growth hormone gene of Oreochromis niloticus and their association with growth performance

Polymorphisms in the growth hormone (GH) gene that is associated with the growth rate of farmed fish have been the target of many breeding programmes. The present study aimed to identify single nucleotide polymorphisms (SNPs) in GH gene regions to evaluate the association of SNP variations with the growth rate of two Nile tilapia: Oreochromis niloticus (Linnaeus, 1758) strains. The targeted regions were amplified, sequenced, aligned and screened for the presence of SNPs; thereafter, performance tests were used to check for the association between SNPs and weight. Allele and genotype frequencies were estimated for each SNP and genotype. Genotype blocks or sets of SNP genotypes and frequencies were also estimated. Association between SNPs and growth rate was statistically evaluated using a univariate linear mixed model that included both fixed and random effects. A total of 10 SNPs were identified, nine in the proximal promoter and one located in the 5′ UTR, forming 10 genotype blocks. In all weight recordings, five genotype blocks were significantly associated with the highest weights. Single nucleotide polymorphisms 6‐10 were also found to be significantly associated with growth (p‐value < .05). Genotypes with higher additive genetic values for weight were identified in the Chitralada strain, suggesting a possible impact of these additive effects of the GH SNP genotype on the growth rate of Nile tilapia. These findings may be used as part of marker‐assisted selection in tilapia breeding programmes.     

Optimising codend configuration in a multispecies demersal trawl fishery

Abstract The relative efficiencies and selectivities of conventional and modified codends were examined in a demersal trawl fishery targeting several species, including eastern king prawns, Penaeus plebejus (Hess), whiting, Sillago spp. and cephalopods. The modifications to codends included: (i) reducing the circumference; (ii) increasing the mesh size in conventional diamond‐mesh designs; and (iii) orientating meshes on the bar so that they were square shaped. The codends were tested against a fine‐meshed control in paired comparisons onboard three commercial trawlers. The conventional codend comprised 41‐mm diamond‐shaped mesh attached to an anterior extension section at a ratio of 150 to 100 meshes and was demonstrated to be non‐selective for the targeted species. Reducing codend circumference to 100 meshes and increasing the size of mesh to 45 mm both improved selection for eastern king prawns, but the lateral mesh openings were estimated to be insufficient to allow juveniles of the other key species to escape. By contrast, codends made from 35‐ and 41‐mm mesh hung on the bar improved the size selection for eastern king prawns and selected stout whiting, Sillago robusta (Stead) (the smallest commercial‐sized fish) across narrow selection ranges and at 50% sizes of retention (L₅₀s) that were closely correlated to the transverse morphology of fish and the maximum mesh opening. With the exception of a reduction in catches of octopus, Octopus spp., by the 41‐square codend, there were no other impacts on commercial catches by the square‐mesh designs. It was concluded that diamond‐mesh codends are inappropriate for use throughout this multispecies fishery and that a modified design comprising at least 35‐mm mesh hung on the bar is required to minimise the fishing mortality of unwanted sizes of the key target species. The results are discussed in terms of the utility of these types of modifications for closely regulating selection in penaeid‐shrimp trawls.     

Effects of all‐male,mixed‐sex and all‐female freshwater prawn in polyculture with major carps and molas in the fallow rice fields

This study was conducted to evaluate the effects of all‐male, mixed‐sex and all‐female freshwater prawn (Macrobrachium rosenbergii) in a polyculture with major carps (Catla catla and Labeo rohita) and self‐recruiting small fish molas (Amblypharyngodon mola) in the fallow rice fields of Bangladesh. There were three treatments with three replicates. All ponds were stocked with carps and molas plus either all‐male prawns (treatment MP), mixed‐sex prawns (MFP) or all‐female prawns (FP). Prawn, mola, catla and rohu were stocked 20 000, 20 000, 1750 and 750 ha^?1, respectively, in all treatments. The prawns were fed twice daily, starting at 8% body weight and gradually reduced to 3% body weight. The fish were fed in the morning with mustard oil cake and rice bran (1:2 ratios) at 3% body weight. Significantly higher production of prawns (697 kg ha^?1) was obtained in treatment MP, which yielded 34.7% and 56.2% more production than MFP and FP respectively. Significantly higher total production of 1620 kg ha^?1 and a higher benefit–cost ratio of 2.10:1 were also obtained in treatment MP. It can be concluded that an all‐male prawn culture is economically more viable than all‐female and mixed‐sex prawn cultures, along with other fish like major carps and the nutrient‐dense molas in the polyculture.     

High gene flow in two migratory Neotropical fish species,Salminus franciscanus and Brycon orthotaenia,and implications for conservation aquaculture

1. Two migratory and endangered freshwater fish species, Salminus franciscanus and Brycon orthotaenia, are endemic to one of the most important basins for hydropower capacity in South America. These two fish are target species of conservation aquaculture programmes along the São Francisco River system.
2. In order to implement effective strategies for the conservation of these species, microsatellite markers were developed and used to assess the genetic diversity and structure among wild groups. Fish were collected during the spawning season at four sampling sites, covering more than 1000 km.
3. Polymorphism loci were assessed, and a total of 133 and 107 alleles were found for S. franciscanus and B. orthotaenia, respectively. Despite the critical conservation status, B. orthotaenia showed high levels of genetic diversity, comparable with those of other closely related species.
4. Salminus franciscanus exhibited half of the genetic diversity of its sister species in terms of allelic diversity, indicating that this species will be more prone to genetic drift and inbreeding in conservation aquaculture programmes.
5. The results of an analysis of molecular variance for microsatellite markers in these species (F_ST = 0.007 for S. franciscanus and F_ST = 0.003 for B. orthotaenia) and the estimated recent migration rates (>40% among sampling sites) support panmixia in both species, despite the heterogeneities of the riverscape.
6. The results of this study and the microsatellites developed will play an important role in assisting agencies in making informed decisions on conservation aquaculture programmes.

     

Recent advances of genome mapping and marker‐assisted selection in aquaculture

Aquaculture is the fastest growing sector in agriculture. Substantial genetic gains have been achieved in a few cultured species using conventional selective breeding approaches. However, the majority of fish and shellfish species remain in their wild state. Due to the recognition of the enormous potential of marker‐assisted selection (MAS) to speed up genetic gain through early selection, aquaculture scientists have constructed linkage maps in over 40 species and mapped quantitative trait loci (QTL) for important traits in over 20 species since the 1990s. Although MAS and genomic selection (GS) have not been widely used in aquaculture, their application in breeding programmes is expected to be a fertile area of research. In this paper, I summarized the recent advances of linkage and QTL mapping, as well as MAS in aquaculture species. I also discussed the potentials of genome‐wide association studies (GWAS) and GS in aquaculture species.     

Constrained by aliens,shifting landscape,or poor water quality? Factors affecting the persistence of amphibians in an urban pond network

1. Freshwater communities and especially pond‐breeding amphibians are extremely vulnerable to land‐use change, alien species introductions and the use of pesticides or other toxic chemicals, as reflected in their worldwide decline. Effective conservation and management of ponds requires a better understanding of the biotic and abiotic factors that shape diversity patterns and species distribution, especially in cases of habitat loss
2. The present study aimed to reveal and classify which pond and landscape characteristics are the most important determinants for the occurrence patterns of amphibian species as well as for the overall amphibian species richness in an urban pond network. To achieve this aim, 17 biotic and abiotic variables were measured for 61 ponds and the dataset was analysed by means of a machine‐learning approach, suitability indices and co‐occurrence modelling
3. The highest probability of Triturus macedonicus occurrence was found at fishless artificial and semi‐natural ponds. The persistence of Lissotriton graecus in ponds was predicted by high pond connectivity and the absence of fish reflecting the species dispersive potential. Pelophylax kurtmuelleri showed a higher probability of occurrence with increased pond connectivity and macrophyte cover.
4. Amphibian species richness was higher in fishless ponds with well‐oxygenated waters located in sites with a low to intermediate road density network. Ponds categorized as ‘average’ in terms of newt suitability were more frequently inhabited by fish than Triturus macedonicus. Alien fish species showed negative associations with both newt species, while both newt species showed a positive association between them.
5. The results support the view that conserving a greater number of water bodies with increased landscape connectivity and without any fish presence could provide amphibian species with alternative habitat choices, especially in sites with human pressure where pond stability is at stake owing to continuous landscape changes.

     

Testing options for the commercialization of abalone selective breeding using bioeconomic simulation modelling

The genetic response and economic benefit from alternative breeding programme designs for blacklip and greenlip abalone (Haliotis rubra and Haliotis laevigata, respectively) were evaluated using a computer simulation model. Two selection criteria were investigated, one used family breeding values for liability to disease challenge test infection and the other used a direct selection of the best performing individuals across families for growth rate. Five scales of breeding programme were tested and the model predicted that if growth rate is the only selection criterion, breeding programmes of a scale using 150 families of each species each generation would result in 12–13% genetic improvement in initial generations and have the greatest beneficial economic impact on the Australian abalone industry of the options tested. The model predicts an average discounted benefit–cost ratio of 48:1, total added discounted benefit of AU$4.90 for each kilogram of abalone produced and nominal economic effect on operating income of over AU$16 million per year after 10 years. If disease resistance is the only selective breeding criterion, 100 families of each species would result in the highest benefit–cost ratio of the options tested, although some genetic gain would need to be sacrificed to reduce inbreeding to acceptable levels in this scenario. A strategy for a stand‐alone abalone selective breeding cooperative was also modelled. For a farm of current tank area yielding 100 t year^?1, participation is expected to yield over AUThe genetic response and economic benefit from alternative breeding programme designs for blacklip and greenlip abalone (Haliotis rubra and Haliotis laevigata, respectively) were evaluated using a computer simulation model. Two selection criteria were investigated, one used family breeding values for liability to disease challenge test infection and the other used a direct selection of the best performing individuals across families for growth rate. Five scales of breeding programme were tested and the model predicted that if growth rate is the only selection criterion, breeding programmes of a scale using 150 families of each species each generation would result in 12–13% genetic improvement in initial generations and have the greatest beneficial economic impact on the Australian abalone industry of the options tested. The model predicts an average discounted benefit–cost ratio of 48:1, total added discounted benefit of AU$4.90 for each kilogram of abalone produced and nominal economic effect on operating income of over AU$16 million per year after 10 years. If disease resistance is the only selective breeding criterion, 100 families of each species would result in the highest benefit–cost ratio of the options tested, although some genetic gain would need to be sacrificed to reduce inbreeding to acceptable levels in this scenario. A strategy for a stand‐alone abalone selective breeding cooperative was also modelled. For a farm of current tank area yielding 100 t year^?1, participation is expected to yield over AU$0.7 million in discounted total added production value and annual discounted returns of over AU$0.4 million per annum by year 10.     

Artificial breeding and embryonic development of Synodontis zambezensis (Peters, 1852)

Synodontis sp. are an important source of food in many African countries including, Nigeria, South Africa, Egypt and Ghana. This is likely due to the genus being an excellent source of fat in fish‐based diets. However, there is also increased accumulation of lipophilic pollutants which can be transferred to the human population. In South Africa, Synodontis zambezensis is an important food source in rural communities, particularly along the Phongolo River system. The aim of this study was to breed Synodontis zambezensis in captivity, adapting a variety of protocols previously used in artificial breeding of Clarias gariepinus, Synodontis petricola and Synodontis nigromaculatus. A synthetic gonadotropin‐releasing hormone compound (Aquaspawn®) was used to induce reproductive development followed by manual fertilization of stripped eggs using sperm from dissected testis of sacrificed males. The embryonic development was consistent with other fish species and followed the same embryonic developmental stages. Initial hatching occurred within 26 hrs after fertilization, and survival rates of fry and subsequent fingerlings were as high as 80%. S. zambezensis has previously been used as a bio‐indicator species in field studies. Successful artificial breeding and rearing of this species improves the ability to use this indigenous species as a test organism in laboratory‐based assessments of chemicals and bioaccumulation of harmful chemicals such as Dichlorodiphenyltrichloroethane (DDT).     

Genetic relationship between broodstocks of olive flounder, Paralichthys olivaceus (Temminck and Schlegel) using microsatellite markers

For the first generation of a selective breeding programme, it is important to minimize the possibility of inbreeding. This mostly occurs by mating between closely related individuals, while proper mating can provide an opportunity to establish the base families with wide genetic variation from which selection for subsequent generations can be more effective. Genotyping with microsatellite‐based DNA markers can help us determine the genetic distances between the base populations. The genetic markers further facilitate the identification of the correct parents of the offspring (parentage assignments) reared together with many other families after hatching. We established a genetic analysis system with microsatellite DNA markers and analysed the genetic distances of three farmed stocks and a group of fish collected from wild populations using eight microsatellite markers. The averaged heterozygosity of the farming stocks was 0.826 and that of the wild population was 0.868. The hatchery strains had an average of 8.6 alleles per marker, which was less than a wild population that carried an average of 14.3 alleles per marker. Significant Hardy–Weinberg disequilibrium (HWDE) was observed in two farming stocks (P<0.05). Despite relatively low inbreeding coefficiency of the hatchery populations, the frequency of a few alleles was highly represented over others. It suggests that the hatchery stocks to some extent have experienced inbreeding or they originated from closely related individuals. We will develop a selective program using the DNA markers and will widen the usage of the DNA‐based genetic analysis system to other fish species.     

Genetic diversity and structure of domesticated strains of red sea bream,Pagrus major,inferred from microsatellite DNA markers

The genetic diversity and structure of nine domesticated strains of red sea bream used in a private hatchery were studied and compared to a wild population. A total of 313 individuals were genotyped at eight microsatellite loci. Average number of alleles per locus ranged from 5.5 to 9.4 in domesticated strains, but that of the wild population was 28.4. Heterozygosity of domesticated strains (ranged 0.697–0.804) was also lower compared to the wild population (0.952). Estimated Ne also decreased in all domesticated strains (ranged 10.3–126.0) compared to the wild population (1422.5). The UPGMA tree and 3‐D FCA showed that there were two main clusters containing domesticated strains, and the wild population was at the middle of both of the domesticated clusters. The STRUCTURE analysis also supported the phylogenetic analysis, and revealed three sub‐clusters in the domesticated strains. Pairwise F_ST revealed that all domesticated strains were statistically different from the wild population, and also the differentiation between domesticated strains was all statistically significant. Information on genetic diversity and structure of domesticated strains of red sea bream obtained in this study will be useful for future broodstock management and selective breeding programmes.     

Genetic variation of Rutilus rutilus caspicus (Jakowlew 1870) populations in Iran based on random amplified polymorphic DNA markers: a preliminary study

Rutilus rutilus caspicus is regarded as a valuable fish species both for angling and commercial food in Iran. This fish is also considered as a significant food source for beluga sturgeon. The genetic diversity of this fish species collected from two geographical areas (Gorgan Bay and Anzali Wetland) along the Iranian coastline of the Caspian Sea was examined using the analysis of randomly amplified polymorphic DNA (RAPD). Using 10 decamer primers, the total number of RAPD bands produced in both Gorgan Bay and Anzali Wetland populations were 94 bands. The percentages of polymorphic bands were comparable in Anzali Wetland (41.48%) and Gorgan Bay (43.61%), suggesting similar levels of polymorphism of the two populations to be used for establishing selective breeding programmes. The value of Nei's genetic distance (d=0.04) among populations was small, despite the large geographic separation. The data serve as a baseline analysis of current genetic diversity found among R. rutilus caspicus populations in Iran.     

Importance of life‐history and landscape characteristics for genetic structure and genetic diversity of brown trout (Salmo trutta L.)

Abstract – Investigating the influence of evolutionary forces on the genetic structure and genetic diversity remains a major challenge. Yet, it is of considerable interest for conservation and management of a species. This study investigates the influence of life‐history and landscape features, such as altitude, connectivity and habitat size, on genetic diversity and genetic structure of brown trout (Salmo trutta L.) with stream‐resident, lake‐dwelling and sea‐migrating life‐history in two river systems in northern Sweden. Using regression tree analysis including ecological and landscape characteristics, we show that life history is the most important variable explaining genetic diversity and population differentiation. Sea‐migrating populations show high diversity and low differentiation, and lake‐ and stream‐resident populations show low diversity and high population differentiation, among all samples. No overall genetic correlation with geographical distance was noted; however, among sea‐migrating populations within the River Vindelälven drainage, this pattern was observed. This study illustrates that life‐history and landscape features help to explain genetic structure and genetic variation. The information is important for conservation and management actions, such as fisheries regulations, habitat restorations, stocking of hatchery fish, defining management units and introducing genetic monitoring programmes.