Use of Bayesian hierarchical models to estimate northern abalone,Haliotis kamtschatkana,growth parameters from tag-recapture data

Bayesian hierarchical models were developed to estimate the growth parameters of northern abalone, Haliotis kamtschatkana, using tag-recapture data with a mixture of single and multiple recaptures. Individual variability in the growth parameters L_∞ and k of the von Bertalanffy model was incorporated in the analyses. The models developed fit the data well based on the Bayesian p-values. Variability in L_∞ for individuals was high relative to the variability in L_∞ for the population, and variability in k for individuals was about the same as the variability in k for the population. Simulations showed that estimates of the growth parameters were accurate (relative biases <5%), when variability in both L_∞ and k or just in L_∞ was accounted for. The “true” values of the parameters, L_∞ and k, were contained in the estimated 95% credibility intervals in 90–94 out of 100 simulation runs on 100 simulated data sets. Overall, allowing for variability for both L_∞ and k resulted in moderately more accurate estimates than allowing for just L_∞. On the contrary, estimates were unreliable when variability in just k was considered. Using the WinBUGS software program, the calculation procedure was rather simple irrespective of which growth parameter was modeled with variability.     

Suppression of invasive lake trout in an isolated backcountry lake in Glacier National Park

Fisheries managers have implemented suppression programmes to control non‐native lake trout, Salvelinus namaycush (Walbaum), in several lakes throughout the western United States. This study determined the feasibility of experimentally suppressing lake trout using gillnets in an isolated backcountry lake in Glacier National Park, Montana, USA, for the conservation of threatened bull trout, Salvelinus confluentus (Suckley). The demographics of the lake trout population during suppression (2009–2013) were described, and those data were used to assess the effects of suppression scenarios on population growth rate (λ) using an age‐structured population model. Model simulations indicated that the population was growing exponentially (λ = 1.23, 95% CI: 1.16–1.28) prior to suppression. However, suppression resulted in declining λ (0.61–0.79) for lake trout, which was concomitant with stable bull trout adult abundances. Continued suppression at or above observed exploitation levels is needed to ensure continued population declines.     

Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies

Large and long‐lived piscivorous brown trout, Salmo trutta, colloquially known as ferox trout, have been described from a number of oligotrophic lakes in Britain and Ireland. The “ferox” life history strategy is associated with accelerated growth following an ontogenetic switch to piscivory and extended longevity (up to 23 years in the UK). Thus, ferox trout often reach much larger sizes and older ages than sympatric lacustrine invertebrate‐feeding trout. Conventional models suggest that S. trutta adopting this life history strategy grow slowly before a size threshold is reached, after which, this gape‐limited predator undergoes a diet switch to a highly nutritional prey source (fish) resulting in a measurable growth acceleration. This conventional model of ferox trout growth was tested by comparing growth trajectories and age structures of ferox trout and sympatric invertebrate‐feeding trout in multiple lake systems in Scotland. In two of the three lakes examined, fish displaying alternative life history strategies, but living in sympatry, exhibited distinctly different growth trajectories. In the third lake, a similar pattern of growth was observed between trophic groups. Piscivorous trout were significantly older than sympatric invertebrate‐feeding trout at all sites, but ultimate body size was greater in only two of three sites. This study demonstrates that there are multiple ontogenetic growth pathways to achieving piscivory in S. trutta and that the adoption of a piscivorous diet may be a factor contributing to the extension of lifespan.     

Feed intake as explanation for density related growth differences of common sole Solea solea

Growth of common sole Solea solea is negatively correlated to density, which affects productivity in culture and hence commercial success. Studies of individual feed intake were performed to examine growth and population dynamics at different densities. Three initial stocking densities: 1.0, 2.1 and 3.9 kg m^?2 of individually tagged sole, referred to as low density (LD), medium density and high density HD), were examined during 145 days. Despite that tank productivity (g m^?2 day^?1), was highest for the HD group, the specific growth rate (SGR) decreased significantly with increase in stocking density. Individual size variation was similar between densities, indicating that growth was not associated with hierarchy and dominant behaviour. Individual data indicated that increased density reduced the growth potential of all individuals in a population. Individual feed intake was positively correlated to both fish size and individual SGR. Feed conversion ratio was likewise positively correlated to feed intake. The relative feed intake (g feed g fish^?1) was not correlated to fish size at any density tested, but was significantly highest for the LD population. This explains a substantial part of the better growth in the LD group supported by indications of better utilization of the ingested feed.     

Evaluating genetic structure among resident and migratory forms of bull trout (Salvelinus confluentus) in Northeast Oregon

Abstract –  Many salmonids express multiple behavioural forms within the same population, representing an evolutionary adaptation to a heterogeneous environment. For bull trout, resident and migratory forms co-occur in streams, but it is unknown whether the two forms assortatively mate. We assessed genetic differentiation between resident and migratory bull trout (using eight microsatellite loci) in the South Fork Walla Walla River. We PIT-tagged and fin-clipped bull trout and assigned individuals to behavioural subpopulations based on movement patterns. The pair-wise F _ST value between resident and migratory subpopulations (0.0037) was statistically insignificant, and individual-based analyses of structure using both multivariate and Bayesian approaches showed a lack of genetic structure within the population. These results have important implications for assessing population status and management; while the population may be managed as a single reproductive unit, the phenotypic variation within this population may have fitness consequences and thus merits conservation.     

Gills,growth and activity across fishes

Life history theory suggests that maximum size and growth evolve to maximize fitness. In contrast, the Gill Oxygen Limitation Theory (GOLT) suggests that growth and maximum size in fishes and other aquatic, water-breathing organisms is constrained by the body mass-scaling of gill surface area. Here, we use new data and a novel phylogenetic Bayesian multilevel modelling framework to test this idea by asking the three questions posed by the GOLT regarding maximum size, growth and gills. Across fishes, we ask whether the body mass-scaling of gill surface area explains (1) variation in the von Bertalanffy growth coefficient (k) above and beyond that explained by asymptomatic size (W_∞), (2) variation in growth performance (a trait that integrates the tradeoff between k and W_∞) and (3) more variation in growth performance compared to activity (as approximated by caudal fin aspect ratio). Overall, we find that there is only a weak relationship among maximum size, growth and gill surface area across species. Indeed, the body mass-scaling of gill surface area does not explain much variation in k (especially for those species that reach the same W_∞) or growth performance. Activity explained three to five times more variation in growth performance compared to gill surface area. Our results suggest that in fishes, gill surface area is not the only factor that explains variation in maximum size and growth, and that other covariates (e.g. activity) are likely important in understanding how growth, maximum size and other life history traits vary across species.     

Fitting growth with the von Bertalanffy growth function: a comparison of three approaches of multivariate analysis of fish growth in aquaculture experiments

Three approaches for multivariate analysis of fish growth in aquaculture experiments with Nile tilapia (Oreochromis niloticus niloticus L.) based on the von Bertalanffy growth curve are presented and compared. The approaches are: an extended Gulland‐and‐Holt (GH) plot, a forced extended GH plot and a multilinear regression analysis for the growth parameter K. All three models provide valuable insight into the major environmental factors influencing the daily growth rate and explain 28–46% of the variance of the observed daily growth rate of the used data set. For all three methods, the modelled parameter is significantly related to the net yield of Nile tilapia and can, therefore, be used for the predictive modelling of management scenarios. The extended GH plot loads the influence of environmental parameters upon L_∞, while the forced extended GH plot and Direct fitting of K load the influence on the growth parameter K. The latter is more in the tradition of aquaculture research. But the forced extended GH plot and Direct fitting of K can only be applied if L_∞ of the cultured species is known, as the selected L_∞ influences the variance in the regression variables.     

Is the fast growth of an equatorial Micropterus salmoides population explained by high water temperature?

Britton JR, Harper DM, Oyugi DO. Is the fast growth of an equatorial Micropterus salmoides population explained by high water temperature? Ecology of Freshwater Fish 2010: 19: 228–238. © 2010 John Wiley & Sons A/S Abstract – Marginal increment analysis of scales collected from the introduced Micropterus salmoides population of Lake Naivasha, Kenya revealed the formation of an annual growth check, validating their use to age individual fish. Subsequent analysis of scales from 372 fish collected between 2002 and 2009 revealed individuals were very fast growing compared with native populations in North America and other introduced populations in Europe, South America, Africa and Asia. This was likely to be as a result of the water temperatures in Lake Naivasha exceeding 20 °C throughout the year. This was corroborated by a meta‐analysis of the growth parameters asymptotic length L_∞ and growth coefficient K from across their geographical range that revealed variance was explained by differences in mean annual air temperatures. At a break point of approximately 10 °C, there was a shift to reduced L_∞ and increased K, suggesting a temperature driven trade‐off between growth rate and ultimate length. When adjusted for temperature and weighted for sample size, there were significant differences between the growth parameters of the North American and introduced populations, suggesting that other abiotic and biotic variables were also important determinants of the growth of individuals between the two ranges.     

Total population density during the first year of life as a major determinant of lifetime body‐length trajectory in marble trout

Abstract – The conditions experienced early in life can strongly influence life‐history trajectories in a variety of animal species. Here, we use data from four isolated populations of the endangered stream‐dwelling salmonid marble trout (Salmo marmoratus Cuvier 1817) living in the Soca and Idrijca river basins (Slovenia) to explore the influence of the total density experienced during and after the first year of life by marble trout year‐classes on body length of marble trout through the lifetime. Analyses were performed by pooling together the stream‐specific datasets to cover a wider range of densities. Mean body length of marble trout year‐classes through the lifetime (from age 1+ to 5+) was negatively related to total density of marble trout during the first year of life. The relationship between density during the first growth period and body length through the lifetime was well described by negative power curves. Total population density after the first year of life was not correlated with body length, thus suggesting that body growth trajectories are heavily determined early in life. Given size‐dependent sexual maturity and egg production in marble trout, the relationship between density early in life and lifetime individual growth may have strong implications in terms of population dynamics and regulation of population size.     

Spatial variability in the somatic growth of pikeperch Sander lucioperca,an invasive piscivorous fish

Introduced fishes can develop invasive populations that impact native species and ecosystems. Understanding the population ecology of introduced species in their extended ranges and how this compares to their native ranges is therefore important for informing their management. Here, the age and somatic growth rates of the piscivorous freshwater fish pikeperch Sander lucioperca were analysed across their invasive and native ranges to determine their spatial patterns and drivers. Analyses were initially completed in their invaded range in central and western England. Populations varied spatially in their growth rates; being slowest for a population in a narrow and shallow canal and fastest in a large, impounded lowland river. A meta‐analysis of parameters of the von Bertalanffy growth model then revealed that across their native and invasive ranges, their theoretical ultimate lengths (L_∞) and growth coefficients (K) were significantly related to latitude, but not longitude. Their relationships with latitude were nonlinear, with higher values of L_∞ and lower values of K being evident towards their northerly and southerly range limits. Faster growth rates were evident in the middle of their range (45 to 55°N), suggesting temperatures here were most optimal for growth, but were in a trade‐off with reduced ultimate lengths. These spatial patterns suggest that whilst introduced S. lucioperca can colonise new waters across a wide area, the expression of their life‐history traits will vary spatially, with potential implications for how invasive populations establish and integrate into native fish communities.     

Factors influencing growth of individual brown trout in three streams of the upper Midwestern United States

Growth rate variation of three age groups of brown trout, Salmo trutta L. (age‐0, 1 and 2, and 3+), was quantified from recaptured, individually tagged brown trout and related to season, stream reach, relative abundance, initial length and movement to examine factors influencing growth in length in three streams in the Midwestern United States. Total variation in growth was almost five times greater for age‐0 than for age‐3+ trout. Individual trout accounted for about 13% of total variation in age‐0 growth, season about 57%, and trout initial length and relative abundance combined another 2%. The 2006 age‐0 cohort had the fastest growth rates in their second spring and summer (2007) and slowest growth in their first winter (2006–2007). About 53% of total growth variation of age‐1 and age‐2 trout was accounted for by individual trout, season, initial length and stream reach. Predicted growth rates indicated strong effects of season and initial length. A significant interaction between these two factors indicated that, although smaller trout grew faster than larger trout, this length effect was most pronounced in spring and summer. About 35% of total growth variation of age‐3+ trout was accounted for by individual trout and season. Together, season and individual trout characteristics were identified as the most important factors influencing brown trout growth in these streams.     

Effects of dietary soy isoflavones on estrogenic activity,cortisol level,health and growth in rainbow trout,Oncorhynchus mykiss

Soy isoflavones (the phytoestrogens genistein, daidzein and glycitein) may act as estrogen receptor agonists or antagonists. The aim of this study was to examine the effect of dietary isoflavones on growth, reproduction and health in rainbow trout (Oncorhynchus mykiss). Rainbow trout fed three experimental diets containing different concentrations of isoflavones (0, 500 and 1,500 ppm). Growth, estrogenic activity, plasma estradiol levels, gonadal development, state of stress and histological changes in selected tissues were evaluated at the end of 70 days. Neither growth performance nor the relative mRNA levels of Insulin Growth Factor I (igf‐I) in the liver were influenced by different levels of dietary isoflavones. Plasma and liver vitellogenin (VTG) protein levels and plasma 17‐β‐estradiol (E₂) were unaffected by treatments, although the correlation between plasma levels of E₂ and VTG densitometry values was significant (p < .05). The fish gonadosomatic index (GSI) did not significantly differ among the three experimental groups but correlated with plasma VTG densitometry values (p < .05). Plasma, muscle and fin cortisol concentrations fell within the normal welfare range and were not correlated with isoflavone levels. Histologically, the distal intestine showed a normal morphology with well‐differentiated enterocytes and in the liver hepatocytes were also normal. A supranuclear accumulation of lipid droplets in enterocytes and some lipid droplets in hepatocytes were observed in all tested groups, suggesting an impact of basal dietary lipid on transport/metabolism of fat in the fish. Overall, the present results suggest that the doses of isoflavones tested do not compromise rainbow trout reproduction, growth and health.     

Age and growth of the largemouth perch Percichthys colhuapiensis in the Negro river, Argentine Patagonia

Largemouth perch (Percichthys colhuapiensis) represents one of the most economically important fish species in the Argentine Patagonia. However, little research has been done on the age and growth and population dynamics of this fish, though both studies are essential to properly deal with fisheries forecasts and management. As a contribution to elaborating management programmes for P. colhuapiensis, we evaluated the age and growth of this species in the Negro river via scale and whole otolith reading methods. The sample consisted of 579 specimens ranging in total length (TL) from 90 to 475 mm, captured seasonally from December 1994 to December 1995. The formation of scale annuli (end of winter) and the hyaline zone on otoliths (winter) of adult fish coincided with the beginning of the spawning season (end of winter-beginning of spring). The maximum estimated age was 11 years, which indicates that this is a relatively long-lived species. Otoliths were useful for ageing specimens 1–5 years-old, but above this age whole otoliths yielded lower age estimates than scales. Isometric growth of weight with length was found for total population, juveniles, and separate sexes (p > 0.25 in all cases). No significant differences between the length–weight relationships of sexes were observed (p > 0.10). Length at first maturity was significantly higher for males (TL₅₀ = 271 mm TL; r = 0.88) than for females (TL₅₀ = 243 mm TL; r = 0.96) (p < 0.01). Largemouth perch exhibited a consistent pattern of increase in length with age, with a period of fast growth during the first 5 years, and a slow-growing phase during the rest of his life. The growth parameters based on scale data were L∞: 462.1 mm, k = 0.23 and t₀ = −0.94 for total population, L∞: 402.3 mm, k = 0.33 and t₀ = −0.67 for males, and L∞: 548.4 mm, k = 0.15 and t₀ = −1.59 for females, whereas those based on otolith reading were L∞: 537.4 mm, k = 0.17 and t₀ = −1.0 for total population, L∞: 497.6 mm, k = 0.21 and t₀ = −0.79 for males, and L∞: 582.0 mm, k = 0.14 and t₀ = −1.53 for females. Scales are concluded to be the best structure to age P. colhuapiensis because they rendered L∞ values closer to the maximum TL observed, high precision, easiness of collection, low processing time, and the possibility of performing non-destructive monitoring studies.     

Evaluation of culture of the mussels Choromytilus chorus and Aulacomya ater (Molina) in northern coasts of Chile

The culture of Aulacomya ater and Choromytilus chorus in northern Chile was evaluated by collecting spat from both species from their natural environments and culturing them in an area isolated from natural populations. The spat collection at the site selected allowed the establishment of four cohorts of A. ater and six cohorts of Ch. chorus after 131 days. These cohorts were transported 250 km south for further growth, resulting in 290 ropes of Ch. chorus and 30 ropes of A. ater with an average of 900 specimens with a 13.5 mm mean size. After 29 months of cultivation, the yield was 623.7 ± 62.2 specimens of A. ater and 575.3 ± 49.3 specimens of Ch. chorus per rope of 3.5 m long. The growth attained during this period indicated values of L_∞ = 136 mm and k = 0.58 for Ch. chorus and L_∞ = 107 mm and k = 0.66 for A. ater. The Ch. chorus specimens reached greater lengths at month 15 than the A. ater specimens with the same age. For the total length–weight ratio and the soft part length–weight ratio for specimens above 60 mm in length, A. ater presented higher weights at the same lengths than Ch. chorus. We established that Ch. chorus reached its optimum soft part weight after 19 months and at a size of 82 mm, whereas this optimum was reached by A. ater after 18 months and at 68 mm. We concluded that farming both species in northern Chile was viable.     

Inter‐ and intra‐individual variability in growth and food consumption in pikeperch,Sander lucioperca L., larvae revealed by individual rearing

We examined short‐term, inter‐ and intra‐individual variability in rates of growth and food consumption in fish early life stages to gain a mechanistic understanding of why larvae in the same environments often grow at vastly different rates. We made parallel measurements of growth rate in standard length (GR_SL) and food consumption rate (C), and provide estimates of weight growth rate (GR_DW) and gross growth efficiency (GGE = 100*GR_DW/C) of individually reared larvae of pikeperch, Sander lucioperca L., fed Artemia nauplii at 20°C and a salinity of 2.0 g L^?1. Within two trials, GR_SL, C and GGE were obtained for 108 larvae over a maximum period of 28 days. Mean (±SD) initial size, GR_SL, C and GGE were 19.49 (9.19) mm, 0.68 (0.21) mm day^?1, 0.85 (0.44) mg day^?1 and 36.5 (10.2)% respectively. The vast majority (91%) of the variability in growth was explained by differences in food consumption. When isolated from conspecifics for 28 days, relatively small larvae grew faster than relatively large ones, partially mitigating initial differences in size‐at‐age.     

Adfluvial and fluvial life history variations and migratory patterns of a relict charr, Salvelinus confluentus, stock in west-central Idaho, USA

Abstract –  Life history strategies and migratory patterns of 71 adult radio-tagged bull trout, Salvelinus confluentus , were studied in the Secesh River watershed within the South Fork Salmon River (SFSR) sub-basin in west-central Idaho, USA during 2003 and 2004. In both years, upstream migrations occurred during late June and early July, migrations into two spawning tributaries during late July and early August, spawning from mid-August through mid-September, and rapid downstream (postspawning) migrations from late August to mid-September. Primary over-wintering areas were Loon Lake, the lower Secesh River (downstream of Loon Creek), and the lower SFSR (downstream of the confluence with the Secesh River). Loon Lake evidently provides sufficient production to allow the adfluvial life history strategy to persist and predominate in the Secesh River, while the fluvial life history strategy was previously found to predominate in the nearby East Fork SFSR. Adfluvial, nonconsecutive-year migrations were the predominant life history strategy. Only seven fish made consecutive-year migrations to Lake Creek; however, only one of these fish, a female, utilised a spawning tributary in both years and showed spawning tributary fidelity. Three consecutive-year migrants and three in-season migrants showed over-wintering site fidelity by returning to Loon Lake in September, 2004. The life history variations observed for bull trout in the Secesh River watershed are similar to those observed for bull trout throughout their range and to those of other charr species worldwide, yet the development of distinct migration patterns demonstrate the adaptability of the species to a range of available habitats.     

Growth trajectory analysis of Pacific whiteleg shrimp (Litopenaeus vannamei): Comparison of the specific growth rate,the thermal‐unit growth coefficient and its adaptations

Empirical growth models have widespread application in the field of aquaculture. These models allow estimates of harvest size and waste outputs in addition to nutrient and feed requirements. In an effort to increase the ability to predict shrimp growth, the specific growth rate (SGR) and thermal‐unit growth coefficient (TGC) models were fitted to 15 datasets encompassing growth of Pacific whiteleg shrimp (Litopenaeus vannamei). Shrimp were reared under commercial conditions in Southeast Asia with weights ranging from 0.01 g to 34 g. Growth rates were regressed against body weights to identify changes in growth pattern across life stages. Analysis identified two distinct patterns of growth, with a break point between stanzas at 7.5 g. The body weight exponent of the TGC model, traditionally assumed to be (1 ? b) = 1/3, was solved for iteratively in each identified growth stanza in an effort to improve the goodness of fit of the TGC model. Average body weight exponents in the first and second stanzas were 0.416 and 0.952 respectively. Projected growth trajectories using these exponents resulted in significantly better fits in comparison to the traditional TGC and the SGR on the basis of statistical measures of goodness of fit.     

Improvement of rotifer Brachionus plicatilis population growth dynamics with inclusion of Bacillus spp. probiotics

Due to growing interest in bacterial probiotic incorporation within juvenile marine finfish production, multiple commercial products are currently available. The following trial was conducted to test the effect of incorporation of a commercially available Bacillus spp. probiotic blend (EcoAqua) on population growth dynamics of the rotifer Brachionus plicatilis. Incorporation consisted of 0.1 mL L^?1 daily probiotic additions directly to rotifer cultures and 0.1 μL mL^?1 additions to feed mixtures during preparation. Probiotic‐treated cultures’ daily mean populations were found to be significantly greater (P_α(2),4,4 < 0.05) on multiple culture days. This trend was confirmed as significant (P_α(2),1,45 < 0.001) using ancova . Logistic population growth curves fit for each treatment were statistically non‐coincident (P_α(2),5,40 < 0.001). Substantial differences between treatment and control parameter estimates were observed; however, statistical comparisons could not be employed. Population variability was also reduced by probiotic inclusion as evidenced by lack of significant, positive correlation for probiotic daily population standard deviations (r = 0.0022, P = 0.99) and detection of a significant, positive correlation for control absolute value regression residuals (r = 0.50, P = 0.013) with Day of Culture. The tested bacterial probiotic improved rotifer culture population dynamics, suggesting potential production benefits from its utilization.     

Disentangling individual movement between populations from effective dispersal in the facultative anadromous Salmo trutta L.

Gathering information on both individual movement and gene flow is rarely possible when studying dispersal among populations in fish species. It is, however, possible to assess both at a reasonable cost in Salmo trutta L. on the Atlantic coast of Europe where the facultative anadromous species is composed of discrete populations of brown trout residents occupying distinct river systems, but exchanging phenotypically distinguishable sea trout migrants. We performed two kinds of genetic analyses using individual microsatellite genotypes: the stock identification of sea trout entering each corridor and the estimates of effective dispersal through each corridor. We observed that individual movement (nonlocal individuals of each source population ranging from 4% to 35% of the sea trout run) never translates into effective dispersal except in one of four migratory corridors examined. The likely origin of this uniquely detected gene flow event is discussed in the light of well‐documented migratory fish management actions undertaken in the past in the studied area.