Spatial and temporal variation in fish community structure and diversity in the largest tropical flood‐pulse system of South‐East Asia

The Tonle Sap River and Lake (TSRL) is South‐East Asia's largest tropical flood pulse with a flow‐reversal system that supports one of the world's largest freshwater fisheries. However, among the world's tropical floodplains, the resources of the TSRL have received little ecological research. Here, we described the spatiotemporal TSRL fish diversity and community variation using daily records from 2012 to 2015 on fish abundance from six sites covering the TSRL system. We found that high fish diversity occurred in sites located in the middle of Tonle Sap Lake, and the lowest diversity was observed in the southern section. The spatial abundance distribution patterns displayed a river–lake gradient, with three fish assemblages that were clustered based on their composition similarities and were characterised by 96 indicator species. In the southern section, fish assemblages were characterised by longitudinal migratory fishes; in contrast, in the middle system, fish assemblages were represented by species with combined ecological attributes (i.e. longitudinal and lateral migratory species and floodplain residents). Towards the northern section, fish assemblages were composed of lateral migratory and floodplain resident species. Species richness and abundance peaked at approximately 2–2.5 and 4 months, respectively, after the peak flow in early October, during which Tonle Sap River resumes its normal flow direction (outflow). This suggests that seasonal flood pulses (i.e. rising and falling water levels) play a pivotal role in structuring spatiotemporal variation in the TSRL fish assemblages. Our study has implications for fisheries monitoring and conservation initiatives.     

Flood duration determines the reproduction success of fish in artificial oxbows in a floodplain of a potamal river

Janáč M, Ondračková M, Jurajda P, Valová Z, Reichard M. Flood duration determines the reproduction success of fish in artificial oxbows in a floodplain of a potamal river.
Ecology of Freshwater Fish 2010: 19: 644–655. © 2010 John Wiley & Sons A/S. Abstract – Fish reproduction was studied in six man‐made water bodies (borrow pits) adjacent to the channelised Dyje River (Danube basin) over five seasons. Terrestrial vegetation provided spawning and nursery habitats when inundated by raised water levels in the borrow pits (hereafter referred to as ‘floods’). The diversity of 0+ fish and the density of 0+ cyprinids (mainly Abramis bjoerkna, Scardinius erythrophthalmus and Rutilus rutilus) in June–October were positively correlated with flood duration in previous months. The density of 0+ Perca fluviatilis was independent of the flood duration. The density of spawners and predators did not influence the diversity of 0+ fish and the density of 0+ cyprinids. Receding flood and associated lack of shelters resulted in decreasing density of 0+ cyprinids, numbers sometimes decreasing to zero. Prolonged floods facilitated the survival of 0+ fish and resulted in high 1+ cyprinid density in the following season. Specific hydromorphological conditions (e.g., the presence of shallow littoral zone or flooded vegetation) are necessary to enable successful spawning and provide shelters for 0+ fish in artificial water bodies.     

Water level influences migratory patterns of anadromous brown trout in small streams

Habitats modify the population ecology of species. Here, we show how low water level influences abundance and size of adult anadromous brown trout (Salmo trutta) entering a small, South Norwegian stream for spawning. After smolting, the fish appear chiefly to feed within 10 km of the home stream. In the autumn, South Norwegian streams typically flood because of heavy rainfall, when the anadromous brown trout entered from the sea. Mean annual duration of the upstream migration period was 34 days and ended when the flooding ended and the water temperature dropped to below 4°C. During most of the migration period, on average two trout ascended the river per day. The sexes entered the spawning area concurrently, and the male:female ratio of the anadromous trout was 1.27. No fish entered when the water depth just downstream of the spawning area was below 5 cm, and mean number of fish increased with increasing water depth to ca. 30 cm, but not at higher flows when the ascent gradually decreased. Mean and maximum size of the entering spawners increased with water depth between 5 and 16 cm. Among those that had been to sea, most were recaptured in the home stream, 4% in other streams, but only two of the strays were caught close to spawning time. The present results illustrate that population traits of anadromous brown trout from a small stream differ from those in larger rivers, probably because of selection associated with water flow.     

Temporal changes in the taxonomic and functional diversity of fish communities in shallow Chinese lakes: the effects of river–lake connections and aquaculture

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Hydrological connectivity in coastal inland systems: lessons from a Neotropical fish metacommunity

de Macedo-Soares PHM, Petry AC, Farjalla VF, Caramaschi EP. Hydrological connectivity in coastal inland systems: lessons from a Neotropical fish metacommunity.
Ecology of Freshwater Fish 2010: 19: 7–18. © 2009 John Wiley & Sons A/S
Abstract –  We assessed the influence of hydrological connectivity in structuring fish communities through seasonal samplings of environmental variables and fishes in a coastal lagoon and associated pools in the Restinga de Jurubatiba National Park, Brazil. Community structure attributes such as species richness, numerical density and biomass, Shannon–Wiener diversity index and evenness were compared between periods of the lowest and highest hydrological connectivity, while the environmental gradient and fish zonation were explored through ordination techniques. The greater hydrological connectivity established in the rainy season promoted the homogenisation of most environmental variables and fish species, which differed markedly from the arrangement observed in the dry season. Despite variation in fish species composition, community attributes showed non-significant differences between the dry and rainy seasons. The patterns of composition and numerical density in pools were strongly influenced by local factors, especially salinity, dissolved oxygen, total phosphorous concentration and water colour in the dry season, in addition to total nitrogen concentration and depth in the rainy season. Comparable to the role played by flood pulses in river-floodplain systems, the hydrological connectivity in these tropical coastal waterbodies seems to strongly influence fish community structure, and, therefore to determine regional biodiversity.     

Variability of fish densities in a small catchment

Abstract— Temporal and spatial variability of fish communities were examined within a 91-km² catchment in central New York over four years. Riffle-dwelling species, slimy sculpin Cottus cognatus , longnose dace Rhinichthys cataractae , and young-of-the-year brown trout Salmo trutta , were more strongly affected by flood and drought than pool-adapted species, adult brown trout, blacknose dace Rhinichthys atratulus , white sucker Catostomus commersoni , and creek chub Semotilus atromaculatus . Canonical correspondence analysis using seven abiotic variables (mean width, residual pool depth, water surface slope, mean Froude number, variance in Froude number, maximum monthly discharge and minimum monthly discharge) separated fish communities among sites and years. The first axis represented a headwater-to-valley gradient; the second axis reflected habitat complexity, based on both geomorphic and hydraulic features. Temporal differences in fish densities were related to hydrological factors. Fish communities throughout the catchment showed similar responses to flood and drought.     

耦合水文情势及鱼类繁殖的江垭水库生态调度需求研究（生态调度专刊）

大型水库实施生态调度是修复河流水文情势、维持河流生态系统健康的重要手段。江垭水库位于溇水干流下游的张家界慈利县，是澧水流域具有重要防洪意义的大型水库。本研究通过环境DNA采样、IHA水文指标变动分析和文献资料总结等方法，开展了江垭坝下水文情势及鱼类繁殖需求的关系研究，提出了江垭水库生态调度需求及建议。2021年9月在溇水干支流综合调查到鱼类55种，与上世纪90年代相比，流水性种类在干流江段显著减少了51.35%；按照生态调度优先等级评估原则，确定江垭水库生态调度的主要目标物种为产漂流性卵的银鲴、银鮈、贝氏?和产粘沉性卵的鲤、鲫；江垭建坝前后下游水文情势变化较大，发生高度改变且对鱼类洄游产卵及鱼卵发育有重要作用的水文指标包括：年最大1日、3日平均流量指标，年出现高流量脉冲事件的次数和持续时间，以及连续日流量上涨率。以促进坝下不同产卵类型的鱼类繁殖为目标，江垭水库生态调度一方面需要恢复一定的高流量脉冲次数和历时，另一方面需要控制下游的水位日降幅，通过泄放合理的生态流量来维持下游鱼类的生物多样性。     

Large‐bodied fish migration and residency in a flood basin of the Sacramento River,California, USA

River–floodplain complexes represent some of the most variable and diverse habitats on earth, yet they are among our planet's most threatened ecosystems. Use of these habitats by large‐bodied fishes is especially poorly understood, particularly in temperate regions. To provide insight into the factors that affect floodplain assemblages and migration, we sampled large‐bodied fishes with a fyke trap for 7 years in the Yolo Bypass, the primary flood basin of the Sacramento River, California. We collected a total of 18,336 individual fish comprised of 27 species, only 41% of which were native. Year‐round resident species white catfish Ameiurus catus, channel catfish Ictalurus punctatus and common carp Cyprinus carpio (all alien species) were the most abundant and comprised 74% of the total catch. Splittail Pogonichthys macrolepidotus (3.8%), white sturgeon Acipenser transmontanus (2.3%) and Sacramento sucker Catostomus occidentalis (1.1%) were the primary native species. We found that seasonal variation in water temperature and flood stage were important factors affecting the fish assemblage structure and the presence of migratory species. American shad Alosa sapidissima, an alien species, showed highest abundance during the early summer upstream migration, when temperatures were warmer. For native species, the abundances of white sturgeon, splittail, Sacramento pikeminnow Ptychocheilus grandis and Sacramento sucker were all highest during flood pulses. While our results suggest that flow alone is not sufficient to control alien species, the strong linkage between native fish migration and flow pulses highlights the importance of river–floodplain connectivity for the conservation of native fishes.     

Quantitative investigation of Enteromyxum leei (Myxozoa: Myxosporea) infection and relative condition factor in cultured olive flounder Paralichthys olivaceus (Temminck and Schlegel)

Enteromyxum leei has been reported to cause emaciation disease in various fish species. To determine the effect of parasite intensity on cultured olive flounder Paralichthys olivaceus, we investigated the relationship between the relative condition factor (rCF = CF/standard CF × 100) and parasite load with quantitative polymerase chain reaction (qPCR) and the challenge test. A total of 57 cultured olive flounders were obtained from 11 fish farms and divided into five groups based on their rCF. We investigated the parasite intensity in the posterior intestine of the fish. The parasite load was closely matched to severe loss of body weight. In addition, olive flounders were inoculated either orally or anally with intestinal scrapings of infected fish or phosphate‐buffered saline. The fish were reared at natural water temperature and transferred to different tanks, and the water temperature was adjusted to 20°C after 6 weeks of inoculation. When the water temperature was increased to 20°C, the rCF decreased in the experimentally infected group. The results demonstrated that qPCR can be utilized to determine the relative abundance of E. leei in olive flounders and water temperature is an important factor to track the progress of the emaciation disease.     

Temporal spawning migration patterns of landlocked Atlantic salmon (Salmo salar) in a constructed stream

Landlocked Atlantic salmon (ouananiche, Salmo salar) spawning migration timing varies throughout its range and is influenced by a variety of environmental variables. This study examined the spawning migration time of landlocked Atlantic salmon in a small (4 ha) constructed stream linked to a large reservoir (32,600 ha) in Newfoundland, Canada. Salmon use of the stream was passively monitored using Passive Integrated Transponder (PIT) Tags from 2006 to 2012. Of the salmon tagged throughout the reservoir, 48% entered the stream during the spawning season and remained there for 18–36 days from late September to November before they returned to the reservoir. Most fish entered the stream at dusk (32%). The lunar cycle influenced the timing of migration each year. Mean stream discharge (cubic metres per second) influenced migration timing in some years, and water temperature appeared to have minimal impact on migration timing. Twenty per cent of fish migrated to the stream in multiple years and 51% of these individuals appeared to use the stream on a biennial or alternate year cycle. These results demonstrate that small constructed streams can attract salmon from throughout a large reservoir and can provide valuable habitat in areas where spawning habitat is limited.     

Do fish isotopic niches change in an Amazon floodplain lake over the hydrological regime?

Floodplain lakes are ecosystems characterised by annual flood and dry cycles. Fish ecology is influenced by the flood pulse due to the large influx of allochthonous food resources and diversification of habitats during the flood cycle, while during the dry cycle, fishes tend to be confined in reduced habitat. The aim of this study was to evaluate the seasonal variation in trophic niche width and overlap of four species—Mylossoma duriventre, Prochilodus nigricans, Cichla.pleiozona and Serrasalmus rhombeus—in an Amazonian floodplain lake. Stable isotope analyses were used to estimate trophic niche width and overlap during the flood and dry seasons. We hypothesised broader niche width for all species during the flood cycle and a higher degree of overlap between the two piscivorous fishes during the dry cycle. Isotopic niche width was 72% broader for P. nigricans, 61% for S. rhombeus and 54% for C. pleiozona during the dry cycle, which did not support our hypothesis. Core niche width overlaps were not observed between piscivorous species in either flood or dry cycle. The results indicate that seasonal variation in isotopic niche width is specific to feeding habit. Understanding how fish trophic ecology responds to changes in the hydrological regime during the seasons is crucial for sustainable fishery management in a region where many people rely heavily on fish for nutritional and economic purposes.     

Incidence and timing of wild and escaped farmed Atlantic salmon (Salmo salar) in Norwegian rivers inferred from video surveillance monitoring

Run timing of escaped farmed Atlantic salmon Salmo salar vs. wild fish was compared by the use of video camera surveillance in 15 rivers over several years, covering 1600 km of the Norwegian coastline (from 58°N to 69°N). Annual runs of wild salmon varied among rivers from <200 fish to more than 10 000. During the surveillance period that for most rivers extended from late May to early October, larger‐sized salmon (fish ≥ 65 cm) generally entered the rivers earlier than small fish. The percentage of salmon identified as escaped farmed fish ranged from 0.1% to 17% across rivers with an average of 4.3%. Estimates of escapees are, however, assumed to represent minimum values because an unknown number of farmed fish passing the video cameras may have been misclassified as wild fish. By the use of a linear mixed model and generalised additive mixed models, it was found that the relationship between run timing and fish length differed significantly between farmed and wild salmon. While small‐sized farmed and wild fish (<65 cm) entered the river at about the same time, wild large salmon returned on average 1–2 weeks earlier than similarly sized escapees. The proportion of large‐sized farmed escapees also increased until late August and decreased thereafter. In contrast, there was a relatively constant and lower proportion of small‐sized escapees throughout the season. Within the surveillance period, there was no evidence of any exceptionally late runs of fish classified as escaped farmed salmon.     

Is current floodplain management a cause for concern for fish and bird conservation in Bangladesh's largest wetland?

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Influence of forest cover and mesohabitat types on functional and taxonomic diversity of fish communities in Neotropical lowland streams

Abstract – In this study, we investigated how taxonomic and functional diversity of fish communities is influenced by forest cover and mesohabitat types in Neotropical lowland streams. We sampled fish fauna of 126 five‐metre‐long mesohabitats using an electrofishing unit in forested (n = 3) and deforested (n = 3) streams in the upper Paraná River basin, south‐eastern Brazil. According to velocity and depth, three mesohabitat types have been considered: riffles (shallow and fast‐flowing habitat), pools (deep and slow‐flowing habitat) and runs (intermediate depth and velocity). Seven functional traits and 27 trait categories related to ecological, behavioural and life‐history aspects of fish were considered. Our results indicate that forest cover and mesohabitat type influence fish communities in different ways. Whereas deforestation affects communities primarily through changes in diversity (functional and taxonomic), mesohabitat types determine changes in the functional composition. The increased diversity in deforested mesohabitats is driven by a decrease in species turnover among habitat patches within streams. This can be attributed to new feeding opportunities and microhabitat availabilities in deforested streams so favours the occurrence of species having a particular set of traits, indicating a strong habitat–trait relationship.     

The impact of a hydroelectric dam on Neotropical fish communities: A spatio-temporal analysis of the Trophic Upsurge Hypothesis

We employed the trophic upsurge hypothesis as an analytical framework to describe the response of Neotropical fish communities to terrestrial inundation associated with river damming. Data were collected for the impact assessment of the Peixe Angical Dam, Tocantins River, Brazil. Monthly surveys were conducted at nine sites (seven upstream, two downstream) from 15 months before to 20 months after dam closure and a follow-up survey 60–83 months after closure. Fish responses differed in timing and magnitude across sites. In the new reservoir, populations peaked 8–13 months after flooding, demonstrating increases in richness (84 ± 52%), biomass (329 ± 266%) and abundance (681 ± 348%) with the maxima for richness and abundance tending to precede biomass maxima. Populations of all families increased but were greatest for Engraulidae, Hemiodontidae, Serrasalmidae and Characidae, and lower for the benthic catfish: Sciaenidae, Dorididae, Pimelodidae. Downstream populations peaked 5–12 months after closure or showed consistent decline. Five years after dam-closure richness and abundance were lower compared to predam levels, with populations at all sites demonstrating an ongoing decline. Reservoir creation triggers reproductive recruitment and otherwise pools spatially disparate populations from across the flooded valley. If the rise in richness is largely explained by the increased catchability of species otherwise present prior to flooding, it may be more appropriate to estimate species loss with reference to upsurge data. As peak biomass coincides with declining richness, modelling fisheries production from annually aggregated data may risk overestimating the potential for sustainable harvests. Upsurge–response curves can help identify the timing of critical ecological thresholds for flood-managed fisheries.     

Larval traits of the Caribbean amphidromous goby Sicydium punctatum (Gobioidei: Sicydiinae) in Guadeloupe

Amphidromous fish are the biggest contributor to the diversity of fish communities in river systems of Caribbean islands. Among them, Sicydium punctatum Perugia, 1896, which is endemic to the West Indies, represents the vast majority of fish in these rivers. The otolith microstructure and the biometry of S. punctatum postlarvae from Guadeloupe were investigated to explore the dispersal modalities of this species through an appreciation of the growth pattern, the pelagic larval duration (PLD) and the size‐at‐recruitment. The study was made on one cohort of 83 recruited postlarvae, fished at the Capesterre River's mouth on 2 November 2011. The mean (±SD) size‐at‐recruitment of the postlarvae was 24.6 ± 1.3 mm (range of 20.5–28.1 mm, n = 83). We found a mean (±SD) PLD of 72.2 ± 10.5 days (range of 54–101.5 days, n = 67). The growth rate estimated from the otolith increments showed a globally decreasing pattern during the marine larval phase. Growth rates at the beginning of the larval stage were significantly different between hatching periods, suggesting a relation between the hatching period and the growth rate in S. punctatum. This study adds on to the general understanding of the life cycle of S. punctatum in Guadeloupe that will help implement strategies to manage amphidromous fish populations in the Caribbean region.     

Validating timing of salmon smolt runs obtained by telemetry studies

Telemetry tags are increasingly used in management to monitor the migration timing of Atlantic salmon smolts (Salmo salar L.). It has been postulated that (1) effects from tagging and handling may alter migration behaviour, and (2) that the selection of fish during sampling is not representative of all migrating smolts, yielding bias in migration timing estimates. In the River Dale (Vestland, Norway), five groups of wild Atlantic salmon smolts (N = 385) were tagged in April–May and recaptured in a wolf trap. Migration timing was then compared to the untagged population. Migration timing differed between tagged (12 mm PIT) and untagged fish for 4/5 groups. Only fish tagged at the first time point did not have significantly different timing of migration from untagged counterparts. The relationship between length and the timing of migration was different for initial length and length at recapture; initial length suggested earlier migration of longer fish, but the extra time spent in the river prior to migrating for smolts that were initially smaller compensated for the size difference. The tagging protocol is crucial to obtaining representative migration timing results. Smolts should be tagged as early as possible and include the entire size distribution.