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1.
为研究乌鳢群体的遗传多样性和控制区结构,实验采用PCR和DNA测序技术对其线粒体DNA控制区序列进行比较。结果显示,用于分析的线粒体DNA控制区全长序列为905~908 bp。104个序列中共发现了37个多态位点,定义了27种单倍型。同时对控制区结构进行分析,识别了其终止序列区(ETAS)、中央保守区(CD)和保守序列区(CSB)的关键序列。3个地理群体的单倍型多样性(Hd)、核苷酸多样性(Pi)和平均核苷酸差异数(k)分别为0.875、0.003 27和2.939。群体间的平均Kimura双参数遗传距离(Kimura 2-parameter distance,K 2-P)、遗传分化指数(Fst)、基因交流值(Nm)和分子方差分析(AMOVA)均表明,3个乌鳢群体具有较高的遗传分化,白洋淀群体和平原县群体间存在一定的基因交流。  相似文献   

2.
根据线粒体D-loop序列研究了南四湖大鳞副泥鳅(Paramisgurnus dabryanus)群体(n=30)的遗传多样性。通过PCR技术对线粒体D-loop序列进行扩增,获得大小约1000 bp的扩增产物。PCR产物经纯化和测序后,得到了963 bp的核苷酸片段。用CLUSTALX软件进行排序比较,在30个个体中,共检测到33个变异位点,包括12个转换位点、21个颠换位点。运用MEGA5.0软件计算出不同个体间的遗传距离,并据此构建了UPGMA与NJ系统树。用DNASP软件计算出的单倍型个数(H)为15,单倍型多样性(h)为0.899,核苷酸多样性(pi)为0.008,平均核苷酸差异数(k)为7.79。结果表明,南四湖大鳞副泥鳅的mtDNA D-loop个体序列变异程度较大,遗传多样性较为丰富。  相似文献   

3.
根据线粒体COI基因序列分析了虫纹鳕鲈(MaccuUochellapeelii)引进群体的遗传多样性。用PCR技术扩增了线粒体C01的序列,PCR产物经纯化、克隆和测序后得到了652bp的核苷酸片段。运用CLUSTALX(1.83)软件比对了25个个体的序列,共检测到5个多态位点,其中4个为转换位点,1个为颠换位点;运用MEGA5.0软件构建了NJ系统树;用DNASP软件计算出的单倍型个数(H)为5,单倍型多样性(Hd)为0.300,核苷酸多样性(Pi)和平均核苷酸差异数(k)为分别为0.00073和0.473。结果表明,引进群体的虫纹鳕鲈mtDNAC01基因序列的变异程度较小,群体内遗传多样性较低。  相似文献   

4.
长江流域铜鱼和圆口铜鱼的遗传多样性   总被引:2,自引:2,他引:0  
利用线粒体DNA控制区序列多态性分析了长江流域铜鱼(Coreius heterodon)和圆口铜鱼(Coreius guichenoti)各4个群体的遗传结构;同时利用9对自行开发的多态性微卫星标记分析圆口铜鱼4个群体的遗传结构。结果显示,铜鱼线粒体DNA(mtDNA)D-loop序列共检出22个多态位点,28种单倍型,平均单倍型多样性指数(h)和核苷酸多样性指数(7r)分别为0.849和0.00257。圆口铜鱼线粒体DNA(mtDNA)D-loop序列共检出18个多态位点,28种单倍型,平均单倍型多样性指数和核苷酸多样性指数分别为0.902和0.00424。分子变异分析(AMOVA)结果提示,铜鱼和圆口铜鱼分别有98.80%和99.17%的遗传变异发生于群体内部,表明铜鱼和圆口铜鱼未出现种群分化。选用的9个微卫星标记在圆口铜鱼群体中共检测到48个等位基因;群体平均观测杂合度在0.631~0.753之间;平均期望杂合度为0.598-0.728:平均多态信息含量为0.548~0.670。结果表明,长江流域铜鱼遗传多样性较低,长江上游圆口铜鱼遗传多样性较高,且均未出现种群遗传分化。圆口铜鱼SSR固定指数为0.12l58,高于D.1oop固定指数,显示SSR标记对圆口铜鱼群体间遗传差异的检测更为灵敏。[中国水产科学,2008,15(3):377-385]  相似文献   

5.
中国近海黑鲷线粒体DNA控制区序列多态性分析   总被引:4,自引:0,他引:4  
采用聚合酶链式反应(PCR)和直接测序的方法,测定了广西北海、广东深圳和山东青岛3个地理群体共72尾黑鲷(Acanthopagrusschlegeli)线粒体Dloop第一高变区5′端547~549bp序列,以探讨黑鲷种群的遗传变异。分析结果表明:72条序列T、C、A、G4种核苷酸的平均含量分别为30.8%、21.8%、36.3%、11.0%。共检测到55个变异位点,其中转换位点32个,颠换位点19个,缺失/颠换位点1个,插入/颠换位点3个。72个个体具有51种单倍型(haplotype),单倍型比率为70.8%,黑鲷线粒体Dloop控制区表现出较为丰富的核苷酸多态性。对其所有单倍型依据序列距离使用NJ法构建的亲缘关系树并无明显的系谱分支,没有显示出明显的地理分布族群,说明黑鲷线粒体DNA控制区第一高变区序列无法用于黑鲷种群的鉴别。  相似文献   

6.
大鳞副泥鳅群体线粒体DNA D-loop序列遗传变异分析   总被引:2,自引:0,他引:2  
为探明大鳞副泥鳅野生资源状况,利用线粒体DNA D-loop序列,对天津5个大鳞副泥鳅自然群体的遗传多样性、遗传结构及种群历史动态进行分析。5个群体72个个体的D-loop基因序列全长912~914bp,其中多态性位点30个,共检测到22个单倍型,平均单倍型多样性和核苷酸多样性分别为0.813和0.0015,呈现高单倍型多样性和低核苷酸多样性的模式。5个群体间的遗传分化指数为-0.0205~0.0795,总的遗传分化指数为0.0712,属中等程度的遗传分化。单倍型网络进化图和单倍型系统发育树均未显示出明显的地理分布格局,中性检验和核苷酸不配对分布分析均表明,大鳞副泥鳅经历过种群扩张,扩张事件发生在第四纪更新世晚期。研究结果表明,应加强5个湿地大鳞副泥鳅群体的保护,适时开展大鳞副泥鳅良种选育工作,减少对大鳞副泥鳅野生资源的破坏。  相似文献   

7.
有效的人工增殖放流应监控放流群体和野生群体的遗传结构特征,以避免放流群体对天然群体遗传多样性的负面影响。本研究利用线粒体CO I和Cyt b基因分析了丹江口鲢库区、鲢亲本和鲢子代3 个群体的遗传结构特征。分析结果显示,104 条646 bp线粒体CO I序列中共检测到多态位点15 个,简约信息位点5 个,单一变异位点10 个,定义了7 个单倍型,单倍型多样性为0.544~0.676,核苷酸多样性为0.00221~0.00254;103 条1058 bp线粒体Cyt b序列中共检测到多态位点19 个,简约信息位点13 个,单一变异位点6 个,定义了14 个单倍型,单倍型多样性为0.609~0.714,核苷酸多样性为0.00262~0.00424,总体上处于较高单倍型多样性和较低核苷酸多样性。CO I和Cyt b序列遗传距离、遗传分化指数以及基因流分析结果显示,群体间遗传距离为0.002(CO I)、0.003~0.004(Cyt b),总的遗传分化指数为-0.00468(P>0.05)(CO I)、0.03180(P>0.05)(Cyt b),差异均不显著,群体间基因流为14.69~41.47(CO I)、5.49~40.47(Cyt b),分子方差分析(AMOVA)结果表明群体的遗传变异主要来自群体内。单倍型聚类关系树表明,3 个鲢群体间均存在共享单倍型,不同地理群体间单倍型散乱分布于各支,未形成地理群体的聚集。以上分析结果显示,3 个鲢群体间不存在明显的遗传分化,表明增殖放流鲢群体与丹江口库区野生群体的遗传多样性和遗传结构相近,可开展增殖放流。本研究结果可为丹江口鱼类增殖站鲢群体的增殖放流提供科学依据。  相似文献   

8.
根据线粒体COI基因序列分析了虫纹鳕鲈(Maccullochella peelii)引进群体的遗传多样性。用PCR技术扩增了线粒体COI的序列,PCR产物经纯化、克隆和测序后得到了652bp的核苷酸片段。运用CLUSTAL X(1.83)软件比对了25个个体的序列,共检测到5个多态位点,其中4个为转换位点,1个为颠换位点;运用MEGA5.0软件构建了NJ系统树;用DNASP软件计算出的单倍型个数(H)为5,单倍型多样性(Hd)为0.300,核苷酸多样性(Pi)和平均核苷酸差异数(k)为分别为0.00073和0.473。结果表明,引进群体的虫纹鳕鲈mtDNA COI基因序列的变异程度较小,群体内遗传多样性较低。  相似文献   

9.
不同倍性团头鲂群体的线粒体DNA 分析   总被引:2,自引:0,他引:2  
测定了来自5个不同倍性团头鲂(Megalobrama amblycephala)群体(4n-F1、正交3n、反交3n、异源3n、二倍体2n)57个个体的线粒体DNA控制区、细胞色素b基因、16S rRNA基因和COⅡ基因序列,通过对这4段基因序列的联合分析,研究了5个不同倍性团头鲂群体的遗传变异。这4个基因片段的长度分别为:控制区937bp,细胞色素b基因1140bp,16S rRNA基因片段564bp,COⅡ基因片段642bp。将4个基因片段合并为1条总长度为3283bp的片段:在这条3283bp片段中,T、C、A、G4种核苷酸的平均含量分别为27.18%、25.45%、30.71%、16.66%。57个个体中确定了55种单倍型,未发现群体间有共享的单倍型,五群体的单倍型多样度在0.9848-1.0000之间,显示不同倍性团头鲂群体内单倍型类型丰富。5个群体内各序列平均核苷酸差异数(目在8.000-24.273之间,核苷酸多样性指数(π)在0.2483%~0.7866%之间:群体间遗传距离范围为0.0039~0.0106,显示不同倍性团头鲂群体遗传多态性丰富。核苷酸多样性指数(π)、平均核苷酸差异数(K)和核苷酸序列间平均遗传距离在5个群体间的变化趋势一致,由大到小依次为反交3n、异源3n、正交3n、同源4n-F1、二倍体2n。而且,反交3n、异源3n、正交3n和同源4n-F1群体的核苷酸多样性指数(π)、平均核苷酸差异数(K)以及核苷酸序列间平均遗传距离均显著大于2n群体(P〈0.05)。结果表明,反交3n、异源3n、正交3n和同源4n-F1群体的遗传多样性水平显著高于2n群体。[中国水产科学,2008,15(2):222-229]  相似文献   

10.
中华鳖3个地理群体线粒体基因D-loop区遗传多样性分析   总被引:1,自引:0,他引:1  
采用PCR结合DNA测序技术和SSCP技术,分析了中华鳖3个地理群体线粒体DNA(mtDNA)D-loop区部分序列的变异及遗传多样性。在25个个体中,其碱基组成为A+T的平均含量(65.4%)高于G+C(34.6%),共检测到变异位点7个(约占总位点数的5.7%),转换/颠换值为2.76。核苷酸多样性(π)为0.019 95,平均核苷酸差异数(K)为2.453。25个个体分属6个单倍型,单倍型多样度(Hd)为0.707,单倍型间的平均遗传距离(P)为0.027。6个单倍型构建的UPGMA系统树聚为3个分支。结果表明,中华鳖群体mtDNA D-loop区序列存在着较丰富的变异和遗传多样性,日本鳖的遗传多样性比黄河鳖和黄沙鳖丰富,黄沙鳖与日本鳖、黄河鳖的遗传距离较远。而且PCR-SSCP可以检测到两种类型的电泳图谱,其中Ⅱ型均为日本鳖,该技术可用于78位TT←→AA颠换变异位点的检测。  相似文献   

11.
首次进行了中华绒螯蟹( Eriocheir sinensis)线粒体 DNA 12SrRNA的序列分析。参考果蝇、蚤状溞序列对中华绒螯蟹线粒体DNA 12SrRNA基因片段做了引物设计、PCR扩增及序列测定,结果得到 457 bp的碱基序列,其A、T、G、C含量分别为 159bp(34.79%)、177bp(38.73%)、51bp(11.16%)、70bp( 15. 32%),与果蝇、蚤状溞的相同基因片段的序列含量基本相似。  相似文献   

12.
采用PCR技术获得我国南海斜带髭鲷(Hapalogenys nitens)养殖及野生群体共50尾样品的mtDNA控制区全序列,长度范围788 ~790 bp;测得序列与GenBank下载的其他鲈形目鱼类D-loop全序列利用CLUSTAL X进行排序后,对控制区结构进行分析.识别了其终止结合序列区、中央保守区和保守序列区,指出了终止相关序列的主体是TACAT与其反向互补序列ATGTA以及一系列保守序列(CSB-F、CSB-E、CSB-D和CSB-1、CSB-2、CSB-3),并给出了其一般形式;此外,基于斜带髭鲷D-Loop全长序列,利用贝叶斯法构建了分子系统进化树.结果显示,斜带髭鲷养殖群体与野生群体部分样品各自紧密聚成一小支,而在整棵进化树上,养殖样品与野生样品相互交错聚集在一起,可见本研究海区斜带髭鲷养殖群体与野生群体之间的遗传差异分化不显著.  相似文献   

13.
采用PCR技术获得我国南海斜带髭鲷(Hapalogenys nitens)养殖及野生群体共50尾样品的mtDNA控制区全序列,长度范围788~790bp;测得序列与GenBank下载的其他鲈形目鱼类D-loop全序列利用CLUSTALX进行排序后,对控制区结构进行分析。识别了其终止结合序列区、中央保守区和保守序列区,指出了终止相关序列的主体是TACAT与其反向互补序列ATGTA以及一系列保守序列(CSB-F、CSB-E、CSB-D和CSB-1、CSB-2、CSB-3),并给出了其一般形式;此外,基于斜带髭鲷D-Loop全长序列,利用贝叶斯法构建了分子系统进化树。结果显示,斜带髭鲷养殖群体与野生群体部分样品各自紧密聚成一小支,而在整棵进化树上,养殖样品与野生样品相互交错聚集在一起,可见本研究海区斜带髭鲷养殖群体与野生群体之间的遗传差异分化不显著。  相似文献   

14.
The nucleotide sequences of DNA fragments amplified by polymerase chain reaction (PCR) from four different genomic regions of nine red sea bream iridoviruses (RSIVs) isolated from different species of fish, different areas and in different years in Korea were compared with the reported reference sequences. One isolate, RSIV Namhae, showed 100% homology to the reference sequences, while the other eight isolates, which appeared to contain identical nucleotide sequences, showed 96.6–98.9% homology with reference sequences depending upon the target regions of PCR gene amplification. However, differences in nucleotide sequences were not apparent between the RSIVs isolated in different locations, in different years or in different host species. We also cloned and sequenced the 3′ end flanking region (K1) of the DNA polymerase (DPOL) gene using the cassette ligation-mediated PCR method. This sequence was 4436-bp long and possessed two open reading frames (ORF-1 and ORF-2) oriented in opposite directions. The putative proteins encoded by these two ORFs could not be characterized by comparison with the proteins of other species in the data banks. The presence of the ribonucleotide reductase small subunit (RNRS) gene at the 3′ end of the K1 region allowed us to determine that these two genes, RNRS and DPOL, are separated 5508 bp and oriented in the same direction in the genome of RSIV. Moreover, it is of interest that a PstI-restriction fragment, of which the sequence but not the location within the RSIV genome had previously been reported, is located at nucleotide positions from 1096 to 2054, extending from within the ORF-1 region, spanning the intervening sequence between ORF-1 and ORF-2, and extending into the ORF-2 region. Various repeating sequences up to 86 bp were present at the 3′ ends of ORFs, especially within the nucleotide sequences at the 3′ terminus of ORF-2. No similarities were detected when the DNA sequences of the K1 region were compared to the DNA sequences of a repetitive element in the genome of other iridoviruses.  相似文献   

15.
ABSTRACT: Genetic polymorphism in kingfish, collected from coastal waters of Japan, Australia and New Zealand, were examined using microsatellite (MS) DNA and mitochondrial DNA (mtDNA) control region markers. Sixteen to 25.7 alleles per locus were observed in three MS markers, while the average observed (and expected) heterozygosities were 0.782 (0.918), 0.750 (0.809) and 0.650 (0.888) for Australian, Japanese and New Zealand kingfish, respectively. Twelve mtDNA haplotypes were detected by the digestion of control region sequences with five endonucleases: Hae III, Hinf I Mbo I, Rsa I and Taq I. Significant genetic divergence was observed between the kingfish population from Japan and those from Australia–New Zealand. There was no significant differentiation among the Australian and New Zealand population samples.  相似文献   

16.
通过对待鉴定的血液样品中线粒体控制区扩增和序列测定,并与基因库中序列比对分析,成功地对斑海豹进行了种类鉴定。本研究所用方法在野生珍稀动物的种类鉴定中有很好的应用价值。  相似文献   

17.
张凤英  马凌波 《海洋渔业》2004,26(2):147-151
本实验根据马蹄铁鲎mtDNA 12SrRNA基因序列进行了中华绒螯蟹mtDNA 12SrRNA基因的引物设计,并对长江、辽河、瓯江三水系各5个个体共15个个体进行了PCR扩增及其序列测定。结果表明,12SrRNA基因序列在长江种群、辽河种群、瓯江种群间几乎没有差异,仅在3号瓯江蟹415bp处发现有一碱基颠换,去掉两端引物共测定得到415bp的碱基序列,其中A、T、G、C含量分别为145bp(34.9%),165bp(39.8%),45bp(10.8%)和60bp(14.5%)。  相似文献   

18.
SUMMARY: To examine the population structure of the Japanese eel Anguilla japonica , mitochondrial DNA sequence analysis was made for various samples of glass eels that might reflect genetic characteristics of spawning aggregates. The mitochondrial DNA from a total of 51 glass eels collected at Tanegashima Island, Kanagawa and Ibaraki in different periods within an inshore migrating season was sequenced for a 615 base-pair fragment from the tRNAThr gene to the central part of the control region. The DNA region was so variable that no individual was found to possess the same sequence, although average sequence differences within samples (1.07–1.63) were not large. Average sequence differences between samples (1.22–1.57) were comparable to those within samples, suggesting no genetic heterogeneity among samples. Tree analysis of the sequences showed neither a geographical nor temporal structure of population. Furthermore, although all DNA sequences from the present study were different from one another, two sequences were found to be the same with those reported from individuals collected in different localities in different years. Altogether, the present mitochondrial DNA sequence analysis of glass eels did not provide any evidence for genetic subdivision of the Japanese eel population.  相似文献   

19.
ABSTRACT:   In order to assess a daily change of genetic variability during spawning season, hatched larvae of red sea bream sampled on different dates were assayed by polymorphic markers such as microsatellite DNA (msDNA) and mitochondria DNA (mtDNA) control region. Based on the microsatellite loci, the average number of alleles per locus ranged between 13.7 and 18.3. The expected heterozygosities ranged between 0.843 and 0.919. A total of 23 mtDNA haplotypes were detected via digestion of mtDNA D-loop sequences with five endonucleases: Taq  I, Alu  I, Mbo  I, Rsa  I and Hinf  I. Significant fluctuation of genetic variability during spawning season was detected by both types of DNA markers. It was suggested that the genetic variability was maintained by pooling the seed fish collected on different spawning dates in a hatchery.  相似文献   

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