Brook trout occupancy in rivers and streams of the Mixedwood Plains Ecozone,Ontario

Brook trout (Salvelinus fontinalis) are an iconic freshwater salmonid native to northeastern North America. They prefer cold, clean rivers and lakes, and have been culturally, socially and economically valued for decades. Overharvest and deforestation associated with European settlement in southern Ontario, Canada led to notable declines in brook trout abundance in rivers and streams by the late 1800s. Today, they are threatened by further habitat degradation, non-native species, and climate change. In this study, we document brook trout occupancy in rivers and streams of the Mixedwood Plains Ecozone in southern Ontario, between 1970–1980 and 2000–2010. We used generalised linear models to determine occupancy variation between the two time periods at five spatial scales spanning multiple watershed levels. We detected a decline in occupancy between time periods for the tertiary (from 23% to 17%) and quaternary (from 35% to 22%) watershed scales. In the Credit River-Sixteen Mile Creek watershed, mean occupancy decreased to a third of past estimate (from 31% to 10%). For a subset of 86 sites with overlapping sampling in both periods no temporal trend was detected, but a post-hoc analysis indicated low statistical power (0.07), which suggested that more intensive sampling would be needed to better quantify brook trout occupancy changes at this scale. The occupancies quantified for the past period in our study may serve as benchmarks for brook trout restoration efforts.     

Evidence of concealment behavior by adult rainbow trout and brook trout in winter

Abstract – There has been little investigation of the winter ecology of adult trout during winter, especially in regard to concealment behavior. We compared day vs night underwater counts of adult rainbow trout and brook trout from four streams. At water temperatures between 1°C and 9°C, daytime counts accounted for 44% and 16% of nighttime snorkeling counts for rainbow trout and brook trout adults, respectively. As winter progressed, nighttime counts declined more so for brook trout than rainbow trout, but the decline was not significant for either species. Nocturnalism of both species was higher in streams with colder water temperatures. We observed few fish within concealment structure; however, by electrofishing concealment habitat during the day, we captured 10 times more adult trout than we counted immediately beforehand by snorkeling. Adult trout were concealed in cobble-boulder substrate and woody debris during the day. ^Note     

Projected impacts of climate change on stream salmonids with implications for resilience‐based management

The sustainability of freshwater fisheries is increasingly affected by climate warming, habitat alteration, invasive species and other drivers of global change. The State of Michigan, USA, contains ecologically, socioeconomically valuable coldwater stream salmonid fisheries that are highly susceptible to these ecological alterations. Thus, there is a need for future management approaches that promote resilient stream ecosystems that absorb change amidst disturbances. Fisheries professionals in Michigan are responding to this need by designing a comprehensive management plan for stream brook charr (Salvelinus fontinalis), brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) populations. To assist in developing such a plan, we used stream‐specific regression models to forecast thermal habitat suitability in streams throughout Michigan from 2006 to 2056 under different predicted climate change scenarios. As baseflow index (i.e., relative groundwater input) increased, stream thermal sensitivity (i.e., relative susceptibility to temperature change) decreased. Thus, the magnitude of temperature warming and frequency of thermal habitat degradation were lowest in streams with the highest baseflow indices. Thermal habitats were most suitable in rainbow trout streams as this species has a wider temperature range for growth (12.0–22.5 °C) compared to brook charr (11.0–20.5 °C) and brown trout (12.0–20.0 °C). Our study promotes resilience‐based salmonid management by providing a methodology for stream temperature and thermal habitat suitability prediction. Fisheries professionals can use this approach to protect coldwater habitats and drivers of stream cooling and ultimately conserve resilient salmonid populations amidst global change.     

Brook trout (Salvelinus fontinalis) population dynamics and mottled sculpin (Cottus bairdi) occurrence in relation to acidic episodes in streams

We monitored water chemistry and populations of brook trout (Salvelinus fontinalis) and mottled sculpins (Cottus bairdi) in 5 streams and some tributaries to determine how the severity of acidic episodes (low pH and high Al) influenced density and distribution of these species. Among streams, Linn Run had the lowest pH (4.8) and highest concentrations of total dissolved Al (>400 μg-l^?1) during periods of high discharge. Densities of brook trout and mottled sculpins were low in Linn Run, but high in tributaries, where pH (6.5) and Al (30 μg-l^?1) remained well below lethal levels. Among the other streams, brook trout density was highest where the acidic episodes were least severe and the density of age-0 brook trout was lowest when precipitation during the early months of the year was above normal. Immigration of brook trout from downstream areas maintained populations in the stream segments subjected to severe episodes. Mottled sculpins were not found in streams with severe episodes.     

Increasing connectivity of Great Lakes tributaries: Interspecific and intraspecific effects on resident brook trout and brown trout populations

Understanding resident fish population responses to restored connectivity would enhance decision-making on dam removal and fish passage. Since such evaluations are limited in the Great Lakes region of North America, we compared abundance, survival, and growth of resident brook trout and brown trout between sets of Michigan streams where populations were or were not interacting with salmonid species that might be present if connectivity existed. We analysed data from 34 electrofishing index sites to compare resident trout populations between streams without versus with Great Lakes access (and migratory Pacific salmonids), and brook trout populations in Great Lakes inaccessible (land-locked) streams where brown trout were present versus absent. Great Lakes accessibility effects on fish density became increasingly positive for older age groups of brown trout while generally negative for all age classes of brook trout. Brown trout had consistently negative effects on brook trout density in land-locked streams. Increased connectivity had significant effects on annual survival for only one of seven trout age classes modelled, while intraspecific density-dependent effects on survival were significant in six models. Significant intraspecific effects on resident trout growth occurred for seven of eleven age classes examined. Negative interspecific effects of Great Lakes access on resident trout growth were most noticeable for age-0 and age-1 resident trout, age classes that likely compete with juvenile Pacific salmonids. Our findings provide a more robust understanding of how Great Lakes connectivity affects resident trout populations, highlighting negative influences of brown trout on brook trout and intraspecific density-dependent effects.     

Are native brook charr and introduced rainbow trout differentially adapted to upstream and downstream reaches?

Abstract— Due to species introductions, brook charr (Salvelinus fontinalis) and rainbow trout (Oncorhynchus mykiss) occur together in many North American streams and typically exhibit a pattern of distribution in which brook charr numerically dominate headwaters and rainbow trout dominate downstream reaches. It has been suggested that 1) the two species compete or 2) the two species do not compete because they are differentially adapted to environmental conditions found in upstream and downstream zones. We assessed whether there were differences in growth and macrohabitat (pool, run and riffle) selection of brook charr and rainbow trout in upper, middle and lower stream zones of a small Pennsylvania stream. Brook charr and rainbow trout placed in replicate paired enclosures set in upstream and downstream reaches showed no significant differences in growth and survival rates upstream, but brook charr had significantly greater growth rates than rainbow trout downstream. Enclosed fish and free-ranging fish both had negative growth rates during the summer. Enclosed fish lost significantly less weight than free-ranging fish. Instantaneous growth rates of free-ranging adult brook charr and rainbow trout from May to August were negative for both species in all stream zones. Underwater observations of adult brook charr and rainbow trout showed both species occurred significantly more often in pool macrohabitats than expected on the basis of macrohabitat availability, except for rainbow trout in the upstream zone. The proportion of pool macrohabitat was not significantly different among stream zones. Brook charr do not appear to be better adapted to upstream environments in Powdermill Run based on growth, survival and macrohabitat selection during summer. Negative biotic interactions acting along with differential environmental adaptations may explain the pattern of distribution of brook charr and rainbow trout in streams, but long-term transplant experiments with additional life stages will be necessary to examine this hypothesis.     

Changes in native bull trout and non‐native brook trout distributions in the upper Powder River basin after 20 years,relationships to water temperature and implications of climate change

Many bull trout populations have declined from non‐native brook trout introductions, habitat changes (e.g. water temperature) and other factors. We systematically sampled the distribution of bull trout and brook trout in the upper Powder River basin in Oregon in the 1990s and resampled it in 2013–2015, examined temperature differences in the habitats of the two species and analysed trends in temperatures in the light of possible increases associated with climate change. The species’ distributions are currently similar to those in the 1990s, except in one stream where bull trout declined. However, bull trout consisting of resident forms remain restricted to a few kilometres of habitat at the upper end of fish distribution. In streams where both species occur, the typical pattern was an intermediate zone of mixed bull trout, brook trout, and hybrids downstream of allopatric bull trout and allopatric brook trout extending farther downstream. Temperature differences between where bull trout and most brook trout occurred were small (0.5–1.0°C August mean). There were no statistical increases in water temperatures in nearby streams since the 1990s and no warming trends in air temperatures for the past 25–60 years. However, peak summer water temperatures are occurring about 3 weeks earlier than 25 years ago. Future effects of climate change, including possible increases in temperature, changes in timing and other factors (e.g. snowpack, flow and extreme events) remain a concern for the persistence of these populations. However, it is difficult to precisely predict where those changes will occur and what they will be.     

Are invasive and native trout functionally equivalent predators? Results and lessons from a field experiment

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Effects of exotic salmonids on juvenile Atlantic salmon behaviour

Abstract –  We examined the effects of two salmonid species, chinook salmon ( Oncorhynchus tschwaytscha ) and brown trout ( Salmo trutta ), both exotic species to Lake Ontario, on behaviour and foraging success of juvenile Atlantic salmon ( S. salar ), a native species to Lake Ontario, in an artificial stream. We found that both exotic species have effects on Atlantic salmon behaviour, but that neither had an effect on foraging success. These results may explain why the Atlantic salmon re-introduction programme in Lake Ontario has had little success, as more than 3 million exotic salmonids are released in Lake Ontario streams annually.     

Movement of brook trout (Salvelinus fontinalis) in four small subalpine streams in northern Colorado

We studied the movement of brook trout (Salvelinus fontinalis) in four small streams in northern Colorado using mark-recapture methods and weirs. The recapture rates of marked adult trout were low for all streams, and large numbers of unmarked adult trout, apparently immigrants, were found each year. Significantly more trout, immigrated into sections that were experimentally modified by installing low log dams, which increased depth, pool volume and the amount of overhead cover. The number of immigrant and resident trout was significantly related to the amount of cover in the sections. Resident trout were larger than immigrants in all streams in the last year of sampling. Most mobile brook trout moved upstream during summer on the two streams where weirs were operated, and upstream migrants were significantly larger than downstream migrants on both streams. We suggest that a high degree of movement may be an adaptive response by brook trout to the heterogeneous nature of small mountain streams.     

Effect of hook type and hook setting method on deep-hooking rates when bait fishing for trout in lentic waters

Fishing with circle hooks along with prescribed hook-setting methods can reduce deep-hooking rates in some fisheries, but baited circle hooks have not been evaluated in stillwater trout fisheries. Deep-hooking rates and catch probabilities were compared for cutthroat trout Oncorhynchus clarkii​ (Richardson), rainbow trout Oncorhyncus mykiss (Walbaum), cutthroat × rainbow trout hybrids, and brook trout Salvelinus fontinalis (MItchill) caught using three types of baited hooks (circle, intermediate circle and traditional J) and two hook-setting methods (active and passive) in several lakes containing naturally reared trout. Hook type had a negligible effect on deep-hooking rates, which averaged 20%. Actively setting the hook and fishing with a bobber both reduced deep-hooking rates, regardless of hook type. Larger fish were deeply hooked more frequently regardless of hook type. Catch probabilities were higher when active rather than passive hook-setting was used, particularly in combination with intermediate circle hooks. The present results, which indicate that circle hook use did not reduce deep hooking in lentic settings, contrast earlier studies done in lotic waters. Therefore, before proposing hook-type regulations intended to reduce deep hooking, fisheries managers should consider waterbody type in addition to fishing methods, fish size and species.     

Lack of genetic population structure of slimy sculpin in a large,fragmented lake

Most of what is known about sculpin population structure comes from research in streams; however, slimy sculpins are also a common benthic species in deep lakes. In streams, sculpins are considered to be a relatively inactive species, moving only small distances, and characteristically have high levels of genetic structure. We examined population genetic structure of slimy sculpin (Cottus cognatus) across multiple barriers and over distances up to 227 km in Lake Champlain (USA, Canada) and Lake Ontario (USA, Canada) to determine whether lake populations of sculpin are also highly structured. We predicted that slimy sculpin populations in Lake Champlain would be structured by six causeways as well as by distance, Lake Ontario populations would be structured only by distance, and differences between the lakes would be large relative to within‐lake differences. We examined microsatellite variation among 200 slimy sculpins from Lake Champlain and 48 slimy sculpins from Lake Ontario to evaluate patterns of population connectivity and structure. There was no indication of population substructuring within either lake but sculpin were genetically distinct between lakes. We conclude that there is a single, panmictic population of sculpin present in Lake Champlain and another potentially panmictic population in Lake Ontario, with no indication of genetic isolation by distance. Our results contrast with data from sculpin in streams, suggesting distance and habitat fragmentation exert little influence on population connectivity of benthic fish in lakes.     

Seasonal effects of macrophyte growth on rainbow trout habitat availability and selection in a low‐gradient,groundwater‐dominated river

Rainbow trout habitat use is often described in high‐gradient, runoff‐driven, heterotrophic streams where geomorphic features and overhanging riparian vegetation provide channel complexity and cover. However, many rainbow trout populations thrive in rivers with contrasting aquatic habitat. We describe rainbow trout habitat use in a low‐gradient, groundwater‐dominated tailwater river where river flow management and macrophyte growth and senescence largely govern available trout habitat. In the summers of 2013 and 2014, available aquatic habitat (depth, velocity, macrophyte cover, substrate size) was quantified, while individual trout location was determined by radio telemetry and linked to environmental variables. Detailed habitat surveys indicate that macrophyte cover increases throughout the summer and is a strong determinant of in‐stream habitat characteristics. Paired logistic regression shows that adult rainbow trout prefer greater depths. Water depth increases with macrophyte abundance at both reach and local scales as plants restrict flow, and available trout habitat is linked to this seasonal pattern. When macrophyte abundance is high, adult trout show secondary preference for localised areas of lower macrophyte cover but otherwise show no selectivity for macrophyte cover, velocity or substrate size. Results suggest that submerged aquatic plants increased the quantity and quality of rainbow trout habitat as a source of channel complexity and cover. Macrophytes may play a similar role in other low‐gradient streams and should not be overlooked by fisheries managers considering habitat suitability.     

Controls for trout and char migratory/resident behaviour mainly in stream systems above and below waterfalls/barriers: a multidecadal and broad geographical review

Northcote TG. Controls for trout and char migratory/resident behaviour mainly in stream systems above and below waterfalls/barriers: a multidecadal and broad geographical review. Ecology of Freshwater Fish 2010: 19: 487–509. © 2010 John Wiley & Sons A/S Abstract – Controls for trout and char migratory and resident behaviour in rivers and streams for above and below natural and man‐made waterfalls/barriers are covered in a multi‐decadal (1950–2000) and wide geographical review (North America, UK, Europe, Japan) that includes reference to over 380 publications. These note 53 for rainbow trout, 61 for cutthroat trout, 104 for brown trout, 47 for bull trout, 41 for brook trout, 35 for Dolly Varden and 42 for white‐spotted char, plus a few general contributions of relevance on some. For each of these species, there has been a major increase in relevant decadal publications since the early 1980s, no doubt in large part because of the upsurge in micro‐genetic methodology for DNA and related technology, coupled with a broadening of interest in stream migratory behaviour of salmonids. Main mechanisms for the control of stream migratory versus resident behaviour appear to cover an interplay among both genetic and environmental factors; in some populations and locations, genetic controls seem to be more important than environmental ones, but in others the reverse. Habitat degradation by various human activities and their introductions of non‐native fish species are becoming causes of reduction in abundance of above and below waterfall stream populations for several of these salmonid species.     

Assessing electric fishing sampling effort to estimate stream fish assemblage attributes

The EU Water Framework Directive (WFD) obligates authorities to assess the ecological status of rivers. The sampling of the fish assemblage must be based on a reliable and cost‐effective monitoring programme, and it should be optimised to measure the ecological quality cost‐effectively. The efficiency of single‐pass versus three‐pass backpack electric fishing was measured to assess ecological status. The data included 295 electric fishing samplings from 137 rivers in Finland and a 5‐year data series from six small forest streams in mid‐eastern Finland. Compared with three‐pass electric fishing, single‐pass electric fishing in the same area increased the risk of missing rare fish species and species with low catchability. The concordance of the calculated fish metrics (e.g. proportion of tolerant and intolerant species) between one‐ and three‐pass measurements was, however, high, suggesting that single‐pass electric fishing was a suitable sampling procedure to evaluate ecological status. Increasing the area sampled by single‐pass removals stabilised the variances in the fish metrics and similarity indexes. It was concluded that in small streams electric fishing an area 24–27 times the stream width and in general a minimum of 300 m², but preferably more than 450 m², was adequate to estimate fish assemblage attributes reliably in boreal streams.     

Seasonal movement,growth and survival of brook trout in sympatry with brown trout in Midwestern US streams

Seasonal patterns in growth, survival and movement of brook trout Salvelinus fontinalis were monitored in two southeastern Minnesota streams divided into study reaches based on brown trout Salmo trutta abundance. We estimated survival and movement while testing for effects of stream reach and time using a multistrata Cormack–Jolly–Seber model in Program MARK. Multistrata models were analysed for three age groups (age‐0, age‐1 and age‐2+) to estimate apparent survival, capture probability and movement. Survival varied by time period, but not brown trout abundance and was lower during flood events. Age‐0 brook trout emigrated from reaches with low brown trout abundance, whereas adult brook trout emigrated from downstream brown trout‐dominated reaches. Growth was highest in spring and summer and did not differ across streams or reaches for the youngest age classes. For age‐2+ brook trout, however, growth was lower in reaches where brown trout were abundant. Interspecific interactions can be age or size dependent; our results show evidence for adult interactions, but not for age‐0. Our results suggest that brook trout can be limited by both environmental and brown trout interactions that can vary by season and life stage.     

Distribution modelling to guide stream fish conservation: an example using the mountain sucker in the Black Hills National Forest,USA

• 1. Conservation biologists need tools that can utilize existing data to identify areas with the appropriate habitat for species of conservation concern. Regression models that predict suitable habitat from geospatial data are such a tool. Multiple logistic regression models developed from existing geospatial data were used to identify large‐scale stream characteristics associated with the occurrence of mountain suckers (Catostomus platyrhynchus), a species of conservation concern, in the Black Hills National Forest, South Dakota and Wyoming, USA.
• 2. Stream permanence, stream slope, stream order, and elevation interacted in complex ways to influence the occurrence of mountain suckers. Mountain suckers were more likely to be present in perennial streams, and in larger, higher gradient streams at higher elevations but in smaller, lower gradient streams at lower elevations.
• 3. Applying the logistic regression model to all streams provided a way to identify streams in the Black Hills National Forest most likely to have mountain suckers present. These types of models and predictions can be used to prioritize areas that should be surveyed to locate additional populations, identify stream segments within catchments for population monitoring, aid managers in assessing whether proposed forest management will potentially have impacts on fish populations, and identify streams most suitable for stream rehabilitation and conservation or translocation efforts.
• 4. When the effect of large brown trout (Salmo trutta) was added to the best model of abiotic factors, it had a negative effect on the occurrence of mountain suckers. Negative effects of brown trout on the mountain sucker suggest that management of recreational trout fisheries needs to be balanced with mountain sucker conservation in the Black Hills. However, more spatially explicit information on brown trout abundance would allow managers to understand where the two species interact and where recreational fisheries need to be balanced with fish conservation.

Copyright © 2008 John Wiley & Sons, Ltd.     

Association of brook trout and Oncorhynchus spp. with large wood jams in a Lake Superior tributary in a northern old‐growth watershed

Wood in streams functions as fish habitat, but relationships between fish abundance (or size) and large wood in streams are not consistent. One possible reason for variable relationships between fish and wood in streams is that the association of fish with wood habitat may depend on ecological context such as large‐scale geomorphology. We studied the relationship between salmonid assemblages and large wood jams (LWJ) in four settings that differed geomorphically at the scale of the stream corridor along a tributary to Lake Superior in old‐growth conifer–hardwood forest in northern Michigan. The focal fish species of this study were brook trout (Salvelinus fontinalis), which were wild in the stream. Relocation efforts for coaster brook trout (an adfluvial life history variant of brook trout) were ongoing in the study stream. We measured fish abundance and length in pairs of pools of similar size and substrate, but varying in the presence of LWJ; this allowed us to evaluate associations of fish simply with the presence of LWJ rather than with other channel or flow‐shaping functions of LWJ. The length of Oncorhynchus spp. and young introduced brook trout was not strongly correlated with LWJ presence; however, the presence of LWJ in pools was positively correlated with larger wild brook trout. We also found that the correspondence of LWJ with the abundance of salmonids appears to be moderated by the presence of alternative habitat in this relatively natural, old‐growth forest stream.     

Spawning salmon increase brook trout movements in a Lake Michigan tributary

Abstract – Salmon and trout have been introduced to many ecosystems worldwide, yet the ecological impacts of salmonid introductions remain poorly understood. We investigated the effects of introduced Pacific salmon on stream‐resident fish in the Great Lakes basin by monitoring the movements of passive integrative transponder (PIT)‐tagged brook trout in a Lake Michigan tributary receiving a salmon spawning run and in a nearby stream not receiving salmon. Coincident with the September arrival of salmon, an estimated 52% of resident brook trout moved >200 m, while no such movements were detected in the nonsalmon stream. After 3–4 days, however, brook trout movement patterns became similar in the two streams, suggesting that salmon effects on brook trout movements were short‐lived. Movements in the salmon stream were predominantly upstream in direction, with 50% of the tagged brook trout travelling from below to above the stationary PIT tag readers during the study. Declining water temperatures with the onset of fall coincided with low levels of brook trout movement at both sites, likely due to relocation for spawning. Increased brook trout movements coincident with the arrival of salmon spawners could be driven by a combination of interference competition and egg consumption. Using a bioenergetics model, we estimated that the energy lost to movement was likely compensated by the energy obtained from consuming salmon eggs. We conclude that salmon spawners can substantially increase brook trout movement, but in our study, these effects were short‐lived and likely negligible from a bioenergetics perspective.     

An alien fish threatens an endangered parasitic bivalve: the relationship between brook trout (Salvelinus fontinalis) and freshwater pearl mussel (Margaritifera margaritifera) in northern Europe

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