Linking coastal aquaculture of meagre Argyrosomus regius and Western Mediterranean coastal fisheries through escapes incidents

Escape incidents in coastal aquaculture lead to economic losses for farmers and may have indirect socio‐economic effects on local fisheries. In this study, the relationship of meagre, Argyrosomus regius (Asso), production in open‐sea cages and coastal small‐scale fisheries was analysed through captures of escapes, which are easily detected because this species is considered locally absent in native communities in Western Mediterranean regions. Scale reading showed that 100% of captured meagre were escapees. The existence of a direct relationship, in terms of biomass, between the development of meagre coastal aquaculture and the increase of captures of this species by local fisheries was demonstrated. The spatial distribution of meagre captures suggested that there is a local environmental and economic interaction between meagre aquaculture and fisheries through escapees. Monitoring the presence of locally absent species such as meagre within landings might help to assess the magnitude of escapes, the potential economic effects on local aquaculture and fishery industries, and the potential adverse ecological impacts on local ecosystems.     

Population structure of the migratory fish Prochilodus lineatus (Characiformes) from rio Grande basin (Brazil), an area fragmented by dams

• 1. Prochilodus lineatus (Prochilodontidae, Characiformes) is a migratory species of great economic importance both in fisheries and aquaculture that is found throughout the Jacuí, Paraíba do Sul, Paraná, Paraguay and Uruguay river basins in South America. Earlier population studies of P. lineatus in the rio Grande basin (Paraná basin) indicated the existence of a single population; however, the range of this species has been fragmented by the construction of several dams. Such dams modified the environmental conditions and could have constrained the reproductive migration of P. lineatus, possibly leading to changes in the population genetic structure.
• 2. In order to evaluate how genetic diversity is allocated in the rio Grande basin, 141 specimens of P. lineatus from eight collection sites were analysed using polymerase chain reaction–restriction fragment length polymorphism (PCR‐RFLP) with 15 restriction enzymes.
• 3. Forty‐six haplotypes were detected, and 70% of them are restricted. The mean genetic variability indexes (h = 0.7721 and π = 1.6%) were similar to those found in natural populations with a large effective size. Fst and Exact Test values indicated a lack of structuring among the samples, and the model of isolation by distance was tested and rejected.
• 4. The haplotype network indicated that this population of P. lineatus has been maintained as a single variable stock with some differences in the genetic composition (haplotypes) between samples. Indications of population expansion were detected, and this finding was supported by neutrality tests and mismatch distribution analyses.
• 5. The present study focused on regions between dams to serve as a parameter for further evaluations of genetic variability and the putative impact of dams and repopulation programmes in natural populations of P. lineatus. Copyright © 2011 John Wiley & Sons, Ltd.

     

The hidden companion of non‐native fishes in north‐east Atlantic waters

A tropicalization phenomenon of ichthyofauna has been described in the last decades in Galicia (north‐eastern Atlantic), with increasing reports of tropical and subtropical fishes appearing northward this distribution range. A search for parasites was carried out in the digestive tract of two specimens first captured in Galician waters: the prickly puffer Ephippion guttifer (Tetraodontidae) and the African stripped grunt Parapristipoma octolineatum (Haemulidae). Examination of E. guttifer showed high intensity of nematodes, from three different genera: Cucullanus (Cucullanidae), Hysterothylacium (Raphidascaridae) and Anisakis (Anisakidae), with demonstrated pathogenicity to humans. Molecular identification allowed the identification of Anisakis pegreffii, already described in the area, and first reports for European waters of Cucullanus dodsworthi, Hysterothylacium reliquens and a new Hysterothylacium sp. P. octolineatum showed a far lower level of parasitization, with two Hysterothylacium larvae, genetically identified as Hysterothylacium deardorffoverstreetorum, also its first report in the eastern Atlantic. Thus, possible ecological impact of the occurrence of two non‐native individual fishes in a new area could be remarkably higher if we see this issue through the lens of the parasitological perspective, as far as only two individual fish can harbour more of one hundred nematode parasites belonging to different species, most of them also new species for that area.     

Use of an acoustic telemetry array for fine scale fish behaviour assessment of captive Paiche,Arapaima gigas,breeders

As Arapaima gigas is one of the most valuable species for the growing production of Amazonian aquaculture, knowledge of its reproductive behaviour and its application to increase reproduction success in captivity is of great importance as no hormonal spawning induction technique exists for this species. An acoustic positioning system (LOTEK Inc.) was used to observe the interactions of adult fish to better understand the formation of mating pairs. Fish were placed in a 4,500 m² aquaculture pond over a 6‐month period in the IIAP field station of Pucallpa, Perú. This paper describes the methodological protocols used to set up and test the hydrophone array and presents the methodology used for the analysis of the huge amount of collected data. This methodology is illustrated by the analysis of a 6‐day period for a mating pair that showed a spawning event. The results indicated that male and female occupied mostly one preferential area in one pond edge where the nesting area is located. Different activity patterns were observed during the spawning event, with male and female being closer during the spawning day. The results also showed that male travelled less distance than female during the studied period. Finally these results demonstrated the suitability of such equipment to monitor fish interactions at fine spatial (sub meter) and temporal (5 s) scales in confined environments like aquaculture ponds.     

The effects of trout culture on diet and food availability of native freshwater fish populations

Cultivation of a species or population and distribution to various regions has raised the idea of negative impacts on native species. The effect of non‐native species on native species may be caused by competition for source, predation, hybridization, and parasite/disease transport. The present study aims to evaluate the possible effects of a trout farm established on the banks of Kocaba? Stream (Çanakkale, Turkey) on feeding characteristics of some freshwater fish (Phoxinus phoxinus, Barbus oligolepis, and Squalius cii). The samples were collected monthly over a year at two stations located before and after the trout farm and at a control station on the tributary not impacted by the effects of the farm. Fish and environmental samples were gathered monthly with an electroshocker and some fishing tools between August 2015 and July 2016. The fish diet and resource incorporation into biomass were evaluated by gut content and stable isotope analyses. Changes in diet preferences when the species are exposed to source stresses and some individuals fed on farm‐based feed contaminated from the farm in Kocaba? Stream. In this study, it was observed that native fish populations in aquaculture regions were influenced by diet preferences. Designing enclosed systems limiting feed and waste transit in aquaculture establishments may be suitable for sustainability of these species.     

Genetic parameter estimates for growth‐related traits of blunt snout bream (Megalobrama amblycephala) using microsatellite‐based pedigree

Blunt snout bream (Megalobrama amblycephala) is an herbivorous freshwater fish species native to China and has been recognized as a main aquaculture species in the Chinese freshwater polyculture system with high economic value. The genetic parameter estimates for important economic traits are needed for its selective breeding. The aim of this study was to estimate the heritabilities for its growth‐related traits and explore the genetic and phenotypic correlations among the traits using microsatellite‐based pedigree approach. Offspring from a mass‐spawning of 92 broodstocks (42 sires and 50 dams) were reared in a communal pond and nine microsatellites were used to identify the parents of each sampled offspring. Of 749 offspring randomly selected, 708 (94.53%) could be assigned directly to a single parental pair, which was used for heritability estimates. Data were analysed using the method of restricted maximum likelihood (REML) using animal model and the results showed that the heritabilities of body weight, body length, total length and body height were 0.65, 0.53, 0.53 and 0.50, respectively. High genetic correlations were found among these four traits. According to these results, selection for growth seems to be feasible in M. amblycephala and the other growth traits will be heightened accordingly with the selection based on body length.     

DNA barcoding reveals blend of silver catfish Rhamdia species from fish farms in Southern Brazil

Rhamdia quelen is the most produced native freshwater fish in fish farms in South Brazil. Until recently, Rhamdia branneri and Rhamdia voulezi were synonyms of R. quelen, and all the species are commercialized as silver catfish (locally called jundiá or bagre sapo) by the aquaculture industry. In fact, because these species are morphologically very similar, interspecific crosses easily might occur in fish farming. We employed standard DNA barcoding to identify jundiá molecular operational taxonomic units (MOTUs) in fish cultivated and commercialized in the industry and in possible escapees in the natural environment in southern Brazil. We analysed 48 individuals from six fish farms and 48 individuals from three rivers (Uruguay, Benedito Novo and Itapocu Rivers) using the mitochondrial cytochrome oxidase subunit I (COI). Four MOTUs were identified based on the estimated optimum threshold (OT = 0.77), and these MOTUs were concordant with Bayesian Inferece (BI) and Neighbour‐Joining (NJ) trees. Our results support the existence of at least three species in our dataset: R. branneri, R. voulezi, and R. quelen 1 and R. quelen 2. The interspecific genetic divergence ranged from 1.1% to 5.1% (mean = 3.5%), and the intraspecific distance ranged from 0% to 1.4% (mean = 0.24%). The presence of cultivated fish in the Uruguay and Benedito Novo Rivers provides evidence of genetic contamination in native populations. These results show the need to regulate aquaculture activities and to characterize the species and commercial lineages of silver catfish that are cultivated in South Brazil.     

Molecular identification and distribution of mangrove oysters ( Crassostrea) in an estuarine ecosystem in Southeast Brazil: implications for aquaculture and fisheries management

This study investigated the existing species of Crassostrea in the natural environment, farming systems and artificial spat collectors at a protected estuarine area in Brazil, through PCR‐RFLP of mitochondrial 16S rRNA. Among 450 samples collected in the natural environment, 303 were C. brasiliana and 147 C. rhizophorae. Oysters present in the rocky subtidal zone were C. brasiliana. However, both species occurred on mangrove roots in the intertidal zone. Farm‐raised samples included only C. brasiliana. It was observed that attached specimens in commercial collectors had a banding pattern distinct from C. brasiliana and C. rhizophorae, indicating the presence of a third species in the estuary. The 16S rRNA sequence analysis showed that these specimens are clustered with the oysters from Pacific and Indian Oceans, and genetically close to the oysters of Beihai, China (0.3% genetic distance). Oysters obtained from the seed capture showed 17.8% distance of in relation to C. brasiliana, 17.6% for C. rhizophorae and 10.3% for C. gigas, demonstrating high genetic divergence from these species. The occurrence of an exotic species in the Cananéia estuary may have strong ecological and economic implications which require new guidelines for farming, conservation and sustainable fisheries management for the native oyster species.     

The relevance of mitochondrial lineages of Taiwanese cultured grey mullet,Mugil cephalus,to commercial products of Roe

Mugil cephalus is an important aquaculture species in Taiwan with highly valuable roe. In order to obtain its roe, mullet fry from various Taiwan estuaries are raised in aquaculture ponds until maturity. However, not all female mullets have developed ovaries. Therefore, we have attempted to use DNA profiling to aid selection of mullet fry for aquaculture. A large proportion of North coast mullet and some West coast mullet were identified as cytochrome oxidase subunit I (COI) mitochondrial lineage 1. COI mitochondrial lineage 2 was dominant in the west and east coast estuaries, whereas COI mitochondrial lineage 3 was fewest and only was present in Chang‐hua county (middle west of Taiwan). The gonadosomatic index (GSI) of lineage 1 individuals ranged from 0 to 5, no matter where the mullet fry were captured. The GSI of both the west and east coast lineage 2 individuals ranged from 0 to over 15, but the GSI of lineage 2 of the I‐lan (north east of Taiwan) population was generally lower than that of western populations. These findings suggest that a genetic difference whereby west coast lineage 2 mullet yield heavier roe although the body size of lineage 1 individual is larger than that of lineage 2. Thus, lineage 2 individuals with their normal GSI distribution are the most economically viable. The application of the rapid screening of mitochondrial lineages is expected to help aquaculture farmers cultivate lineage 2 fry for roe production rather than lineage 1.     

Fish farming of native species in Colombia: current situation and perspectives

In Colombia and the rest of the world, the decrease in capture fisheries production has turned the aquaculture into an alternative source of protein for the populations food security as well as an important productive activity, generating employment and income for the rural communities. The Colombian pisciculture is based on red Tilapia Oreochromis sp. (Linnaeus), Rainbow trout Oncorhynchus mykiss (Walbaum) and cachama blanca Piaractus brachypomus (Cuvier), which currently represent around 96% of the total national production. The remaining 4% comes from other farmed species such as bocachico Prochilodus magdalenae (Steindachner), carp Cyprinus carpio (Linnaeus) and yamúBrycon amazonicus (Spix & Agassiz). From the three main fish species, cachama blanca is the only native species, which has shown excellent performance in pond farming due to its rusticity, omnivorous habits, docility, meat quality, food conversion and disease resistance. The limited offer of Colombian fish farmed species determines its currently low competitiveness and restricted impact on the international markets; thus making necessary to explore the potential of new fish species in order to introduce them to the pisciculture system and to expand the range of fish farming species. A good alternative is the introduction of native catfish, which have great potential for fish farming activity.     

Pelagic larval duration of three amphidromous Sicydiinae gobies (Teleostei: Gobioidei) including widespread and endemic species

Sicydiinae species have an amphidromous life cycle during which they undergo a pelagic larval phase allowing them to disperse through the ocean and to recruit in distant island rivers. Hypotheses for the differences observed in dispersal abilities between species include the variation in pelagic larval duration (PLD). However, the implication of the PLD as a proxy for explaining the dispersal ability of a species is not clear in the Sicydiinae subfamily. In this study, otolith microstructure of three Sicydiinae species was analysed. One of these species, Sicyopus zosterophorum, has a widespread distribution in the West Pacific area, whereas the other two species, Smilosicyopus chloe and Akihito vanuatu, are endemic to New Caledonia and to Vanuatu, respectively. Deposition of the daily growth increments on the otoliths of S. zosterophorum was validated using an alizarin complexone time marking technique. We estimated the PLD for the three species by counting the number of growth increments from the core to the metamorphosis check mark, and it was shorter than the one of previous studies on Sicydiinae species. The PLD of the widespread species, S. zosterophorum (54.6 ± 5.6 days), was similar to those of the endemic species, S. chloe (53.6 ± 5.7 days) and A. vanuatu (55.4 ± 7.5 days). Here, we show that in contrast to the most diverse Sicydiinae genus, Sicyopterus, the PLD could not explain endemism, and we must take into account other elements to explain the differences observed in the distribution range.     

Assessing the impacts of the introduced channel catfish Ictalurus punctatus using the comparative functional response approach

In the metric “Relative Impact Potential” (RIP), the functional response (FR) of a non‐native species can be compared with that of a native analogue and combined with the species abundance to predict its environmental impact. Here, using the River Guaraguaçu (Brazil) as a case study, this methodology was implemented to identify the impacts of the non‐native channel catfish Ictalurus punctatus (Rafinesque) compared with a native species Rhamdia quelen (Quoy & Gaimard) towards small prey fish. Both species exhibited Type II FRs, but handling times were lower for I. punctatus, resulting in a greater maximum feeding rate in this species. Consequently, an RIP > 1 was found, indicating that I. punctatus represents a superior impact to prey compared with its native analogue. These results demonstrate that I. punctatus is a potential threat to small endangered fish species; therefore, policies to avoid escapes from aquaculture should be created and the abundance of I. punctatus controlled.     

Voracious invader or benign feline? A review of the environmental biology of European catfish Silurus glanis in its native and introduced ranges*

A popular species for food and sport, the European catfish (Silurus glanis) is well‐studied in its native range, but little studied in its introduced range. Silurus glanis is the largest‐bodied freshwater fish of Europe and is historically known to take a wide range of food items including human remains. As a result of its piscivorous diet, S. glanis is assumed to be an invasive fish species presenting a risk to native species and ecosystems. To assess the potential risks of S. glanis introductions, published and ‘grey’ literature on the species’ environmental biology (but not aquaculture) was extensively reviewed. Silurus glanis appears well adapted to, and sufficiently robust for, translocation and introduction outside its native range. A nest‐guarding species, S. glanis is long‐lived, rather sedentary and produces relatively fewer eggs per body mass than many fish species. It appears to establish relatively easily, although more so in warmer (i.e. Mediterranean) than in northern countries (e.g. Belgium, UK). Telemetry data suggest that dispersal is linked to flooding/spates and human translation of the species. Potential impacts in its introduced European range include disease transmission, hybridization (in Greece with native endemic Aristotle’s catfish [Silurus aristotelis]), predation on native species and possibly the modification of food web structure in some regions. However, S. glanis has also been reported (France, Spain, Turkmenistan) to prey intensively on other non‐native species and in its native Germany to be a poor biomanipulation tool for top‐down predation of zooplanktivorous fishes. As such, S. glanis is unlikely to exert trophic pressure on native fishes except in circumstances where other human impacts are already in force. In summary, virtually all aspects of the environmental biology of introduced S. glanis require further study to determine the potential risks of its introduction to novel environments.     

An artificial oyster‐shell reef for the culture and stock enhancement of sea cucumber,Apostichopus japonicus,in shallow seawater

Because of its high nutritional value and health benefits, aquaculture production of Apostichopus japonicus in China is the largest of any single species. Therefore, the development of new farming methods is of considerable significance. In this study, discarded oyster shells have been used to create an artificial reef for the culture of this species. The results have shown that from 6th March 2009 to 26th November 2009, the wet weight of sea cucumber increased from 49.57 ± 1.16 to 79.87 ± 1.46 g ind^?1. Between 16th July and 18th October, the specific growth rate and daily weight gain of A. japonicus differed significantly from other periods. Population density was higher within the reef compared with outside the reef area, and the difference was significant (P < 0.01). The maximum distance between A. japonicus individuals within the reef area on 3rd March and 16th July was 65.0 ± 3.3 and 62.9 ± 4.4 cm, respectively, but the difference was not significant (P > 0.05). The diatom species attached to the oyster shells were similar to those found in the stomach content of A. japonicus. In conclusion, the oyster‐shell reef provides a suitable habitat and shelter for the culture of the sea cucumber, A. japonicus.     

Long‐term records (1781–2013) of European eel (Anguilla anguilla L.) production in the Comacchio Lagoon (Italy): evaluation of local and global factors as causes of the population collapse

1. Several eel species have undergone extensive declines at both local and global level. The aim of this study was to identify the reasons for the collapse of the European eel (Anguilla anguilla) stock in an important area for biodiversity conservation (Comacchio Lagoon, Italy), in order to support the development of eel conservation plans.
2. The records of silver eel catches from Comacchio describe the total migratory population and cover the period 1781–2013. The data are accompanied by information related to habitat loss and other local factors. The role of local factors on the decline of the local stock was investigated, while additional information from the literature was also used to discuss the effects of global factors (including glass eel harvest for aquaculture, climate–oceanographic changes, habitat loss, pollution and parasitism) on the three eel species A. anguilla, Anguilla japonica and Anguilla rostrata.
3. The records from Comacchio provided significant information about the effects of local factors on the local eel populations in the past. However, the current population collapse, which started in the 1970s, could not be explained by local factors.
4. The literature on global factors suggests that the three eel species are under combined threat from various factors. The correlations between European aquaculture production data compared with the Comacchio yields and published data from other European eel and glass eel fisheries were found to be highly significant. Aquaculture, which depends entirely on wild‐caught glass eels, seems to play a key role in the decline of natural stocks.
5. Conservative estimates using FAO data showed that the current numbers of glass eels needed to support aquaculture production in Europe and Asia exceeds 2 × 10⁹ specimens. This requirement, largely supplied by A. anguilla glass eels, can explain the decline of eel populations since the glass eel trade has been expanded at an international level.

Copyright © 2016 John Wiley & Sons, Ltd.     

Identification and characterization of the pathogen associated with skin ulcer syndrome in lined seahorse,Hippocampus erectus

The lined seahorse, Hippocampus erectus, is an Atlantic species, which mainly inhabits shallow sea beds or coral reefs. Seahorse has become very popular in China due to its wide use in traditional Chinese medicine (TCM). However, the aquaculture of the lined seahorse has been threatened by a variety of diseases, especially bacterial infections. Skin ulcer syndrome becomes more and more common in the culture of seahorses, leading to skin ulcer, liver erosion and minority tail rotting. These diseased seahorses die in only 72 hr, causing huge economic losses in aquaculture. Pathogen HMT‐1 was isolated from the lined seahorses with skin ulcer syndrome, which was identified as Vibrio harveyi. The median lethal dose (LD₅₀) of HMT‐1 was 2.88 × 10⁸ cfu/ml. The pathogenic mechanism of HMT‐1 was preliminarily studied, and the pathological changes of the diseased lined seahorses were also investigated. Moreover, the activities of ACP, complement 3, SOD and LZM at different time post injection were measured by commercial kits. Our findings can provide reliable reference for diagnosis and treatment in the future.     

A review of nutritional biology and dietary requirements of redclaw crayfish Cherax quadricarinatus (von Martens 1868)

Redclaw crayfish (Cherax quadricarinatus, von Martens 1868) is a freshwater decapod crustacean with a number of biological and commercial attributes that make it an excellent aquaculture species. The redclaw aquaculture industry has been growing rapidly since the mid‐1980s in tropical and subtropical regions of the world. Redclaw aquaculture is mostly in extensive pond systems, but interest in developing more intensive systems is increasing. To support continued intensification, development of high‐quality practical diet formulations and information about redclaw nutrition requirements are necessary. A number of studies have determined optimum dietary protein and lipid requirements for juvenile redclaw. However, there is limited information on essential amino acid and fatty acid requirements. Several studies report the presence of various digestive enzymes that have been linked to the ability of the species to digest a wide range of dietary components. Furthermore, as in many other aquaculture species, there is a need to replace fishmeal with other protein sources. A number of studies explored the possibility of replacing fish meal with various terrestrial plant sources of protein and lipids and showed that redclaw can be offered diets containing low‐cost, plant‐based ingredients without compromising survival, growth and, to a certain extent, reproduction. Formulated diets containing less expensive, plant ‐ based ingredients will contribute to a more profitable and environmentally sustainable redclaw aquaculture industry. Finally, there is also a paucity of information on vitamin and mineral requirements of redclaw and little information on nutrient requirements of broodstock. For the redclaw aquaculture industry to thrive, we need to have a better understanding of nutrient requirements at all life stages.     

Current knowledge of nocardiosis in teleost fish

Nocardia sp. is the causative agent of nocardiosis, a lethal granulomatous disease of the skin, muscle, and various inner tissues affecting various teleost and shellfish. Four species of Nocardia have been isolated from diseased fish and shellfish, namely Nocardia asteroides, Nocardia seriolae, Nocardia salmonicida and Nocardia crassostreae. Therefore, in fish aquaculture, nocardiosis has caused severe economic losses, especially in the Asian region. Considerable research has been performed, since the first report of identified Nocardia sp. in fish, to characterize Nocardia sp. and identify rapid detection techniques, immune response against infection and prophylactic approaches. In this review, the current state of knowledge about nocardiosis in fish has been presented, including the pathogenesis, diagnosis, host immune response and vaccine development.     

Isolation and evaluation of putative probiotic strains from different teleost to prevent Pseudomonas aeruginosa infection in Cyprinus carpio

Probiotics renowned as valuable microbes serve as a potential alternative to control diseases in aquaculture and are considered as an efficient and environment‐friendly approach to reduce the use of antibiotics. The present study aims at the isolation of putative probiotic bacteria from the intestinal tract of different fish species from the Doaba region of Punjab, India. In this study, isolated bacterial strains were characterized based on their morphological, biochemical and molecular characterization by 16S rRNA gene sequencing, followed by in vitro evaluation of different selection parameters described in FAO/WHO guidelines. A total of 169 different bacterial strains were isolated from the gastrointestinal tract of 52 different fish species. After in vitro evaluation, out of 169 bacterial strains only five bacteria (S3, S7, BDK2', BDK7 and BDK9) identified as Enterococcus and Bacillus species showed antagonistic activity against the fish pathogen Pseudomonas aeruginosa (MTCC 4 673). These isolates were screened based on their response towards bile tolerance, pH tolerance, adhesion and drug susceptibility to different antibiotic discs. And, the in vivo results indicated improved growth and survival against the infection (P. aeruginosa) after oral administration of the probiotics. The observations of in vitro and in vivo evaluation indicate that these isolated probiotic strains serve as effective probiotics and can be used as a novel and safe treatment to cure current issues in aquaculture.