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1.
  1. Changes in mangrove forest cover (increases and decreases) have been observed globally as a result of the influence of environmental changes and human impacts. Although mangrove forest increases are globally uncommon, in New Zealand mangroves are increasing in distribution at the expense of other intertidal estuarine habitats.
  2. This study quantified the change in mangrove area over a period of 74 years (1940–2014), and investigated the influence of land‐based (e.g. land use conversion in the catchments), climatic, and oceanic factors on the change in temperate mangrove forest cover in the Auckland Region of New Zealand over that period.
  3. An improved mapping approach using aerial photographs and Landsat images was applied to quantify changes in tall and dwarf mangrove cover, and to identify the mechanism of change (expansion, gap filling, and loss), across 38 estuaries in the Auckland Region, New Zealand.
  4. Mangrove area increased from 2313 ha in 1940 to 10 483 ha in 2014 (on average 3.2% yr?1), with higher rates in small estuaries (<1000 ha) than in large estuaries (>1000 ha). The area of the intertidal mudflat habitat, i.e. potential area for mangrove colonization, has doubled from 14 193 ha in 1974 to 28 764 ha in 2014. The increase in total mangrove area was explained primarily by gap filling followed by expansion. The proportion of expansion‐related increase was predominantly seaward (82%) but mangroves also expanded upstream (16%).
  5. Boosted regression tree analysis revealed that catchment forest cover, sea level, and mean annual air temperature explained around 85% of the variation in mangrove area. Periods of catchment forest clearing coincided with gains in mangrove forest area. Dwarf mangroves were more sensitive to changes in sea level, in particular over the past 25 years, when the annual sea‐level rise exceeded the sediment accumulation rates.
  6. Catchment land use, especially the clearing of forests, associated with increased sediment supply into estuaries is the strongest driver of mangrove forest gain. Thus, land‐use management is a necessary aspect of the management of New Zealand estuaries to conserve the diversity of estuarine habitats (including mangroves) and the ecosystem services that each habitat provides.
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2.
  1. Although it is well established that human activities are linked to the loss of seagrasses worldwide, the influence of anthropogenic disturbances on the habitat fragmentation of seagrass meadows is less understood. This information is essential to identify how humans are modifying seascapes and what disturbances pose the greatest risk to seagrasses, which is pertinent given the rapid urbanization occurring in coastal areas.
  2. This study examined how the habitat fragmentation of an endangered seagrass Posidonia australis varied in relation to several anthropogenic disturbances (i.e. human population, marine infrastructure, terrestrial run-off and catchment land-usage) within 10 estuaries across 620 km of coastline in New South Wales, Australia.
  3. When comparing between estuaries, the fragmentation of P. australis meadows was significantly greater in estuaries adjacent to highly populated metropolitan centres – generally in the Greater Sydney region. At sites within estuaries, the density of boat moorings was the most important predictor of habitat fragmentation, but there was also evidence of higher fragmentation with increased numbers of jetties and oyster aquaculture leases.
  4. These results suggest that the fragmentation of seagrass meadows will become more pervasive as the human population continues to grow and estuarine development increases. Strategies to mitigate anthropogenic disturbances on seagrass meadow fragmentation could include prohibiting the construction of boat moorings and other artificial structures in areas where seagrasses are present or promoting environmentally friendly designs for marine infrastructure. This knowledge will support ongoing management actions attempting to balance coastal development and the conservation of seagrasses.
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3.
  1. The Maugean skate, Zearaja maugeana, is endemic to two isolated western Tasmanian (Australia) estuaries. The species' persistence in one of these estuaries (Bathurst Harbour) is uncertain, while the other estuary (Macquarie Harbour), potentially the remaining stronghold for the species, is an anthropogenically impacted system.
  2. Key life-history parameters were studied to inform conservation actions for this species. Reproductive information was obtained using non-lethal methodologies, circulating concentrations of sex steroids and ultrasonography. Growth and age parameters were estimated based on vertebral sections from a small sample of individuals.
  3. Females and males reached 870 and 760 mm total length, respectively. The species reached a maximum age of at least 10 years. Females and males attained 50% sexual maturity at 665 and 633 mm total length, respectively, probably maturing somewhere between four and six years of age. Females displayed an asynchronous, discontinuous reproductive cycle, being able to reproduce throughout the year, with a probable decline in reproductive activity during summer. No egg cases were observed in-utero. Males produce sperm all year round, with a peak in testosterone production during spring–autumn.
  4. Conservation strategies for Z. maugeana will need to focus on reducing anthropogenic impacts on the environmental health, the primary impacts being altered river flows associated with the production of hydroelectricity and increased nutrient load associated with salmonid aquaculture. There is a need to better understand how reproductive success, egg survival and recruitment are affected by these environmental challenges if the future well-being of this species is to be secured.
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4.
  1. Based on optimal foraging theory, animals are expected to maximize foraging benefits whilst minimizing risks. Despite risking being subjected to anthropogenic impacts such as water contamination, marine traffic, and underwater noise, estuaries have been identified as the preferred habitat of the Indo‐Pacific humpback dolphin (Sousa chinensis, IPHD). However, it remains unclear why this vulnerable species favours such risky habitats.
  2. Here, an exploratory case study in Zhanjiang estuary, China, was conducted to test the hypothesis that IPHDs select estuarine habitats as a trade‐off that maximizes foraging opportunities whilst minimizing the risk of mortality.
  3. The results showed that IPHDs accept greater mortality risks for higher food rewards but select habitats with lower risks when food rewards are similar between two locations.
  4. Although this type of information is important for underpinning models for individual dolphins, its principal role is to show environmental protection agencies why IPHDs favour estuaries despite the increased mortality risks.
  5. Habitat conservation plans should carefully consider prey stocks, possibly through the presence of marine protected areas near estuaries, as local overfishing may lead vulnerable cetacean populations to take greater risks.
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5.
  1. Island nations such as New Zealand provide valuable insights into conservation challenges posed by strongly connected and recently developed or exploited freshwater and marine ecosystems.
  2. The narrow land mass, high rainfall, and steep terrain of New Zealand, like many other island nations, mean that land‐based stressors are rapidly transferred to freshwater habitats and propagated downstream to coastal environments via short, fast‐flowing river systems.
  3. Freshwater and marine environments are linked through faunal life histories; for example, diadromous fishes, many of which are considered threatened or at risk of extinction, and require cross‐ecosystem conservation to ensure survival of critical life stages and persistence of source populations.
  4. Recent invasions of marine and freshwater environments by non‐indigenous species reveal rapid impacts on a naïve biota and highlight conservation conundrums caused by management aimed at enhancing native biodiversity by improving habitat connectivity.
  5. Understanding and managing interconnected freshwater and marine ecosystems is a key concept for local indigenous communities, and highlights socio‐cultural connectivity and sustainable local harvesting of traditional resources as key elements of contemporary marine and freshwater conservation planning in New Zealand.
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6.
  1. Estuaries are critical to the life histories and development of many marine species, and support some of the most productive aquatic ecosystems. However, owing to their geographic accessibility, many estuaries face considerable anthropogenic threats, which can be exacerbated in developing nations.
  2. Understanding the ecological implications of anthropogenic activities as a precursor to dedicated conservation activities requires comprehensive assessments of baseline trophic relationships. This study addresses a shortfall in such information for two tropical, coastal ecosystems globally identified as priority areas for biodiversity conservation: the Paranaguá estuarine complex; and the Cananéia–Iguape estuarine lagoon system in southern Brazil.
  3. Ecological relationships were investigated through carbon and nitrogen stable isotope (δ13C and δ15N) determination in sediments, plant fragments and the muscle tissues of marine species occupying different trophic levels, including benthic invertebrates, ichthyofauna (Stellifer rastrifer, Paralonchurus brasiliensis, and Isopisthus parvipinnis), and delphinids (Sotalia guianensis and Pontoporia blainvillei).
  4. Isotope ratios facilitated distinguishing plant fragments, sediments (which were terrestrially influenced) and biota (predominantly marine influenced). However, despite variation among anthropogenic stressors, isotope ratios did not vary between the studied estuaries, implying similar impacts on trophic relationships which might reflect some inter‐estuary mixing.
  5. All ichthyofauna and the delphinids had similar generalist diets and shared the same trophic niche, which may reflect their consistent spatio‐temporal distributions and habitat patterns in the estuaries. The data illustrate the utility of isotopically characterizing biodiversity‐hotspot estuaries as a mechanism for rapidly assessing ecological relationships between key species and regional habitats. Such an approach can be used to evaluate ecological connectivity as a baseline for management and might be applied more broadly, embracing multiple regions as part of estuarine and coastal biome conservation efforts.
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7.
  1. Long‐term monitoring is a prerequisite to understanding and protecting long‐lived species such as cetaceans. In New Caledonia, South Pacific, an endangered sub‐population of humpback whales (Megaptera novaeangliae) seasonally congregates for mating and nursing during the austral winter. For more than two decades, dedicated surveys have been conducted at sea and from land to monitor humpback whale presence in a coastal breeding site, the South Lagoon.
  2. Methods were developed to investigate space use patterns and their temporal variations over the long term using a joint dataset of boat‐based and land‐based observations (1995–2017). A total of 2651 humpback whale groups were observed, including 1167 from land and 1484 at sea (of which 30% were initially detected by the land‐based observers).
  3. Humpback whales displayed a persistent space use pattern over this 23 year period, consistent social composition over the years, and an increase in the group encounter rates from land and at sea. The core area of use by humpback whales was characterized in the austral winter by stable and relatively low sea surface temperature (22°C). Whales consistently occupied nearshore waters from 10 to 200 m deep and open to the ocean. Waters surrounded by dense coral reefs were avoided.
  4. Although humpback whale distribution patterns were persistent and occurrence was found to increase over two decades, a mismatch between humpback whale critical habitat and marine protected areas was revealed. In the context of growing anthropogenic pressure from tourism and industrial development, these findings should be incorporated into local management efforts to protect the endangered Oceania humpback whale in one of its main breeding sites.
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8.
  1. Understanding the ecological and evolutionary processes that occur during range shift or (re-)colonization is of critical importance for species whose ranges are changing due to human-induced climate change or species such as New Zealand sea lions where their established colonies are significantly declining due to human impacts.
  2. The mechanisms underlying colonization are poorly understood. Observations are required to determine the processes that change individual's behaviour associated with colonization, but such observations are rare.
  3. Here, the establishment of a new breeding colony of New Zealand sea lions, Phocarctos hookeri, as they recolonized mainland New Zealand, an area from which they had been absent for ~200 years was investigated.
  4. There are differences in breeding location behaviour and population connectivity between established and establishing colonies of New Zealand sea lions. The recolonizing population is more dispersed with breeding locations that change annually and have more connections with other populations compared with established colonies and populations.
  5. The establishment of a new colony and the greater numbers of resightings between colonies means that for species' management, considerably more public education, habitat management, and protection is needed to ensure the safe return of New Zealand sea lions back on to mainland New Zealand.
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9.
  1. Predictive species distribution models (SDMs) have become powerful tools to determine habitat use patterns of mobile marine predators and their spatial overlap with potentially impacting anthropogenic activities.
  2. This study used SDMs to investigate fine‐scale habitat use patterns of two poorly known and broadly sympatric coastal delphinids, Chilean dolphins (Cephalorhynchus eutropia) and Peale's dolphins (Lagenorhynchus australis), and their spatial interactions with intense aquaculture farming activities in the Chiloé archipelago, southern Chile.
  3. A long‐term dataset (2002–2012) of boat‐based dolphin sightings and concurrently in situ collected environmental and anthropogenic variables was analysed using binomial Generalized Additive Models to investigate ecological drivers of each species' fine‐scale distribution and to predict dolphin occurrence spatially.
  4. Chilean dolphins preferred shallow (<30 m deep), turbid waters, close to shore (<500 m) and river mouths which often placed them in sheltered bays and channels used intensively by shellfish farms. Peale's dolphins were also found in shallow waters but occurred over a wider range of conditions along more open or exposed coastlines. Both species had to navigate extensive salmon and shellfish farming sites to transit between areas of important habitat.
  5. Sightings and predicted occurrence maps showed a clear pattern of spatial habitat partitioning between species, which remained stable across the 11 year study period. The identification of important habitat for Chilean dolphins warrants the consideration of spatially explicit conservation measures to limit the potential effects of overlapping salmon and shellfish farming.
  6. The observed differences in ecological plasticity of the two sympatric species should be considered when evaluating and mitigating the effects of environmental change and ongoing anthropogenic pressures on their nearshore habitat. The estimated species–environment relationships could also be used to predict where dolphin habitat and anthropogenic activities are most likely to overlap in other parts of the species' ranges.
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10.
  1. The influence of anthropogenic habitat loss on animal distribution and core habitat use can be particularly strong in animals with narrow habitat selectivity, such as the Indo‐Pacific humpback dolphin (Sousa chinensis), a delphinid species that specifically inhabits coastal and estuarine waters.
  2. This study measured the extent of habitat loss in the waters around Xiamen City, China, where intense environmental changes and coast utilization have occurred in the past 40 years. The extent of occurrence and the core habitat of the humpback dolphin were measured based on sighting records from censuses conducted in different years.
  3. A Landsat image series revealed a permanent 119.95 km2 loss of coastal waters to land reclamation, coastal modification and harbour construction from 1973 to 2013. The distribution of the humpback dolphin showed a significant shift from inshore to offshore waters and away from artificial shorelines. Though the extent of occurrence appears to change minimally, a significant shift in the core habitat from the original coastal habitats into mid‐channel waters was observed in the eastern Xiamen Bay.
  4. These results imply multiple consequences of anthropogenic coastal alterations for the humpback dolphin: the elimination of vital habitats, changes in habitat use preferences, and the partitioning of the social structure of the population.
  5. The need to adjust current protected area designations along with adequate measures to restore habitat quality and population connectivity, both locally and regionally, are considered.
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