Association of brook trout and Oncorhynchus spp. with large wood jams in a Lake Superior tributary in a northern old‐growth watershed

Wood in streams functions as fish habitat, but relationships between fish abundance (or size) and large wood in streams are not consistent. One possible reason for variable relationships between fish and wood in streams is that the association of fish with wood habitat may depend on ecological context such as large‐scale geomorphology. We studied the relationship between salmonid assemblages and large wood jams (LWJ) in four settings that differed geomorphically at the scale of the stream corridor along a tributary to Lake Superior in old‐growth conifer–hardwood forest in northern Michigan. The focal fish species of this study were brook trout (Salvelinus fontinalis), which were wild in the stream. Relocation efforts for coaster brook trout (an adfluvial life history variant of brook trout) were ongoing in the study stream. We measured fish abundance and length in pairs of pools of similar size and substrate, but varying in the presence of LWJ; this allowed us to evaluate associations of fish simply with the presence of LWJ rather than with other channel or flow‐shaping functions of LWJ. The length of Oncorhynchus spp. and young introduced brook trout was not strongly correlated with LWJ presence; however, the presence of LWJ in pools was positively correlated with larger wild brook trout. We also found that the correspondence of LWJ with the abundance of salmonids appears to be moderated by the presence of alternative habitat in this relatively natural, old‐growth forest stream.     

The use of artificial temporary streams with and without shelters by Japanese dace Tribolodon hakonensis

SUMMARY: In order to know how fish use temporary streams, we set up artificial temporary streams with and without shelters and investigated the fish that colonized there from connected permanent streams. A total of 220 fish belonging to six species were captured over four sampling periods from May to September, with Japanese dace Tribolodon hakonensis being the most abundant (75%). More Japanese dace colonized the stream with shelters than without shelters. The standard length and condition of Japanese dace tended to be greater in the stream with shelters than without shelters. Foraging behavior and area of Japanese dace differed significantly between the two streams; more Japanese dace employing drift feeding near the entrance of the shelterless stream. Japanese dace predominantly fed upon chironomid larvae, which became abundant in stream mud in July. However, in August and September, Japanese dace rarely preyed upon chironomid larvae and their digestive canal fullness was low, probably because most chironomid larvae had been consumed. This tendency was more prominent in the stream with shelters. The use of temporary waters by Japanese dace changed dynamically in response to the abundance of chironomid larvae and the presence or absence of shelters.     

Variation in fish assemblages across dry-season pools in a Mediterranean stream: effects of pool morphology, physicochemical factors and spatial context

Pires DF, Pires AM, Collares-Pereira MJ, Magalhães MF. Variation in fish assemblages across dry-season pools in a Mediterranean stream: effects of pool morphology, physicochemical factors and spatial context. Ecology of Freshwater Fish 2010: 19: 74–86. © 2009 John Wiley & Sons A/S
Abstract –  Knowledge of patterns of refuge use by fish is critical for maintaining biodiversity in drought-prone streams. In this study, the fish assemblages of 21 dry-season pools in a Mediterranean stream were characterised and related to three sets of factors reflecting pool morphology, physicochemistry and spatial context. Fish were associated with the three sets of variables, with variation partitioning indicating that overall species richness and abundance were primarily related to pool morphology but relative species abundances were mainly associated with physicochemical contexts. In general, species richness was the highest but overall fish abundance was the lowest in large pools. Pools well shaded by riparian canopy held the highest richness and abundance of native fish, but relative species abundances and assembly structure varied among pools contingent on canopy cover, substrate composition and spatial location. These results suggested that conservation of fish diversity in Mediterranean streams requires networks of pools with diverse sizes and physicochemical contexts.     

The effects of riparian management and physicochemistry on macroinvertebrate feeding guilds and community structure in upland British streams

1. Patterns in the community structure and feeding guild composition among macroinvertebrates in the margins and riffles of 66 streams in upland Wales and Scotland were appraised and related to site chemistry, physiography and riparian management. We aimed to assess the effectiveness of riparian strips of broadleaves and moorland/grassland in protecting stream communities and their trophic function during commercial forestry. 2. The composition of macroinvertebrate communities in margins and riffles most strongly reflected stream pH and aluminium concentrations; acidic riffles contained fewest species of all major macroinvertebrate groups. However, the character of marginal habitats had some influence on communities in stream margins through the presence of broadleaf trees or moorland/grassland vegetation in the riparian zone. Even at low pH, streams with moorland riparian zones had different macroinvertebrates from those with pure conifer. 3. Stream chemistry was important in explaining patterns among feeding guilds. Species richness and abundances of grazers and filterers were reduced at acidic sites with high aluminium concentrations. The number of shredder species was significantly lower in riffles at low pH than at high pH. 4. In contrast, marginal habitat structure was of overriding importance in explaining patterns among collectors and predators. These functional groups were most abundant at sites with riparian zones of moorland and grassland, but scarce in streams where the bankside vegetation consisted of coniferous or broadleaved trees. Total grazer abundances were lowest at sites with riparian zones of pure conifer. 5. We conclude that riparian management can modify effects of forestry on the trophic dynamics and structure of the macroinvertebrate communities of upland streams, but the effect operates within a strong gradient due to acidity. Thus, the array of macroinvertebrates which may benefit from riparian management in forest streams is liable to be restricted by low pH. 6. We discuss the wider ramifications of riparian management for the conservation of streams during commercial forestry. In particular we assess if management proposals set out by the forestry industry are supported. We also discuss the problem of scale when considering measures implemented for stream conservation, emphasizing that the control of problems such as acidification may only be possible at a regional level.     

Do network relationships matter? Comparing network and instream habitat variables to explain densities of juvenile coho salmon (Oncorhynchus kisutch) in mid‐coastal Oregon,USA

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Land cover,riparian zones and instream habitat influence stream fish assemblages in the eastern Amazon

The Amazon rainforest has experienced rapid land‐use changes over the last few decades, including extensive deforestation that can affect riparian habitats and streams. The aim of this study was to assess responses of stream fish assemblages to deforestation and land cover change in the eastern Amazon. We expected that percentage of forest in the catchment is correlated with local habitat complexity, which in turn determines fish assemblage composition and structure. We sampled 71 streams in areas with different land uses and tested for relationships between stream fish assemblages and local habitat and landscape variables while controlling for the effect of intersite distance. Fish assemblage composition and structure were correlated with forest coverage, but local habitat variables explained more of the variation in both assemblage composition and structure than landscape variables. Intersite distance contributed to variance explained by local habitat and landscape variables, and the percentage of variance explained by the unique contribution of local habitat was approximately equivalent to the shared variance explained by all three factors in the model. In these streams of the eastern Amazon, fish assemblages were most strongly influenced by features of instream and riparian habitats, yet indirect effects of deforestation on fish assemblage composition and structure were observed even though intact riparian zones were present at most sites. Long‐term monitoring of the hydrographic basin, instream habitat and aquatic fauna is needed to test for potential legacy effects and time lags, as well as assess species responses to continuing deforestation and land‐use changes in the Amazon.     

Factors affecting habitat selection by a small spawning charr population, bull trout, Salvelinus confluentus: implications for recovery of an endangered species

Bull trout, Salvelinus confluentus (Suckley), populations are declining in many streams of North America and are listed under the Endangered Species Act in the United States. Many small populations are isolated in fragmented habitats where spawning conditions and success are not well understood. Factors affecting habitats selected for redds by spawning bull trout and redd habitat characteristics within Gold Creek, a headwater stream in the Yakima River within the Columbia River basin, Washington State, USA, were evaluated. Most spawning (>80% of the redds) occurred in upstream habitats after dewatering of downstream channels isolated fish. Habitats were selected or avoided in proportions different to their availability. For example, most bull trout selected pools and glides and avoided riffles despite the latter being more readily available. Although preferences suggest influences of prolonged fish entrapment, site fidelity could be important. A habitat with redds commonly contained abundant cover, gravel substratum and higher stream flows. The major factors influencing habitat selection by spawning fish and their persistence in streams of the Yakima and Columbia River regions include entrapment of fish by dewatering of channels and geographical isolation by dams. The goal of the US Government's recovery plan is ‘to ensure the long‐term persistence of self‐sustaining bull trout populations’. Recovery plans linked to provisions for protecting and conserving bull trout populations and their habitats were recommended. Landscape approaches are needed that provide networks of refuge habitats and greater connectivity between populations. Concurrent recovery efforts are encouraged to focus on protecting small populations and minimizing dangers of hybridization.     

Effects of anthropogenic disturbances on α and β diversity of fish assemblages and their longitudinal patterns in subtropical streams,China

Identifying the spatial patterns of α and β diversity of biotics is an important yet little‐understood area of basic and applied ecological research. Although the upstream–downstream patterns of α diversity of stream fishes are numerously reported, β diversity has received less attention. In this study, we surveyed fishes along the upstream–downstream gradients in three headwater streams of the Qingyi River, China, which were affected by different extents of human activities. We aimed to assess how anthropogenic disturbances affect α and β diversity of stream fishes and their upstream–downstream patterns. We found that, compared with that in the Shuxi Stream disturbed less, endemic species decreased and cosmopolitan species increased in the Maxi and Puxi Stream disturbed heavily. The streams disturbed heavily showed lower α diversity and higher β diversity than that in the stream disturbed less. This among‐stream variations in fish diversity only occurred at the mid‐downstream, not upstream segments. α diversity increased downstream and β diversity decreased downstream from headwaters to mouth in the stream disturbed less, whereas this upstream–downstream pattern in fish diversity shifted in the streams disturbed heavily, in which both α and β diversity showed the quadratic distributions with the hump‐shape for α diversity and the U‐shape for β diversity respectively. Our results suggest that anthropogenic disturbances cause some cosmopolitan fishes replacing many endemic fishes in upland streams. This replacement processes result in α diversity decreasing and β diversity increasing, and shift the spatial patterns in fish diversity along the upstream–downstream gradient.     

How deforestation drives stream habitat changes and the functional structure of fish assemblages in different tropical regions

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The complementary role of lentic and lotic habitats for Arctic grayling in a complex stream‐lake network in Arctic Alaska

Lakes can be important to stream dwelling fishes, yet how individuals exploit habitat heterogeneity across complex stream‐lake networks is poorly understood. Furthermore, despite growing awareness that intermittent streams are widely used by fish, studies documenting the use of seasonally accessible lakes remain scarce. We studied Arctic grayling (Thymallus arcticus) in a small seasonally flowing (June–October) stream‐lake network in Alaska using PIT telemetry. Overall, 70% of fish visited two lakes, 8% used a single lake, and 22% used only stream reaches. We identified five distinct behavioural patterns that differed in dominant macrohabitat used (deep lake, shallow lake or stream reaches), entry day into the network and mobility. Some juvenile fish spent the entire summer in a shallow seasonally frozen lake (average 71 days), whereas others demonstrated prospecting behaviour and only entered the stream channel briefly in September. Another group included adult and juvenile fish that were highly mobile, moving up to 27 km while in the 3‐km stream‐lake network, and used stream reaches extensively (average 59 days). Lentic and lotic habitats served differing roles for individuals, some fish occupied stream reaches as summer foraging habitat, and other individuals used them as migration corridors to access lakes. Our study emphasises the importance of considering stream‐lake connectivity in stream fish assessments, even to shallow seasonally frozen habitats not widely recognised as important. Furthermore, we demonstrate that individuals may use temporary aquatic habitats in complex and changing ways across ontogeny that are not captured by typical classifications of fish movement behaviour.     

Instream and catchment characteristics affecting the occurrence and population density of brown trout, Salmo trutta L., in forest brooks of a boreal river basin

The occurrence and density of ≥ 1+ brown trout, Salmo trutta L., and their relationship with prevailing instream and catchment characteristics were studied in 50 small forest streams, partially dredged for forest ditching. The occurrence of trout at a stream site was largely determined by the abundance of pools, size of upper catchment and water pH. Moreover, at sites where trout occurred, the abundance of pools was lower at dredged locations than at those in a natural state. In riffles in a natural state, there was a positive relationship between trout density and three instream variables: the abundance of stream pools, cascades and instream vegetation, while an inverse relationship was found with the abundance of substratum of 2–10 cm in diameter. Of the catchment variables, correspondingly, the proportion of forest in the upper catchment was positively related and the proportion of peatland negatively related to trout density. No significant regression model could be fitted for dredged riffles. The possibility of enhancing trout populations in dredged riffles is discussed.     

Influence of forest cover and mesohabitat types on functional and taxonomic diversity of fish communities in Neotropical lowland streams

Abstract – In this study, we investigated how taxonomic and functional diversity of fish communities is influenced by forest cover and mesohabitat types in Neotropical lowland streams. We sampled fish fauna of 126 five‐metre‐long mesohabitats using an electrofishing unit in forested (n = 3) and deforested (n = 3) streams in the upper Paraná River basin, south‐eastern Brazil. According to velocity and depth, three mesohabitat types have been considered: riffles (shallow and fast‐flowing habitat), pools (deep and slow‐flowing habitat) and runs (intermediate depth and velocity). Seven functional traits and 27 trait categories related to ecological, behavioural and life‐history aspects of fish were considered. Our results indicate that forest cover and mesohabitat type influence fish communities in different ways. Whereas deforestation affects communities primarily through changes in diversity (functional and taxonomic), mesohabitat types determine changes in the functional composition. The increased diversity in deforested mesohabitats is driven by a decrease in species turnover among habitat patches within streams. This can be attributed to new feeding opportunities and microhabitat availabilities in deforested streams so favours the occurrence of species having a particular set of traits, indicating a strong habitat–trait relationship.     

Effects of small dam condition and drainage on stream fish community structure

Low‐head dams are ubiquitous in eastern North America, and small dam removal projects seek to improve habitat conditions for resident and migratory fishes. Effects of small dams of varying status on local fish communities are poorly documented, and recent work suggests benefits of maintaining fragmentation. We sampled fish at 25 dams (9 breached, 7 relict, 9 intact) in three river basins in North Carolina, USA. Fishes were sampled at three reaches/dam from 2010 to 2011. Study reaches were located upstream (free‐flowing reaches), downstream (tailrace) and >500 m downstream of dams (n = 75 reaches). Analyses revealed significantly elevated fish CPUE, taxa richness and percentage intolerant taxa in intact dam tailraces suggesting small dams may improve conditions for resident taxa. Breached dam tailrace reaches exhibited lower fish CPUE, taxa richness and percentage intolerant taxa relative to upstream reference reaches. Relict dams exhibited no between‐reach differences in fish community metrics. Nonmetric multidimensional scaling revealed drainage‐specific stream fish responses across study drainages. Tar and Roanoke drainage streams with intact and relict dams supported fish assemblages indicative of natural communities, whereas Neuse Drainage streams with intact and breached dams contained disturbed habitats and communities. These data demonstrate fish community responses to dam condition are drainage specific but communities in streams with intact and relict dams are largely similar. Additionally, breached dams may warrant higher removal priorities than intact dams because they negatively influence fish communities. The variability in response to some dams indicates managers, regardless of region or country, should consider holistic approaches to dam removals on a case‐by‐case basis.     

Experimental provision of large woody debris in streams as a trout management technique

• 1. The natural stock of large woody debris (LWD) in the afforested Douglas River (Fermoy, Co. Cork) is very low relative to old‐growth forests, which seems to arise from deficiency both of supply and retention. Woody debris is important to the ecology and physical structure of forest streams, so its abundance is relevant to aquatic conservation and the maintenance and size of salmonid fish stocks.
• 2. The physical characteristics and fish stocks of 16 contiguous segments of two 200 m stream reaches were surveyed in spring 1998 prior to the installation of 12 partially spanning debris structures on four of the segments. This study investigated the effect of debris structures on the heterogeneity of flow and substratum, and the distribution of brown trout (Salmo trutta), and assessed the potential use of woody debris manipulation as a tool in the management of forest streams.
• 3. Surveys of stream habitat conditions over a 2 year period following the installation of woody debris showed a change in stream architecture. This created more suitable habitat for trout through development of additional pools in which beds of fine sediment developed, and constraining the main current, increasing the amount of eddies and slack water areas.
• 4. There were significant increases in trout density and biomass in the debris segments relative to control segments without debris dams 1 and 2 years after debris addition, although trout condition was not modified by the addition of LWD. These results suggest that the addition of woody debris offers a positive and practical management technique for enhancing fish in plantation forest streams.

Copyright © 2002 John Wiley & Sons, Ltd.     

Biology and habitat use of three-spined stickleback (Gasterosteus aculeatus) in intermittent Mediterranean streams

Abstract –  We present the first data on three-spined stickleback ( Gasterosteus aculeatus ) life history and habitat use in seasonal Mediterranean streams, analysing populations from NE Iberian Peninsula. Stickleback populations were strictly annual, with reproduction events involving exclusively 1+ fish. Somatic growth was concentrated in two periods, one in spring and early summer, and another in autumn and winter. During summer there was a clear stop in the somatic growth, coupled with low values of somatic condition. This growth pattern contrasts both with that of other Mediterranean stream fish species and that of stickleback in other European locations. Stickleback populations occupied mainly intermediate locations along fluvial gradients. The presence of abundant aquatic vegetation was identified as one of the main factors related with both stickleback presence and the abundance of its populations, while the latter was also negatively related with that of invasive fish and crayfish species. Stickleback tended to occur in native-dominated fish communities, being almost absent from lower stream reaches, which bear high abundances of invasive fish species.     

Temporal and spatial dynamics of fish community structure during watershed alteration in two Ouachita River systems

Fish community composition is highly dynamic, but generally exhibits loose equilibrium within bounds of community structure in upland stream systems with minimal anthropogenic disturbance. Chronic anthropogenic disturbance can exceed ecological thresholds and shift fish community composition to an alternative state. Therefore, long‐term datasets are critical to understand spatiotemporal dynamics of fish community structure. We quantified temporal changes in fish communities in two Ouachita River systems during watershed alteration (i.e., development and reservoir construction) using a suite of multivariate and univariate analyses to assess changes in fish community structure and taxonomic and functional β‐diversity. We found fish community composition shifted in the Saline River basin possibly in response to human disturbance (e.g., development) and hydrologic variability. Furthermore, functional homogenisation occurred through time. In the Ouachita Headwaters basin, taxonomic homogenisation was evident and two fluvial specialists were not detected during the current period. Taxonomic and functional β‐diversity patterns were not consistent across basins demonstrating the complexity of biotic homogenisation. Our retrospective analyses showed human activities played a role in restructuring fish communities despite minimal invasion of exotic species. Ultimately, our study characterised fish community structure across snapshots of time and demonstrates the importance of increasing the frequency of sampling intervals and continuing long‐term collections with similar methods to enhance the understanding of community dynamics.     

The dynamism fish-plant association: Ontogenetic variations in assemblage attributes in neotropical floodplain lakes

Structural habitat complexity provided by macrophytes is expected to increase richness and abundance of fish species. However, this topic is rarely investigated simultaneously at different periods of fish development. We sampled fish within macrophyte stands and in non-vegetated areas at floodplain lakes and tested the hypothesis that the presence of macrophytes increases abundance and species richness of fish, in addition to changes in species composition, at different periods of fish development. Our findings demonstrated that, in different period of fish development, the highest values of fish species richness and abundance were found at sites colonised by macrophytes. Similarly, changes in fish species composition were observed between habitats colonised by macrophytes and non-vegetated areas. Therefore, the results demonstrate that macrophyte presence plays an important role in regulating fish community structure at different periods of fish development.     

Responsiveness of fish mass–abundance relationships and trophic metrics to flood disturbance,stream size,land cover and predator taxa presence in headwater streams

Characterisation of food webs, by summarising energy transfer and trophic relationships, allows more functional measurement of ecosystems and may reveal threats (e.g., land‐cover change) in sensitive environments that are not obvious from conventional biomonitoring. However, typical methods used to achieve this are time‐consuming and expensive. Therefore, we tested the usefulness of fish‐focused food‐web proxies as functional measures, specifically mass–abundance relationships of fish assemblages and stable isotope (SI)‐derived metrics in headwater stream reaches. These metrics have been trialled before for similar use in other settings, but have yielded varying results, and have not been employed in tandem in temperate freshwaters. Sampling reaches (N = 46) were spread across a variety of streams, and the effects of habitat predictors at multiple scales on metrics were assessed using model selection. We found that habitat size positively correlated with food‐chain lengths in streams, possibly because of increased abundance of fish at multiple trophic levels in habitats with more space. Additionally, flood disturbance was negatively associated with fish mass–abundance and carbon range, likely due to the harshness of flood‐prone streams. Riparian land‐cover variables were correlated with multiple metrics, indicating the importance of terrestrial–aquatic linkages. Additionally, variations in all metrics were influenced by the presence of native, predatory longfin eels. Overall, we conclude that mass–abundance relationships and SI‐derived metrics are sensitive to drivers of trophic organisation and likely reflect processes occurring at multiple spatial scales in freshwaters. Thus, these metrics could be an insightful monitoring tool for managers because they reflect functional measures of aquatic ecosystems.     

Effects of life‐history traits on stream fish abundances across spatial scales

Identifying cross‐scale patterns of ecological processes is imperative, especially in hierarchically structured riverine ecosystems. The role of abiotic factors in determining cross‐scale spatial structure of stream fish populations and communities is well studied, but less is known about how species traits drive cross‐scale patterns. We investigated the role of species traits for explaining autocorrelation of stream fish abundance at spatial scales ranging from local stream reaches to major basins. We calculated intraclass correlation coefficients (ICCs) representing abundance autocorrelation within species (N = 47) at each of five spatial scales. A hierarchical Bayesian regression then modelled ICCs against spatial scale with the resulting regression coefficients modelled as functions of species traits. Finally, we ordinated the scale‐by‐species ICC matrix to calculate an overall metric describing species whose abundances were autocorrelated along a gradient of large to small scales, and modelled this metric as a function of species traits. Abundances of most species were autocorrelated at smaller spatial scales. Maximum fecundity had a significant positive relationship with abundance patterns across spatial scales. Species habitat affinities and body forms were significantly associated with overall abundance patterns across spatial scales: populations of upland/lotic‐affiliated species adapted to streams with high flow correlated at small (≤10 km²) spatial scales. Lowland/lacustrine species with laterally compressed bodies showed little correlation across scales. The appropriate spatial scale for modelling abundance is determined not only by exogenous (e.g. environmental) factors, but also endogenous factors, like traits. Careful consideration of traits and life history will aid researchers in designing more effective and efficient surveys and analyses.